BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42340.1
Length=2264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949064 jgi|Araly1|949064|scaffold_800951.1 3035 0.0
> Ahg949064 jgi|Araly1|949064|scaffold_800951.1
Length=2036
Score = 3035 bits (1643), Expect = 0.0
Identities = 1910/2041 (94%), Gaps = 9/2041 (0%)
Strand=Plus/Plus
Query 82 TTCAAACGCGATAGAGAGTCTCTAATGGTCGA-TGTGATGGATACAGATGAAGAAGCCAC 140
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||
Sbjct 1 TTCAAACGCGATAGAGAGTCTCTAATGGTC-ATTGTGATGGACGCAGATGAAGAATCCAC 59
Query 141 AGGAGATGCAGAGAACCGTGATGAAGAAGTTACCGCAGAAGAACCGATTCACGATGAGGT 200
||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 60 AGGAGATGCAGAGAACCTTGAGGAAGAAGTTACCGCAGAAGAACCGATCCACGATGAGGC 119
Query 201 TGTGGATGCGGTGGAGATTCATGAGGAAGAAGTGAAAGAA-GATGATGATGATTGTGAAG 259
|||||||||||||||||||||||| |||||||||||| || | ||||||||||||||| |
Sbjct 120 TGTGGATGCGGTGGAGATTCATGACGAAGAAGTGAAA-AATGGTGATGATGATTGTGATG 178
Query 260 GATTGGTGAGCGATATCGTATCGATTGTCGAGTTTTTGGATCAGATTAACGGTTATCGAA 319
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 179 GATTGGTGAGCGATATCGTATCGGTTATCGAGTTTTTGGATCAGATTAACGGTTATCGAA 238
Query 320 GAACACAACAAAAAGAATGTTTTAATCTCGTTAGACGATTGAAGATTCTTATTCCATTTT 379
||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct 239 AAACACAACAGAAAGAATGTTTTAACCTCGTAAGACGATTGAAGATTCTGATTCCTTTTT 298
Query 380 TGGATGAGATTCGAGGTTTTGAATCACCAAGTTGCAAGCATTTTTTAAATCGTTTGAGGA 439
|||| ||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 299 TGGAAGAGATTCGAGGATTTGACTCACCAAGTTGCAGGCATTTTGTAAATCGTTTGAGGA 358
Query 440 AAGTGTTTCTTGCTGCCAAGAAATTATTAGAAACTTGCAGCAATGGCAGTAAAATCTATA 499
||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 AAGTGATTCTTGTTGCTAAGAAATTATTAGAAACTTGCAGCAATGGCAGCAAAATCTATA 418
Query 500 TGGCATTGGATGGCGAAACAATGATGACGAGATTTCATTCGATTTACGAAAAGTTGAATC 559
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TGGCATTGGATAGCGAAACAATGATGACGAGGTTTCATTCGATTTACGAAAAGTTGAATC 478
Query 560 GTGTTCTTGTTAAAGCTCCTTTTGATGAATTAATGATTTCTGGTGATGCGAAAGACGAGA 619
|||||||||||||| |||||||||| ||||| | |||||||| |||| |||||| ||||
Sbjct 479 GTGTTCTTGTTAAAACTCCTTTTGACGAATTGACGATTTCTGAAGATGTGAAAGAAGAGA 538
Query 620 TTGATTCATTGTGTAAACAACTGaaaaaagcaaaaaGAAGAACAGATACACAAGACATAG 679
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 TTGATGCATTGTGTAAACAACTGAAAAAGGCAAAAAGAAGAACAGATACACAAGACATAG 598
Query 680 AGCTAGCAGTAGACATGATGGTGGTATTCTCAAAAACCGATCCTCGAAACGCAGATAGCG 739
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 599 AGCTAGCAGTAGACATGATGGTGGTCTTTTCAAAAACCGATCCTCGAAACGCAGATAGCG 658
Query 740 CGATAATAGAGAGGCTAGCGAAAAAGCTTGAGCTACAAACAATTGATGATTTAAAGACAG 799
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 659 CTATAATCGAGAGGCTTGCGAAAAAGCTTGAGCTACAAACAATTGAGGATTTGAAGACGG 718
Query 800 AAACTATAGCCATACAAAGCTTAATCCAAGACAAAGGAGGTTTGAACATAGAGACTAAAC 859
|||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 719 AAACCATAGCCATAAAAAGCTTAATCCAAGAAAAAGGAGGGTTGAATATAGAGACTAAAC 778
Query 860 AACATATCATTGAGCTTCTTAACAAGTTCAAGAAGCTTCAAGGTCTTGAAGCTACCGACA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AACATATCATTGAGCTTCTTAACAAGTTCAAGAAGCTTCAAGGTCTTGAAGCTACCGACA 838
Query 920 TTCTCTACCAACCCGTCATCAATAAAGCAATCACCAAGTCAACGTCTCTAATATTACCTC 979
||||||||||||| ||||||||||||||| |||||||||| || || |||||||||||||
Sbjct 839 TTCTCTACCAACCTGTCATCAATAAAGCATTCACCAAGTCGACTTCCCTAATATTACCTC 898
Query 980 ATGAGTTTTTGTGTCCTATAACACTCGAAATAATGCTTGACCCGGTTATCATCGCCACTG 1039
| ||||||||||||||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 899 ACGAGTTTTTGTGTCCTATCACTCTCGAAATAATGCTAGATCCGGTTATCATCGCCACTG 958
Query 1040 GACAGACATATGAGAAGGAGAGTATACAGAAATGGTTTGACGCAGGACATAAGACTTGTC 1099
||||||||||||| ||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 959 GACAGACATATGAAAAGGAGAGTATTCAGAAATGGTTTGATGCGGGGCATAAGACTTGTC 1018
Query 1100 CTAAAACAAGACAGGAGTTAGATCATCTCTCTCTTGCACCTAACTT-CGCTTTAAAGAAC 1158
| ||||| ||||| ||| |||||||||||||||||||||| || || || |||||||||
Sbjct 1019 CGAAAACTAGACAAGAGCTAGATCATCTCTCTCTTGCACCCAA-TTATGCCTTAAAGAAC 1077
Query 1159 TTGATTATGCAGTGGTGTGAGAAGAACAATTTCAAGATTCCAGAGAAAGAAGTAAGTCCT 1218
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1078 TTGATTATGCAGTGGTGTGAGAAGAACAATTTCAAGATTCCAGAGAAAGAAGCAAGTCCC 1137
Query 1219 GACTCACAAAATGAGCAGAAAGATGAGGTCTCTTTGCTGGTGGAAGCGTTATCGTCAAGC 1278
||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1138 CACTCAGAAAATGAGCAGAAAGATGAGGTATCTTTGCTGGTGGAAGCTTTATCGTCAAGC 1197
Query 1279 CAACTGGAAGAACAACGAAGATCAGTGAAGCAGATGCGTTTGCTAGCCA-GAGAAAATCC 1337
|| ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1198 CATTTGGAAGAACAAAGAAGATCAGTGAAGCAGATGCGTTTGCTCG-CACGAGAAAATCC 1256
Query 1338 CGAGAACCGCGTTTTAATAGCGAATGCAGGAGCGATTCCTTTGTTAGTTCAACTCCTTTC 1397
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1257 CGAGAACCGAGTTTTAATAGCGAATGCAGGAGCGATCCCTCTGTTAGTTCAACTCCTTTC 1316
Query 1398 TTACCCTGATTCAGGAATCCAAGAAAACGCGGTAACGACATTGTTGAATCTATCTATCGA 1457
|||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1317 TTACCCTGATTCTGGAATCCAAGAGAACGCAGTAACGACTTTGTTGAATCTATCTATCGA 1376
Query 1458 CGAGGTCAACAAGAAACTCATTTCAAATGAAGGAGCTATTCCAAACATTATTGAAATCCT 1517
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TGAGGTCAACAAGAAACTCATCTCAAATGAAGGAGCTATTCCAAACATTATTGAAATCCT 1436
Query 1518 TGAAAATGGAAACAGAGAGGCAAGAGAGAACTCTGCTGCAGCTTTGTTTAGTTTATCGAT 1577
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCAAAATGGAAACAGAGAGGCAAGAGAGAACTCTGCTGCAGCTTTGTTTAGTTTATCGAT 1496
Query 1578 GCTCGATGAGAACAAAGTAACTATCGGATTATCGAATGGGATACCGCCTTTAGTCGATTT 1637
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1497 GCTCGATGAGAACAAAGTAACTATCGGATTATCAAATGGGATCCCGCCTTTAGTCGATTT 1556
Query 1638 ACTACAACATGGGACATTAAGAGGGAAGAAAGATGCTCTCACTGCACTCTTTAACTTGTC 1697
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 ACTGCAGCATGGGACATTAAGAGGGAAGAAAGATGCTCTCACTGCACTCTTTAACTTATC 1616
Query 1698 TCTTAACTCAGCTAATAAAGGAAGAGCTATCGATGCTGGTATTGTTCAACCTTTGCTTAA 1757
||||| |||||||||||||| ||||| || |||||||| || |||||||||||||| ||
Sbjct 1617 CCTTAATTCAGCTAATAAAGGGAGAGCCATTGATGCTGGAATCGTTCAACCTTTGCTCAA 1676
Query 1758 CCTTCTTAAAGATAAAAACTTAGGGATGATCGATGAAGCGCTTTCGATTCTGTTGCTGCT 1817
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1677 CCTTCTGAAAGATAGAAACTTAGGGATGATCGATGAAGCGCTTTCGATTCTGTTGCTTCT 1736
Query 1818 TGCATCACACCCTGAAGGACGTCAAGCCATTGGACAACTCTCCTTCATTGAAACACTTGT 1877
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1737 TGCATCACACCCTGAAGGACGTCAAGCCATTGGACAACTCTCCTTCATTGAAACGCTTGT 1796
Query 1878 GGAATTCATCAGACAAGGCACCCCGAAAAACAAAGAGTGTGCGACCTCGGTGCTGCTTGA 1937
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1797 GGAATTTATCAGACAAGGCACCCCGAAGAACAAAGAGTGTGCGACCTCGGTGCTACTTGA 1856
Query 1938 ACTAGGCTCTAACAACTCGTCTTTTATCCTCGCAGCGCTTCAATTCGGAGTTTATGAATA 1997
|||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||
Sbjct 1857 ACTAGGCTCTAACAACTCATCTTTTATCCTCGCTGCGCTTCAATTCGGCGTCTATGAATA 1916
Query 1998 TCTGGTAGAAATAACCACCTCTGGAACAAACAGAGCTCAGAGAAAAGCAAATGCTCTTAT 2057
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1917 TCTTGTAGAAATAACCACATCTGGAACAAACAGAGCTCAAAGAAAAGCAAATGCTCTTAT 1976
Query 2058 ACAACTCATAAGCAAATCTGAACAAATTTAGACTTGTTCTAAACATTTTCATCTTCTACT 2117
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1977 ACAACTCATAAGCAAATCTGAACAAATTTAGACTTGTTCTAAAC-TTTTCATCTTGTACT 2035
Query 2118 G 2118
|
Sbjct 2036 G 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85245968310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5