BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42420.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949044 jgi|Araly1|949044|scaffold_800931.1 1716 0.0
> Ahg949044 jgi|Araly1|949044|scaffold_800931.1
Length=1093
Score = 1716 bits (929), Expect = 0.0
Identities = 1041/1096 (95%), Gaps = 4/1096 (0%)
Strand=Plus/Plus
Query 143 TGGTGACAGTTGACCAGAGATGGCGGCGGAGAATGAGAGAAAATCTCCTTCAGCAGTCTC 202
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2 TGGTGAAAGTTGACCAGAGATGGCGGCGGAGAATGAGAGAAAATCTCCTTCTGCAGTCTC 61
Query 203 CGATATGGGAGCTTGGGCAATGAATGTGATAAGCTCCGTTGGAATCATCATGGCGAATAA 262
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 62 CGATATGGGAGCTTGGGCAATGAATGTGATAAGCTCCGTCGGAATCATCATGGCGAATAA 121
Query 263 ACAACTTATGTCCTCTTCTGGATTCGCATTTAGTTTCGCTACAACTCTCACCGGTTTCCA 322
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 122 ACAACTAATGTCTTCTTCTGGATTCGCATTTAGTTTCGCTACAACTCTCACCGGATTCCA 181
Query 323 CTTCGCTTTAACCGCATTGGTCGGTATGGTATCAAACGCTACCGGATTCTCTGCTTCGAA 382
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 182 CTTCGCTTTAACCGCATTGGTCGGTATGGTATCGAACGCTACCGGATTCTCTGCATCGAA 241
Query 383 GCATGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGC 442
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 242 GCATGTTCCTATGTGGGAGCTTATTTGGTTCTCCATTGTTGCTAATGTCTCTATCGCTGC 301
Query 443 TATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAATCTCGAAGCTGAGCAT 502
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 302 TATGAATTTCAGTCTCATGCTCAATTCCGTTGGATTTTACCAAATCTCGAAGCTGAGCAT 361
Query 503 GATTCCTGTGGTATGTGTAATGGAATGGATTCTACATAGCAAGAGATACTCAAGAGAAGT 562
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 362 GATTCCTGTGGTGTGTGTCATGGAATGGATTCTACACAGCAAGAGATACTCAAGAGAAGT 421
Query 563 GAAAATATCtgttgtggttgttgttgttggtgttgGTATTTGTACTGTGACTGATGTTAA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GAAAATATCTGTTGTGGTTGTTGTTGTTGGTGTTGGTATTTGTACTGTGACTGATGTTAA 481
Query 623 AGTTAATGCCAAAGGTTTTATCTGTGCTTGTGTTGCGATTTTCTCGTCATCCTTGCAGCA 682
||||||||||| || ||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 482 GGTTAATGCCAAGGGATTTATTTGCGCTTGTGTTGCGATTTTCTCGTCATCGTTGCAGCA 541
Query 683 AATTTTAATAGGTTCTCTACAGAAGAAATATTCAATTGGGTCCTTTGAGTTGTTGAGTAA 742
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 542 AATTTTAATTGGTTCTCTGCAGAAGAAATATTCAATTGGGTCTTTTGAGTTGTTGAGTAA 601
Query 743 AACAGCGCCGATTCAAGCTTTTTCGCTTCTTGTTGTCGGTCCTTTAGTTGATTATCTTCT 802
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AACAGCGCCGATTCAAGCTCTTTCGCTTCTTGTTGTCGGTCCTTTAGTTGATTATCTTCT 661
Query 803 TAGTGGGAAGTTCATTATGAAGTATAATATGTCTTCCGGTTGCTTTCTATTCATTCTTCT 862
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 662 TAGTGGGAAGTTCATTATGAACTACAATATGTCTTCCGGTTGCTTTCTATTCATCCTTCT 721
Query 863 CTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAGTACCTTTGCATCGGGCGGTTTTC 922
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTCGTGTGCTCTAGCTGTGTTCTGCAACATAAGCCAGTACCTTTGCATCGGGCGGTTTTC 781
Query 923 AGCAGTATCGTTCCAAGTTATTGGTCACATGAAAACCGTCTGTATCCTCACGCTTGGATG 982
|||||| |||||||| ||||| |||||||||||||| || || |||||||||||||||||
Sbjct 782 AGCAGTGTCGTTCCAGGTTATAGGTCACATGAAAACGGTGTGCATCCTCACGCTTGGATG 841
Query 983 GCTCCTATTTGATTCTGCAATGACTTTCAAAAACGTAGCGGGGATGATTGTTGCGATTGT 1042
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 842 GCTCCTTTTTGATTCTGCAATGACTTTCAAAAACGTAGCGGGCATGATTGTTGCGATTGT 901
Query 1043 TGGGATGGTAATCTATAGTTGGGCAATGGAATTGGAGAAACAGTCGATTATTGCAGCAAA 1102
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 902 TGGGATGGTAATCTATAGCTGGGCAATGGAATTGGAGAAACAGTCTATTATTGCAGCAAA 961
Query 1103 GGCTTTAAACAGTGTGAAACATAGCTTAACAGAGGAAGAGTTTGAACTTTTGAAGGAAGG 1162
|||||| |||||||||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct 962 GGCTTTGAACAGTGTGAAACACAGTTTAACAGAAGAAGAATTTGAACTATTGAAGGAAGG 1021
Query 1163 TGTAGAAACTACACAATCAAAAGATGTTGAACTTGGCCGCACAAAAGATTAGAGACAGAT 1222
|||||||||||| ||||| |||||||||||||||||||||||||||| |||| | |||||
Sbjct 1022 TGTAGAAACTACGCAATCGAAAGATGTTGAACTTGGCCGCACAAAAGCTTAG-G-CAGAT 1079
Query 1223 GGATAGAGAAAGAAAC 1238
||||||| || |||||
Sbjct 1080 GGATAGA-AA-GAAAC 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5