BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42410.1

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494794 jgi|Araly1|494794|fgenesh2_kg.8__610__AT5G42410.1          510    2e-144


> Ahg494794 jgi|Araly1|494794|fgenesh2_kg.8__610__AT5G42410.1
Length=336

 Score =  510 bits (276),  Expect = 2e-144
 Identities = 318/338 (94%), Gaps = 4/338 (1%)
 Strand=Plus/Plus

Query  1    ATGAGAACCTTGGTGAAGAAGCTACTATGGTGCGGAGCGAAGAACATTTCATCTTCGAGA  60
            ||||||| | ||||||||||| |||||||||||||||||||||||| | | |||||||||
Sbjct  1    ATGAGAAGCGTGGTGAAGAAGTTACTATGGTGCGGAGCGAAGAACAATGCTTCTTCGAGA  60

Query  61   ACATCGGCATTACCAGAAGAAGGAAGAGTTCGGGTTTACGTAGGTAAAGATAAAGAGAGT  120
            ||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct  61   ACATCGGCATTACCAGAAGAAGGGAGAGTTCGGGTTTTCGTAGGTAAAGATAGAGAGAGT  120

Query  121  CAATGCAAGCTAGAAGTTGAAGCTAATTTGCTAAACCACCCAATGTTGGAAGATCTATTG  180
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  121  CAATGCAAGCTAGAAGTTGAGGCTAATTTGCTAAACCATCCAATGTTGGAAGATCTATTG  180

Query  181  AGGTTGTCTGAGGAAGAATTCGGACACTCGTACGAAGGAGCCTTGAGGATTGCTTGCGAG  240
            ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  181  AGGCTGTCTGAGGAAGAATTCGGACACTCGTATGAAGGAGCTTTGAGGATTGCTTGCGAG  240

Query  241  ATTGATGTCTTCATCAAACTGGTTAATCTACACAAAACAACTAATCATCATAACAATTC-  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  241  ATTGATGTCTTCATCAAACTGGTTAATCTACACAAAACAACTAATCATCATAACAATTCT  300

Query  300  CGTTTGCTT-TCACAATAATTCCACAAAATTATTGTAG  336
            | |||| || | ||||||||||||||||||||| ||||
Sbjct  301  C-TTTG-TTGTAACAATAATTCCACAAAATTATCGTAG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11904543768


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5