BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42370.2
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916127 jgi|Araly1|916127|Al_scaffold_0008_878 1489 0.0
> Ahg916127 jgi|Araly1|916127|Al_scaffold_0008_878
Length=1383
Score = 1489 bits (806), Expect = 0.0
Identities = 969/1048 (92%), Gaps = 9/1048 (1%)
Strand=Plus/Plus
Query 234 TTGCTTCTAGGGTTTTCTCTTCGATTCACCACA-TCGTCATGAACCAAATCTCTTTCTGG 292
||||||||||||||||||||||||||| || | || || ||| |||| ||||||
Sbjct 5 TTGCTTCTAGGGTTTTCTCTTCGATTC-TCA-ATTC-CCA-CCACCGCCTCTCCTTCTGG 60
Query 293 TGCCTTTCTTTACTCCTT-ACGGTGGTGATTGCTGCAGAAGAGACTCCTATCACTCGTAT 351
|| ||||||| || ||| |||||| |||||||||||||||||| || |||||||||||
Sbjct 61 TGGTTTTCTTTGCT-CTTCACGGTGACGATTGCTGCAGAAGAGACCCCGATCACTCGTAT 119
Query 352 AGCCTTCGGATCATGCGCTAATCAAAGTGCTCCACAGCCGATATGGGATGCGATAAACAA 411
|||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 120 CGCCTTCGGCTCATGTGCTAACCAAAGCGCTCCACAGCCAATATGGGATGCGATAAACAA 179
Query 412 GTTTGATCCGCAACTGTTTATTTGGTTGGGTGATAACATCTACGGAGATATAAGAAGACC 471
|||||||| ||| |||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 180 TTTTGATCCACAATTGTTCATTTGGTTGGGTGATAACATCTATGGAGATATTAGAAGACC 239
Query 472 ACTTACAGTCATTGGGAAAGAGAGAACTTTTGGGCCATGGAGGAATTCACCGAGGTTTGT 531
||||| ||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||
Sbjct 240 ACTTAAAGTCATTGGTAAAGAGAGAACCTTTGGGCCATGGAAGAATACACCGAGGTTTGT 299
Query 532 ACCTTCTTCAGAGGAAGAAATGAAACTAAGATACGCTAAAGCCAAAGCTAATCCTGGATA 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCCTTCTTCAGAGGAAGAAATGAAACTAAGATACGCTAAAGCCAAAGCTAATCCTGGATA 359
Query 592 TTCTCGTATTCAGAGAAAAGCTAAGGTTATTGGTACATGGGATGATCATGATTACGGATT 651
|||| || |||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TTCTAGTCTTCAGAGAAAGGTTAAGGTTATTGGTACTTGGGATGATCATGATTACGGATT 419
Query 652 GAATGACGCTGGAAAAGAGTTTGATCGTAAAGTCATTAACCAAAAACTTATGCTTGATTT 711
||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 420 GAATGACGCCGGAAAAGAGTTTGATCGTAAAGTTACTAACCAAAAACTCATGCTTGATTT 479
Query 712 CTTGAATGAGCCTCTTGATAGTCCTAGGAGAAAGCAAGCTGGTGTTTATGCTTCTTATAC 771
|||| |||||||||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 480 CTTGGATGAGCCTCTTGATAGCCCGAGGAGAAAGCAAGCTGGAGTTTATGCATCTTATAC 539
Query 772 TTATGGTCCGCCTAATCGGAAAGTTAAGGTTATAGTTTTAGATACTAGATATCATAGAGA 831
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TTATGGTCCGCCTAATCGGAAAGTTAAGGTTATAGTTTTGGATACTAGATATCATAGAGA 599
Query 832 CCCTTTAAGAAGTGACGGGAGCATATTGGGTGATACGCAGTGGGACTGGCTCGAAAATGA 891
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 600 CCCTTTGCGAAGTGACGGGAGTATCTTGGGTGATACGCAGTGGGACTGGCTCGAAAAAGA 659
Query 892 ATTGAGCGGTCCC-CGAAGCGAAATCACTATCATAGGATCCTCTGTTCAGGTGATATCAA 950
|||||| || ||| || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 660 ATTGAGAGG-CCCACGGAGCGAAATTACTATCATTGGATCATCTGTTCAGGTGATATCAA 718
Query 951 ATCTTTCTGCTACCACTGGACCTCTCTTTTATATGGAATCATGGGGTCGTTTTCCAAAGG 1010
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 719 ATCTTTCTGCTACCACTGGACCACTCTTTTATATGGAATCATGGGGCCGTTTTCCAAAGG 778
Query 1011 AAAGGAAACGTCTTTTTAAACTGATAGCAGATACTAAGAGAGATGGAGTTATATTCATCA 1070
|||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct 779 AAAGGAAACGTCTTTTCAAACTGATATCAGACACTAAGAGAAATGGAGTTATATTCATCA 838
Query 1071 GTGGAGATGTACATTTTGGAGAAATCACGAGATATGATTGTTCTGTTGGGTACCCATTAT 1130
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 GTGGAGATGTTCATTTTGGAGAAATCACGAGATACGATTGTTCTGTTGGGTACCCATTAT 898
Query 1131 ATGATGTCACCTCCAGTGGTCTAGTACAATCTGTTGAGAAAGTTGTCCCTCGTCCCTTGC 1190
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 ATGATGTCACCTCCAGTGGTCTAGTACAATCTGTTGAGAAAGTTTTCCCTCGTCCCTTGC 958
Query 1191 GTTCCATAGTTAGGCTTCTTTTTTGGTATACTCCAAGCACGATGAGAGTTATCAATGATA 1250
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATTCCATCGTTAGGCTTCTTTTTTGGTATACTCCAAGCACGATGAGAGTTATCAATGATA 1018
Query 1251 ACTGCAAATTCAAATCTTGCACATACGG 1278
|||||||||||||||| |||||||||||
Sbjct 1019 ACTGCAAATTCAAATCATGCACATACGG 1046
Score = 438 bits (237), Expect = 6e-122
Identities = 266/280 (95%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1355 CTCGAGATCAGAGATGTTAACGGAGACACTGTACTAGGCACGAATGTTTCATTATCTGAA 1414
|||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct 1105 CTCGAGATCAGAGATGTTAACGGACACACAGTACTAGGCACAAATGTTTCATTATCCGAA 1164
Query 1415 CTCCAACCAGGAGGCTCGAATTCTTTAAAAGATACAACAACTAAGGGAAAGTCTCAACGA 1474
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||
Sbjct 1165 CTCCAACCAGGAGGCTCGAATTCTTTGAAAGATGCAACAACAAAGGGAAAGTCCCAACGA 1224
Query 1475 TATTGCACACTCGAAATTGAATTACCAGGAAC-GACCAGATACCGATTGGCAGTTCTCAT 1533
||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||
Sbjct 1225 TATTGCACACTCGAAATTGAATTACCAGG-ACTGATCAGATACAGATTGGCAGTTCTCAT 1283
Query 1534 CTACTTCACCATTGCTGTCTTGGCAATGGCGATATTAGGACTTATCATTGGAGCTGTATT 1593
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1284 CTACTTCACCGTTGCTGTCTTGGCAATGGCGATATTAGGACTTATCATTGGAGCTATATT 1343
Query 1594 GGCCATAACAGCATGCGTTTATAAATGCAAGGTCGATTGA 1633
||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GGCCATAACAGCATGCGTTTATAAATGCAAGGTCGATTGA 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74466428975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5