BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42380.1
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949051 jgi|Araly1|949051|scaffold_800938.1 893 0.0
> Ahg949051 jgi|Araly1|949051|scaffold_800938.1
Length=598
Score = 893 bits (483), Expect = 0.0
Identities = 561/598 (94%), Gaps = 8/598 (1%)
Strand=Plus/Plus
Query 36 ATATTCAAATCAAG-AA--ATGACTCTCGCTAAGAACCAAAAATCATCATTGTCACGACT 92
|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 2 ATATTCAAATCAAGAAATTATGACTCTCGCTAAGAACCAAAAATCACCATTGTCACGACT 61
Query 93 ATACAAGAAAGTTTCCTCGAAGAGATCAGAATCGTCAAGAAACCTTGAAGACGAATCAAG 152
||||||||| |||||| |||||||||||||||||||||||| |||||||||||| ||||
Sbjct 62 ATACAAGAAGGTTTCCAAGAAGAGATCAGAATCGTCAAGAAATCTTGAAGACGAAGCAAG 121
Query 153 AACGAGCAGTAATAGTAGCGGAAGCAGCTCGTTAAACGTTAACGAGCTAAGAACCGTTTT 212
||||||||| | |||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 122 AACGAGCAGCAGCAGTAGCGGAAGCAGCTCGTTAAACATCGACGAGCTAAGAACTGTTTT 181
Query 213 TGACTATATGGATGCAAACTCAGACGGGAAAATCTCCGGTGAAGAGCTACAAAGCTGCGT 272
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 182 TGACTACATGGATGCAAACTCCGATGGGAAAATCTCCGGTGAAGAGCTACAAAGCTGCGT 241
Query 273 TAGTCTCTTAGGCGGCGCGTTATCGTCACGTGAGGTGGAGGAAG-TGGTGAAGACATCAG 331
||||||||||||||||||||||||||||||||||| ||||| || | ||||||| |||||
Sbjct 242 TAGTCTCTTAGGCGGCGCGTTATCGTCACGTGAGGCGGAGG-AGATAGTGAAGATATCAG 300
Query 332 ACGTTGACGGAGACGGGTTTATAGATTTTGAG-GAGTTTTTGAAGCTTATGGAAGGGGAA 390
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 301 ACGTTGACGGAGACGGGTTTATAGATTTTG-GTGAGTTTTTGAAGCTTATGGAAGGAGAA 359
Query 391 GATGGTAGTGATGAAGAAAGGAGGAAGGAGTTGAAAGAAGCGTTTGGGATGTATGTTATG 450
||||||| ||||||||| |||||||||||| ||| || ||||||||||||||||| |||
Sbjct 360 GATGGTAATGATGAAGAGAGGAGGAAGGAGCTGAGAGTGGCGTTTGGGATGTATGTGATG 419
Query 451 GAGGGGGAAGAGTTTATTACGGCGGCGAGTTTACGGAGGACGTTGAGTCGACTCGGCGAG 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGGGGGAAGAGTTTATTACGGCGGCGAGTTTACGGAGGACGTTGAGTCGACTCGGCGAG 479
Query 511 TCGTGTACGGTTGATGCTTGTAAGGTTATGATTCGTGGGTTTGATCAGAATGACGATGGA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCGTGTACGGTTGATGCTTGTAAGGTTATGATTCGTGGGTTTGATCAGAATGACGATGGA 539
Query 571 GTTCTCAGCTTTGACGAGTTTGTTTTGATGATGCGTTGAGATGAT-ATATATGGGATT 627
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 GTTCTCAGCTTTGAAGAATTTGTTTTGATGATGCGTTGAGATGATGATATATGGGATT 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29202154422
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5