BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42400.1
Length=4272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494795 jgi|Araly1|494795|fgenesh2_kg.8__611__AT5G42400.1 4139 0.0
> Ahg494795 jgi|Araly1|494795|fgenesh2_kg.8__611__AT5G42400.1
Length=4245
Score = 4139 bits (2241), Expect = 0.0
Identities = 2740/2976 (92%), Gaps = 53/2976 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGCGGTTGATTCCACTTTTC-CTAGCCATGGTAGCTCTTATTCTAGTAGAAGGAA 59
|||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGTTGCGGTTGATTCCTC-TTTCTCTAGCCATGGTAGCTTTTATTCTAGTAGAAGGAA 59
Query 60 GAAAGTTTCTGCTTTGGAACCGAATTATTTCGGTTCAATGTGTATGGGAGTTTACAGTGA 119
|||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 60 GAAAGTCTCTGCTTTGGAACCAAATTTTTTTGGTTCAATGTGTATGGGAGTTTACAGTGA 119
Query 120 TGATGTTTCAATCTCTGCAAGAGAAGTAGCTCAAGATTACTCTTGTGACAGCTGTGGTGA 179
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TGATGTTTCAATCTCTGCAAGGGAAGTAGCTCAAGATTACTCTTGTGACAGTTGTGGTGA 179
Query 180 TTTGGCTACTGTATCTTCCGCTTGTTGCAATTTTGATGAACTGTGTGGTTTGGATTCAGC 239
|||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 180 TTTGGCGACTGTATCTTCGGCTAGTTGCGATTTTGATGAACTGTGTGGTTTGGATTCAGC 239
Query 240 CTTGGAGATGGGATGTCGTTCAAATGAAGACTGTCGTGCGGGTCAAGAGGCTTCTGGTAG 299
||||||||| |||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 240 CTTGGAGATAGGATGTCGGTCCAATGGAGACTGTCGTGCGGGTCAAGAGGCTTCTGGTAG 299
Query 300 TGGCATAGCTTCAGGTCTAGACAAGAGTGTTCCAGGGTATACCATGTATGCAAGTGGTTG 359
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 300 TGGCATAGCTCCAGGTCTAGACAAGAGTGTTCCAGGATATACCATGTATGCAAGCGGTTG 359
Query 360 GATGTATGGTAATCAGCAAGGTCAGATGTGTGGCCCTTACACGCAACAGCAGCTATATGA 419
|||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 360 GATGTACGGTAATCAGCAAGGTCAGATGTGTGGCCCTTATACGCAACAGCAACTATATGT 419
Query 420 TGGGCTATCAACTAACTTCTTACCGGAGGATCTTCTTGTATATCCAATTATCAATGGTTA 479
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TGGGCTATCAACTGGTTTTTTACCCGAGGATCTTCTTGTATATCCAATTATCAATGGTTA 479
Query 480 TACTGCAAATTCTGTACCACTT-AAGTACTTCAAGCAGTTTCCAGATCATGTCGCTACTG 538
|||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||
Sbjct 480 TACTGCAAATTCTGTACC-GTTAAAGTACTTCAAGCAGTTTCCAGATCATGTTGCCACTG 538
Query 539 GCTTTGCATATCTACAAAATGGAATAATAAGTGTAGCCCCATCTGTTACTTCA-TTTCCC 597
||||||||||||||||||||||| | ||||| ||||||||| |||||| |||| ||| |
Sbjct 539 GCTTTGCATATCTACAAAATGGAGTGATAAGGGTAGCCCCACCTGTTAGTTCACTTT-CT 597
Query 598 CCTTCTAGTAGTAATGCTACAGTCCATCAAGATGAGATTCAAACAGAGCATGCAACTTCT 657
| |||||| |||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct 598 CTTTCTAGCAGTAATGCCACAGTCCATCAAGATGAGACTCGAACAGAGCATGCAACTTCT 657
Query 658 GCTACTCATTTGATCTCCCATCAGACGATGCCTCCACAGACAAGTTCTAATGGTTCTGTT 717
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 658 GCTACTCATTTGATCTCCCATCAGACGTTGCCTCCACAGACCTGTTCTAATGGTTCTGTC 717
Query 718 TTAGATCAGCTAACACTAAACCACGAGGAATCAAATATGTTAGCTTCATTCCTCTCATTG 777
| ||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||||||
Sbjct 718 TCAGATCAGCTAACATTAAACCAGGAGGAGTCAAATCTGTTAGCGTCATTCCTCTCATTG 777
Query 778 GGAAACGAACATGCTTGCTGGTTTCTCGTTGATGGTGAAGGTAGAAATCATGGTCCACAT 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 778 GGAAACGAACATGCTTGCTGGTTTCTCGTGGATGGTGAAGGTAGAAATCATGGACCACAT 837
Query 838 TCTATATTGGAGCTTTTTAGTTGGCAGCAGCATGGATATGTTTCAGATGCAGCCCTGATA 897
||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 838 TCTATATTGGAGCTTCATAATTGGCAGCAGCATGGATATGTTTCAGATTCAGCCCTGATA 897
Query 898 CGTGATGGTGAAAATAAGCTTAGACCAATCACATTAGCATCGTTAATTGGTGTATGGAGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGTGATGGTGAAAATAAGCTTAGACCAATCACATTAGCATCGTTAATTGGTGTATGGAGG 957
Query 958 GTGAAATGTGGTGATGCTAATTGTGACGAGCCAGTGACTGGCGTGAACTTCATATCCGAA 1017
||||||| ||||||||| |||||||||||| ||| |||||| |||| |||||||||||||
Sbjct 958 GTGAAATATGGTGATGCCAATTGTGACGAGTCAGGGACTGGTGTGAGCTTCATATCCGAA 1017
Query 1018 GTTTCGGAAGAACTCTCTGTTCATCTTCAGAGTGGAATAATGAAAATAGCTAGAAGAGCT 1077
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 GTTTCGGAAGAACTCTCTGTTCATCTTCAGAGTGGAATAATAAAAATAGCTAGAAGAGCT 1077
Query 1078 CTACTCGATGAAATCATCAGCAGTGTGATTTCAGACTTTCTGAAGGCCAAGAAAAGTGAT 1137
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1078 CTACTTGATGAAATCATCAGCAGTGTGATTTCAGACTTTCTTAAGGCCAAGAAAAGTGAA 1137
Query 1138 GAGCATCTCAAGTCTTATCCACCCAC-T-T-CTG--C----TGTTGAATCCATATCGTCT 1188
|||||||||||||||||||||||||| | | ||| | |||||||||||||||||||
Sbjct 1138 GAGCATCTCAAGTCTTATCCACCCACTTCTGCTGCACATGTTGTTGAATCCATATCGTCT 1197
Query 1189 CGGGTTATTAATGCGGAGAAAAGTGTTGTCTCAAACACTGAATCTGCAGGCTGTAAGAAT 1248
| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 1198 CAAGTTATTAATGCGGAGAAAAGTGTTGTCTCAAACACTGAAACAACAGGCTTTAAGAAC 1257
Query 1249 ACAATGAATGAGGGGGGTCATAGTAGTATAGCTGCAGAGTCGTC-CAAATATACTAAATC 1307
| | |||||||| ||||||| ||||| |||||| |||||||| | |||||||||||||||
Sbjct 1258 ATATTGAATGAGTGGGGTCAGAGTAGCATAGCTACAGAGTCG-CTCAAATATACTAAATC 1316
Query 1308 TGTTGGAAGCATTGAGAACTTTCAGACATCTTGCTCAGCTGTGTGTAGAACGCTTCACCA 1367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1317 TGTTGGAAGCATTGAGAACTTTCAGACATCTTGCTCAGCTGTGTGTAGAACGCTTCACAA 1376
Query 1368 CCATTGCATGCAAATCATGTGGAATGCAGTCTTTTATGATACTGTGGCAACTCATTCATC 1427
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1377 CCATTGCATGCAAATCATGTGGAATGCTGTTTTTTATGATACTGTGGCAACTCATTCATC 1436
Query 1428 ATGTTGGAGAAAGAACAAAA-TTTGGTTTCGGTCTTCTGATATCTCGACTGTTAATTACT 1486
|| |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1437 ATCTTGGAGAAAGAA-AAAACTTTGGTTTCGGTCTTCTGATATCTCGACCCTTAATTACT 1495
Query 1487 GCAAAGGTTCCCATACAAAGTATTCAGACAAACCTGAATCATTTGAGAGTTTTACTTGTA 1546
||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 1496 GCAAAGGTTCCCATAGAAATTATTCAGACAAACCTGAAGCATTTAAGAGTTTTACTTGTA 1555
Query 1547 GGGTGGATTCCTCTTCCTCTAAAACTGCTTACTCTGATGAATTCGACTTAGCTACCAATG 1606
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 1556 GGGTGGATTCCTCTTCCTCTAAAACTGCTTACTCTAATGAACTCGACTTACCTACCAATG 1615
Query 1607 GAGCCAGAGTTCGTGGATTGTCATC------AG--A---TA-C---T--T-ATGGAACGG 1648
||||||| ||||||||| ||||||| || | || | | | ||||||| |
Sbjct 1616 GAGCCAGCGTTCGTGGAGTGTCATCTAGAAAAGTAACCTTACCAGATACTGATGGAACAG 1675
Query 1649 AAAGTGTCATAGCAAGCATCTCAGAACATGTTGAAAATGAACTCTTTCTGTCTCTTAAAA 1708
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1676 AAAGTCTCATAGCAAGCATCTCAGAACATGTTGAAAGTGAACTCTTTCTGTCTCTTGAAA 1735
Query 1709 CTCACCTAACTGATTATACTAGTATTCTCATTAAAGATGGAGCGAATAATACTACTAGTA 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1736 CTCACCTAACTGATTATACTAGTATTCTCATTAAAGATGGAGCGAATAATACTACTACTA 1795
Query 1769 -GTGCACGAGATGGCAAAATGCATGAGGGTTCCTTCCGTGAGCAGTATAATTTGGAAGGG 1827
| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct 1796 CG-GCACGAGATGGCAAAATGCATGAGGGTTCCTGCCGTGAACAGTATAATCTGGAAGGG 1854
Query 1828 TCTAGTAAAAAGAAGAATGGCTTAAATGTGGTTCCTGCTAAGTTGCGGTTTTCCAATGAT 1887
||| || ||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1855 TCTGGTGAAAAGCAGAATGACTTAAATGTGGTTTCTGTTAAGTTGCGGTTTTCCAATGAT 1914
Query 1888 TTCAGTGATTCTCAGAGACTGTTGCAAGAGGGAGAATCCTCCGAGCAAATCACATCTGAA 1947
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1915 TTCAGTGATTCTCAGAGACTGTTGCAAGAGGGAGAATCCTCTGAGCAAATCACATCTGAA 1974
Query 1948 GATATTATTGCTAATATTTTTAGTACAGCATTGGAGACATCAGATATTCCTGTTAATGAT 2007
|||||||| |||||||||||||||||| |||||||||||||||| |||||||||| ||||
Sbjct 1975 GATATTATCGCTAATATTTTTAGTACAACATTGGAGACATCAGACATTCCTGTTAGTGAT 2034
Query 2008 GAACTTGATGCTCTGGCCATTCATGAGCCACCACCACCTGGATGTGAAAGCAATATTAAT 2067
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2035 GAACTTGATGATCTGGATATTCATGAGCCACCACCACCTGGATGTGAAAGCAGTATTAAA 2094
Query 2068 ATGCCATGTCTGCGCTATAAGTATCAGCCTGTTAGGTCCAAGGAATCCATTCCAGAGATT 2127
||||||| |||||||| ||||| || |||||| |||||||||||||||||||||||||||
Sbjct 2095 ATGCCATCTCTGCGCTGTAAGTTTCGGCCTGTAAGGTCCAAGGAATCCATTCCAGAGATT 2154
Query 2128 AAAGCATATGTTTCAATGGCAT-TATGTAGACAGAAGTTGCACAATGATGTTATGAGAGA 2186
|||||||||||| ||| ||| | ||||||||||||||||||||| ||||||||||| |||
Sbjct 2155 AAAGCATATGTTGCAACGGC-TCTATGTAGACAGAAGTTGCACAGTGATGTTATGACAGA 2213
Query 2187 TTGGAAATCACTGTTCTTAAAGTGTTATCTCAACGAATTCCTTGCTTCACTGAAAGGAAG 2246
|||| |||||||||| | |||||| |||||||||||||||||||||||| ||| |||||
Sbjct 2214 GTGGATATCACTGTTCATGAAGTGTCATCTCAACGAATTCCTTGCTTCACGGAAGGGAAG 2273
Query 2247 CCATCAAGTTTCTCGTAAAGAAACATTGGCACTGAAGAAGCGCAAAACTGTTACTCGGAA 2306
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2274 CCATCAACTTTCTCGTAAAGAAACATTAGCACTGAAGAAGCGCAAAACTGTTACTCGGAA 2333
Query 2307 CAAAAAGCTGGTACAGTCTAATATATCAAATCAGACAGCAGAAAAGC-TAAGGAAACCAT 2365
||||||||| |||||||||||||| |||||||| |||||||| |||| || |||| ||||
Sbjct 2334 CAAAAAGCTAGTACAGTCTAATATTTCAAATCAAACAGCAGATAAGCCTA-GGAACCCAT 2392
Query 2366 GTGTCGGAGCGTCTGAA-AAAGTTCTGGTTAAACGATCTAAGAAACTGTCAGATTCTCAC 2424
|||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 2393 GTGTGGGATCGTCTGACGAAA-TTCTGGTTAAACGATCTAAGAAACTGTCAGATTTTCAT 2451
Query 2425 TCCATGAAAGAAGTCC-TTAAAGTCGATACACCCAGTATAGATTTGTCAGTTCGGAAACC 2483
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2452 TCCATGAAAGAAG-CCGTTAAAGTCGATACACCCAGTATAGATTTGTCAGTTCGGAAACT 2510
Query 2484 AAGTCAACAGAAGATGAGGAATACTGACCGGCGGGATCATTGTATCATAAAGGATGCGAC 2543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2511 AAGTCAACAGAAGATGAGGAATACTGAACGGCGGGATCATTGTATCATAAAGGATGCGAC 2570
Query 2544 GAAGCTCCATAAAGAAAAGGTTGGTAAAGATGCGTTTAGTAAGGTGATCTGTGATAAAAG 2603
|||| | || |||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 2571 GAAGTTTCAGAAAGAAAATGTTGCCAAAGATGCTTTTAGTAAGGTGATCTGTGATAAAAG 2630
Query 2604 CCAAGATCTTGAAATGGAAGATGAATTTGATGACGCACTCCTTATAACAAGACTAAGAAG 2663
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2631 CCAAGATCTTGAAAGGGCAGATGAATTTGATGACGAACTCCTTATAACAAGACTAAGAAG 2690
Query 2664 AATATCTAGGAATAAAACAAAAGAGTTAAGAGAATGTAGAAACGCTGCAAAATCATGTGA 2723
|||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||| |||||
Sbjct 2691 AATATCTAGGAATAAATCAAAAGAGTTAAGAGAACGTAAAAATGCTGCAAAATCCTGTGA 2750
Query 2724 GGAGATTTCAGTGACTGCTGAGGAATCTGAGGAAACCGTTGACTGCAAAGATCATGAGGA 2783
||||||||||||| ||||||| |||||||| |||||||||||| ||| ||||||||||||
Sbjct 2751 GGAGATTTCAGTGTCTGCTGAAGAATCTGAAGAAACCGTTGACCGCACAGATCATGAGGA 2810
Query 2784 GAGTCTTTCAAATAAGCCTTCTCAGAAAGTGAAAAAAGCTCATACATCAAAGCTAAAGAG 2843
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2811 AAGTCTTTCAAATAAGTCTTCTCAGAAAGTGCAAAAAGCTCATGTATCAAAGCTAAAGAG 2870
Query 2844 AAAGAATCTGTCAGATG-CTAGAGACGAAGGTACAAAATCTT---GCAATGGAGCAGTCA 2899
||||||| ||||||||| | |||| ||||||||||||||||| |||||||||| ||||
Sbjct 2871 AAAGAATATGTCAGATGTC-AGAGTCGAAGGTACAAAATCTTCTCGCAATGGAGCGGTCA 2929
Query 2900 AAAGTTTTACTGAGATTTCTGGAAAGGAGGGTGATA 2935
| |||||||||||||||||| |||| | | |||||
Sbjct 2930 GAGGTTTTACTGAGATTTCTGAAAAGAAAG-TGATA 2964
Score = 1611 bits (872), Expect = 0.0
Identities = 1129/1249 (90%), Gaps = 33/1249 (3%)
Strand=Plus/Plus
Query 3037 AATACCTCCCGCAAGTGCTTTACTAAATTACTATCTCCAGAAGATGCAGCGAAGAATGGT 3096
||| ||||| |||| ||||||||||||||||||||||||| || ||| |||||| | |||
Sbjct 3001 AATGCCTCCTGCAATTGCTTTACTAAATTACTATCTCCAGTAGTTGCTGCGAAGCACGGT 3060
Query 3097 CAGGATATGTCAAACCCTACTGGTAATCCTC-CAAGACTCGCTGAAGGAAAAAAGTTTGT 3155
||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 3061 CAGGATATGTCAAACCCTACTGGTAATCC-CGAAAGACTCGCTGAAGGAAAAAAAATTGT 3119
Query 3156 GGAAAAGTCTGCGTGCAGTATATCACAGAAGGGCCGTAAGTCGTCCCAATCCTCAATTCT 3215
||||||||| |||||| |||| ||||||| |||| | | ||| ||||| ||||| ||
Sbjct 3120 GGAAAAGTCAACGTGCAATATAGCACAGAA-GGCC-TCA-TCG---CAATCATCAATACT 3173
Query 3216 AAAAAGAAAGCACCAGTTGGATGAAAAAATCTCCAATGTACCTTCACGTCGGAGGTTATC 3275
||| |||||||||| || ||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 3174 AAAGAGAAAGCACCCGTCGGATGAAAAAATCCCCAGTGTACCTTCACGTCGGAAGTTATC 3233
Query 3276 TCTCTCTTCCACGGATTCTGAGGATGCTGTT----ATTAAG-GAAGACTATGATGTTCGA 3330
||| ||||||| ||||||||| |||| |||| || ||| |||| || | | |||
Sbjct 3234 TCTTTCTTCCAAGGATTCTGATGATGATGTTGGAAATGAAGAGAAG-CT-T-CCCTGCGA 3290
Query 3331 AATG-AAGAGAAGCTTC--CCTGTC-A-TACATCAGATAAGCTGCAAAAAGGTCCAAATA 3385
| | ||| ||||| | | | | | | | | | || | | | |||||| || |
Sbjct 3291 TACGTCAGATAAGCTGCAAAAAGGCAATTTCCT-ACA-AATTTTC--ATAGGTCCGAAGA 3346
Query 3386 AATTGATACGTAGAAGGAAGCCATTAGCAAAACATACAACAGAACGTTCTCCAATTAAGG 3445
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3347 AATTGATGCGTAGAAGGAAGCTATTAGCAAAACATACAACAGAACGTTCTCCAATTAAGG 3406
Query 3446 ATTTGTCAGTGGATGATGGCAGGCCTAAGCCGATTGCATTAAAACCATTGGAAAAACTGA 3505
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3407 ATTTGTCAGTGGATGATGGCAGGCCTAAGTCGATTGCATTAAAACCATTGGAAAAACTGA 3466
Query 3506 GTTCGAAACCAAGCAAGAAAAAGCTGTTTTTGTCAAT-CCCAAAGTCTGATGGATGTGCA 3564
|||| ||||||||||| |||||| |||| |||| || |||||||||||||||||||||
Sbjct 3467 GTTCAAAACCAAGCAAAAAAAAGGTGTTACTGTC-ATGTCCAAAGTCTGATGGATGTGCA 3525
Query 3565 CGCACATCTATTAATGGTTGGCATTGGCATGCATGGTCATTAAAGGCCAGTGCTGAAGAG 3624
|||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 3526 CGCACATCTATTAACGGTTGGCATTGGCGTGCATGGTCATTGAAGGCTAGTGCTGAAGAG 3585
Query 3625 AGAGCCCGTGTTAGGGGAAGTTCTTGC-GTACACATGCAACATTTTGGTTCCAAAAGTAG 3683
||| ||||||||||||||||||||| | ||||| || ||||||||||||||||||||||
Sbjct 3586 AGAACCCGTGTTAGGGGAAGTTCTT-CTGTACATATACAACATTTTGGTTCCAAAAGTAA 3644
Query 3684 TTTGACTCAGAACGTTCTTTCTGCAAGAACTAATAGGGCAAAACTGCGTAATCTTTTAGC 3743
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3645 TTCGACTCAGAACGTTCTTTCTGCAAGAACTAATAGGGCAAAAATGCGTAATCTTTTAGC 3704
Query 3744 TGCTGCAGATGGGGCTGATGTCTTGAAAATGTCTCAGTTGAAGGCTAGGAAAAAGCATTT 3803
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 3705 TGCTGCAGATGGGGCTGATGTCTTGAAAATTTCTCAGTTGAAGGCTAGGAAAAAGCGTTT 3764
Query 3804 ACGGTTTCAACAAAGCAAGATTCATGATTGGGGTCTTGTCGCACTTGAACCGATTGAAGC 3863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3765 ACGGTTTCAACAAAGCAAGATTCATGATTGGGGTCTTGTCGCACTTGAACCGATTGAAGC 3824
Query 3864 TGAAGACTTTGTGATCGAATATGTTGGAGAGTTGATACGTTCTTCTATATCTGAGATACG 3923
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3825 TGAGGACTTTGTGATCGAATATGTTGGAGAGTTGATACGTTCTTCTATATCTGAAATACG 3884
Query 3924 TGAACGCCAATATGAAAAGATGGGAATAGGAAGCAGTTATCTTTTCAGGCTTGACGATGG 3983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3885 TGAACGCCAATATGAAAAGATGGGAATAGGAAGCAGTTATCTTTTCAGGCTTGACGATGG 3944
Query 3984 CTATGTGCTTGATGCCACAAAGCGAGGTGGCATAGCGAGGTTTATCAACCATTCATGTGA 4043
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3945 TTATGTGGTTGATGCCACAAAGCGTGGTGGCATAGCGAGGTTTATCAACCATTCATGTGA 4004
Query 4044 GCCGAACTGTTACACCAAGATTATAAGCGTAGAAGGTAAGAAAAAGATATTCATTTATGC 4103
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 4005 GCCGAACTGTTACACCAAGATTATAAGCGTAGAGGGTAAGAAAAAGATATTCATTTATGC 4064
Query 4104 TAAGCGGCATATAGACGCCGGTGAAGAAATAAGTTACAACTACAAGTTCCCATTGGAGGA 4163
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 4065 TAAGCGGCATATAGACGCCGGTGAAGAAATAAGTTACAACTACAAGTTCCCACTGGAGGA 4124
Query 4164 CGACAAAATCCCCTGTAACTGTGGAGCGCCAAATGTGTATTGCTTTTGTGAGCAGGTGCC 4223
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 4125 TGACAAAATCCCCTGTAACTGTGGAGCGCAAAATATGTATTGCTTTTGTGAGCAGGTGCC 4184
Query 4224 GTGGATCGCTAAACTAAAAAGAAGGACGTGGTTTTCAAGACGAAACTGA 4272
||||||||||||||||| || ||||||| |||| | || ||| ||||
Sbjct 4185 GTGGATCGCTAAACTAAGGAG--GGACGTGTTTTTTA-GAGGAA-CTGA 4229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161554397385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5