BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42330.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494800 jgi|Araly1|494800|fgenesh2_kg.8__616__AT5G42330.1 1031 0.0
> Ahg494800 jgi|Araly1|494800|fgenesh2_kg.8__616__AT5G42330.1
Length=739
Score = 1031 bits (558), Expect = 0.0
Identities = 688/749 (92%), Gaps = 15/749 (2%)
Strand=Plus/Plus
Query 36 TCGAAATCTCTTGAAGAAGCTTTTTGGCTATGTCGAAGATGAGATCTTACCTGAAACCAC 95
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCGAAATCTCTTGAAGAAGCTTTTTGGCGATGTCGAAGATGAGATCTTACCTGAAACCAC 60
Query 96 CGCTTCCCAAATCTCCGATCCGTCTCCGTTCACGTCAAGTCCTTCACTCTTCTCTCCAAA 155
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 61 CTCTTCCCAAATCTCCGATCCGTCTCCGATCACGTCAAGTCCTTCACTCATCTCTCCAAA 120
Query 156 CCCCATCGCCAGGTTTTCTA-AAGCCGGGACGAAGATTGAGTGACGTAGATCTAAACCCT 214
| ||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CACCATCACCAGGTTTTC-AGAAGCCGGGACGGCGATTGAGTGACGTAGATCTAAACCCT 179
Query 215 AAACCCCAAATCAAATACTCATCAATCTCTAGCGAGATACATGCTTTAGCAAAGATGGTG 274
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACCCCAATTCGAATACTCATCAATCTCTAGCGAGATACATGCTTTAGCAAAGATGGTG 239
Query 275 AAAGACGAGTTTGCTGAAGAAGAGGATCGCAAAAAGTCTTCGAATTTGGAGAGTTTGGCA 334
|||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 240 AAAGACGAGTTTGCGGAAGAAGAGAACCGAAAAAAGTCTTCGAATTTGGAGAGTTTGGCG 299
Query 335 AAGAATTCAGTTCCGTTATTCGAGAGAGGGAGGTTTTACGAGGAGTATTCGGCTAA-ACG 393
| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 300 ACGAATTCGGTTCCGGTATTCGAGAGAGGGAGGTTTTACGAGGAGTATTCGGCTAAGA-G 358
Query 394 GAACGAGAGATTGAGGAGGAAGAAAGGAGAAGAAGCTGTAGAAGGAGGAGTTGTGAAAGG 453
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 GAACGAGCGATTGAGGAGGAAGAAAGGAGAAGAAGCTGTTGAAGGAGGAGTTGTGAAAGG 418
Query 454 AACTCCTTATAATCTCGGAGTTAATCATGAACCGATGACGAATAAGAGACGAGGAACGGC 513
||||||||||||||| || || |||||||||||||||||||||||| || ||||||||||
Sbjct 419 AACTCCTTATAATCTTGGTGTGAATCATGAACCGATGACGAATAAGCGAAGAGGAACGGC 478
Query 514 GAAGAAGGAGAGCATCAAGAAGACGGTGGTGTCTATGGTTGAGAGTAGTAGTATACCGAG 573
|||||||||||| || |||||||||||||| || |||||||||| ||||| || |||||
Sbjct 479 GAAGAAGGAGAGTATTAAGAAGACGGTGGTATCGATGGTTGAGACTAGTA-TA--CCGAG 535
Query 574 GTATTC-TCTGAGGAGTATGGCTAAGGAGAATAGGAAGCCACCGCTTCCGCTTAATGTCG 632
|||||| | ||||||||||| | ||||||||||||||||| ||| |||||||||||||||
Sbjct 536 GTATTCGT-TGAGGAGTATGACCAAGGAGAATAGGAAGCCGCCGATTCCGCTTAATGTCG 594
Query 633 CTGTAAGTGCGATGAAGAGTGTTACTACACGAA-AGGGTAGGAGAATCTGAAACTGAGGT 691
|||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 595 CTGTAAGTGCGATGAAGACTGTTACTACTCGAAGAGG-TAGGAGAATCTGAAACTGAGGT 653
Query 692 G-TGTTTTTGTATGAAACCGAAAACTAGAGATTTGGTTTCTTGAAATTTATTTTGGTATT 750
| |||||| ||| | || |||| | | |||||||||||||||| || |||||||||||
Sbjct 654 GATGTTTT-GTAAGGAATTGAAATTTGGGGATTTGGTTTCTTGAACTT-ATTTTGGTATT 711
Query 751 GTTTTTGCTTGTGGATTTCGATTAAATCC 779
||||| |||||||||||||| ||||||||
Sbjct 712 GTTTT-GCTTGTGGATTTCGGTTAAATCC 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5