BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42430.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922218 jgi|Araly1|922218|scaffold_103499.1 353 1e-96
Ahg336216 jgi|Araly1|336216|fgenesh1_pg.C_scaffold_1002781 348 6e-95
Ahg922192 jgi|Araly1|922192|scaffold_103473.1 309 3e-83
Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046 305 4e-82
Ahg932493 jgi|Araly1|932493|scaffold_400481.1 279 2e-74
Ahg922294 jgi|Araly1|922294|scaffold_103575.1 178 9e-44
Ahg336202 jgi|Araly1|336202|fgenesh1_pg.C_scaffold_1002767 141 1e-32
Ahg923024 jgi|Araly1|923024|scaffold_104305.1 126 3e-28
Ahg336233 jgi|Araly1|336233|fgenesh1_pg.C_scaffold_1002798 126 3e-28
> Ahg922218 jgi|Araly1|922218|scaffold_103499.1
Length=959
Score = 353 bits (191), Expect = 1e-96
Identities = 669/887 (75%), Gaps = 83/887 (9%)
Strand=Plus/Plus
Query 274 GATTTTCATACGAAGTTCTCTCAAA-ACCT-A----A-ACATTTGTAACTATACTTCTGG 326
|||| ||||| |||||||||| ||| || | | | ||| ||||| |||| |||||||
Sbjct 19 GATTGTCATATGAAGTTCTCT-AAAGACATAAGCCCATACAATTGTACCTATGCTTCTGG 77
Query 327 TTTGGTATATTTCTCTGCT-ATGTGGATCACA-AAGGCAG-A--TGTCATATGTAACCCT 381
|||| | ||||| || | || ||||| | | | |||| | ||| ||||||||||||
Sbjct 78 TTTGATCTATTT-TC--ATAATATGGAT-A-ATGATGCAGTACGTGTGATATGTAACCCT 132
Query 382 AGCACGGGACATTATGCGATGTTACCT-AAATTG-TTGTTG-ACGTATGGAGAGACGAG- 437
||||| ||||| |||||||| |||||| | || | | ||||| || | | |
Sbjct 133 AGCACAGGACAGTATGCGATCTTACCTCTACCTGAAAGGAGAACGTACAGAAATTC-TGT 191
Query 438 AAGCttttttttGTTTGATCCGGTTGGCAAGC-AATTCAAGGTATTGCTCATGAATA--A 494
|||| ||| |||||||||| | | ||| | |||||||||||||| || |||||| |
Sbjct 192 TAGCTATTTAGGGTTTGATCCGATAGACAA-CGAATTCAAGGTATTGTTCCTGAATACTA 250
Query 495 GATAAA-C-A---ATAAT-GAAACAAAGGA-CATTCATATTTTGACATTGGGAACTAGAA 547
| |||| | | | | | | | | || |||| ||||||||||| | |||||| | |
Sbjct 251 G-TAAATCTATCGCTTCTAGTGATATA-GATCATT-ATATTTTGACACTAGGAACTGGGA 307
Query 548 AAGTGAGATGGAGGAAGATCCAACAATGCCCCTTGATCCAT-ATTGTTTCGCATGAATGG 606
|| |||| ||||||||||| || || || || | |||| | ||| | ||| ||
Sbjct 308 AATTGAGGTGGAGGAAGAT---TCAGTGTCCTTTTACCCATGAGCCTTT-GTGGGAAAGG 363
Query 607 ATATGCATCAATGGGGCTTTGTATTACATAGCTTATAACATTG-ATG-ATTTCTTGGGGT 664
|||||||||||||||| |||||||||| ||||| || | || | | | | || |
Sbjct 364 ATATGCATCAATGGGGTTTTGTATTACTTAGCTCAT-TC--TGAAAGAAAGTATT-ATGC 419
Query 665 ATATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTAAATCT-AA--ACCAAG 721
| |||||||||||||||| || || ||||||||| || | || || | || | ||
Sbjct 420 GT-TAGTTTGCTTTGATGTTAGATCTGAGAAATTC-AA-G-CT-CAT-TGAATTA-GAAT 472
Query 722 ACT-GTTT--TTCTGAACGATC--TACTAAATTGATATACTATAAAGGTAAATTAGGTGT 776
| | |||| | || || || || | || ||||| ||||||| ||||||||| |||
Sbjct 473 A-TCGTTTGGAT-TG-CCG-TCTTTA-TGAACTGATAAACTATAAGGGTAAATTATGTGG 527
Query 777 GGTTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGGTTCT 836
||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||
Sbjct 528 GGTTAATTTGAAGTATGCTTATGGTGGTGGATTTCCCCTTGAGTTACGTATGTGGGTTCT 587
Query 837 AGAGGATGTGGAGAAACAGGAATGGACAACATCTGTGTACACTTTGAGGGATGAGGATAG 896
||||||||| |||||| |||||||||| ||| || |||||||||||||||||| |||
Sbjct 588 AGAGGATGTCGAGAAAGAGGAATGGACGTCATATGCCTACACTTTGAGGGATGAGAATAA 647
Query 897 AGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGGTGAAATTGT 956
|||| |||||||| ||||| |||||| |||||||| | |||||| |||||||||||||
Sbjct 648 AGTCTTTAAGGTTAACTACAATCTTTCCGTTGTTGGGGTGACTGCTTCAGGTGAAATTGT 707
Query 957 TTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAATCTCGAAAGGAA 1016
||||| ||| | || || ||| ||||| ||||| ||||||||||||| | |||||||
Sbjct 708 TTTGGTGAACCATAATACATCTAAACCGTTATATGTTTTCTACTTTAATCCCAAAAGGAA 767
Query 1017 CACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAG--AA---T--A-C--CAAAG-CT-G 1064
|||| ||| || ||||||||||||| ||||||||| || | | | ||| || |
Sbjct 768 CACTTTCCAAAATGTTGAAATCCAAAGTTTTGGAGCTAAGGGTGAAGCGTTTAAGACTAG 827
Query 1065 TTGTAGT-GTTCACGCCTTTGTAGACCATGTAGAGGATCTTAATGTT 1110
|| | | ||| ||||||||||||||||||||||||||||||| |||
Sbjct 828 TT-TCCTAGTTGACGCCTTTGTAGACCATGTAGAGGATCTTAA-GTT 872
> Ahg336216 jgi|Araly1|336216|fgenesh1_pg.C_scaffold_1002781
Length=846
Score = 348 bits (188), Expect = 6e-95
Identities = 537/696 (77%), Gaps = 61/696 (9%)
Strand=Plus/Plus
Query 450 GTTTGATCCGGTTGGCAA-GCAATTCAAGGTATTGCT-CATG---AA-TAAGATAAACAA 503
|||||||||| |||| || | ||| ||||||||| | |||| || | || |||| |
Sbjct 129 GTTTGATCCGATTGGTAATG-AATGGAAGGTATTG-TCCATGAACAATTTAGCTAAA-GA 185
Query 504 TAATGAAACAAAGG-ACATTCATATTTTGACATTGGGAACTAG-AAAAGTGAGAT-G-GA 559
| ||| | ||||| |||| ||||| ||||||| |||||| | ||||||||||| | ||
Sbjct 186 TTATG--A-AAAGGCTCATT-ATATTCTGACATTAGGAACT-GAAAAAGTGAGATGGAGA 240
Query 560 --G-GA-AGATCCAACAATGCCCCTTGATCCAT-ATTGTTTC-GCATGAATGGATATGCA 613
| || ||||||||| | ||||| | |||| | | ||| | || | |||||||||
Sbjct 241 TGGAGAGAGATCCAAC---GTCCCTTCAACCATGA-T-CTTCAGGGTGCAGGGATATGCA 295
Query 614 TCAATGGGGCTTTGTATTACATAGCTTA-TAACATTGATGATT-TCT-TGGGGTATATAG 670
| | ||||| |||||||||| ||||||| || | |||||||| | | || |||||
Sbjct 296 TTAGTGGGGTTTTGTATTACCTAGCTTACGAA-AGTGATGATTGGATAT-ATGT-TATAG 352
Query 671 TTTGCTTTGATG-TCAGGTCCGAGAAATTCAAATGTCTAAATCTAAACCAAGACTGTTTT 729
||||||||||| || | |||||| |||||| | ||||||||| | |||| |
Sbjct 353 GTTGCTTTGATGTTC-GAACCGAGACATTCAAGTCTCTAAATCT-----GA-ACTGCTCA 405
Query 730 TCTGAACGATCTACTAAATTGATATACTATAAAGGTAAATTAGGTGTGGTTAATTTGAAG 789
| || | | ||| ||| ||||||| ||||||| ||||||||||||||| ||||||||| |
Sbjct 406 TATGGATGGTCTTCTACATTGATAAACTATAAGGGTAAATTAGGTGTGATTAATTTGAGG 465
Query 790 TATGCTC-ATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGGTTCTAGAGGATGTGGA 848
|||| | ||| | | |||||||||| ||||| ||||| ||||||||||||| | ||
Sbjct 466 CATGC-CAATGATGTTATATTTCCCCTTCAGTTAAGTATGACGGTTCTAGAGGATTTCGA 524
Query 849 GAAACAGGAATGGACAACATCTGTGTACACTTTGAGGGATGAGGATAGAGTCGTTAAGG- 907
||||||||||||| |||||| ||| |||||||||| || |||| ||| |||||||||||
Sbjct 525 GAAACAGGAATGGTCAACATATGTCTACACTTTGATGGCTGAGAATATAGTCGTTAAGGA 584
Query 908 TTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGGTGAAATTGTTTTGGCGAAGA 967
|| || || ||| |||||||| | ||||||||||||||||||||||||| ||| |
Sbjct 585 GAAAC-ACTATGTTTCCGTTGTTGGGGTGACTGCTACAGGTGAAATTGTTTTGGTGAATA 643
Query 968 AAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAATCTC-GAAAGGAACACTCTCCTA 1026
| || | ||| || ||||||||||| ||||||||||| | | ||||| |||||||| ||
Sbjct 644 AGAATGCATGCAAACCGTTTTATGTGTTCTACTTTAAGC-CGGAAAGTAACACTCTTCTG 702
Query 1027 AGTGTTGAAATCCAAGGTTTTGGAGAATA-C-CAAA--G-----CTGTT-GTAGTGTTCA 1076
|||||||||||||||||| |||||||| | | |||| | || || || |||
Sbjct 703 AGTGTTGAAATCCAAGGTGTTGGAGAAGACCACAAATGGTTCAACT-TTCATACAGTTTG 761
Query 1077 CGCCTTTGTAGACCATGTAGAGGATCTTAATGTTTA 1112
|||||||||||||||||||||||||||| | |||||
Sbjct 762 CGCCTTTGTAGACCATGTAGAGGATCTTCA-GTTTA 796
> Ahg922192 jgi|Araly1|922192|scaffold_103473.1
Length=973
Score = 309 bits (167), Expect = 3e-83
Identities = 582/770 (76%), Gaps = 78/770 (10%)
Strand=Plus/Plus
Query 366 TGTCATATGTAACCCTAGCACGGGACATTATGCGATGTTACCTAAATTGTTGTTGACGTA 425
||| ||||||||||||||||| ||||| | |||||| ||||||||| || ||| |
Sbjct 134 TGTGATATGTAACCCTAGCACCGGACACTGTGCGATCTTACCTAAA---CTGAAAACGGA 190
Query 426 TGGAGAGACGAGAAGCttttttttGTTTGATCCGGTTGGCAAGCAATTCAAGGTATTGCT 485
| | |||| ||||||| ||| |||||||||| ||| ||||||||||||||| ||| |
Sbjct 191 TATACAGACAAGAAGCTATTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTGTTGAT 250
Query 486 CATGAATAAG-ATAAACAATAATGAAACAAAGG-ACATTCATATTTTGACATTGGGAACT 543
|||| || | ||| |||| || | || || || || |||| ||||||| ||||||
Sbjct 251 CATG-ATGGGTATATTTAATAGTG--A-AAGGGTCCA-TCGTATTCTGACATTAGGAACT 305
Query 544 AGAAAAGTGA-GATGGAGGAAGATCCAACAATGCCCCTTGATC-CA-TATTGTTTCGCAT 600
||||| ||| | |||||||| || | |||||||| || | | | ||| ||| || |
Sbjct 306 GGAAAAATGACG-TGGAGGAATAT-C--CAATGCCCTTTTA-CTGAGTATCCTTT-GCTT 359
Query 601 GAATGGATATGCATCAATGGGGCTTTGTATTACATAG--C-TTATAAC-ATTG-ATG--A 653
|| |||||||||||||||||| |||||||||| ||| | |||| | | || | | |
Sbjct 360 AAAGGGATATGCATCAATGGGGTTTTGTATTACTTAGCACAATATATCGA-TGAACGAAA 418
Query 654 T-TTCT-TGGGGTAT-ATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTAAA 710
| | | || ||| ||||||||| ||||||| ||||||||||||||| || | |
Sbjct 419 TCATATATGTTATATGATAGTTTGCCTTGATGTTAGGTCCGAGAAATTC-AA-G--T--- 471
Query 711 TC-TAAAC-CAAGACTG-TTTTTCTGAACGATCTACTAAATTGATATACTATAAAGGTAA 767
|| || || ||| ||| || || | | | | | |||||||| ||||||| || ||
Sbjct 472 TCGTAGACGCAA-TCTGCTTGTT-T---C-A--T-C--AATTGATAAACTATAAGGGGAA 520
Query 768 ATTAGGTGTGG-TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTA 826
|||||||| || |||||||||| || | || ||||||||||||| | | ||
Sbjct 521 ATTAGGTG-GGATTAATTTGAACTA--C-AAT---AATGGATTTCCCCTT-A---A--TA 567
Query 827 TGTGGGTTCTAGAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAGG 885
||||||||||||| ||||| |||||||| |||||| | || || ||| ||| ||||| |
Sbjct 568 TGTGGGTTCTAGAAGATGTCGAGAAACAAGAATGGTCGAA-ATATGTATACTCTTTGTGT 626
Query 886 GATGAGGA-TAGAGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTAC 944
| ||| || || ||||||||||||| || | | |||| | |||||||||| ||||||||
Sbjct 627 GCTGA-GAGTAAAGTCGTTAAGGTTAACCCCAAGCTTTCTGTTGTTGGGATGACTGCTAC 685
Query 945 AGGTGAAATTGTTTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAA 1004
|||||| || |||||| || ||| ||| ||| || |||||||| || ||||| ||
Sbjct 686 AGGTGATATAGTTTTGTCGGGGAAGTTTATATCTAATCCATTTTATGTTTTTTACTTCAA 745
Query 1005 TCTCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAATACCAAAGCTG 1064
|| ||||||||||||||||||||||||||||||| ||||| ||| | || | | |
Sbjct 746 TCCCGAAAGGAACACTCTCCTAAGTGTTGAAATCAAAGGTCTTG-ATTAT-CTT--G--G 799
Query 1065 TTGTAGTGTTCACGCCTTTGTAGACCATGTAGAGGATCTTAATGTTTACG 1114
| | ||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 800 TAG-AGT-TTC-CGTCTTTGTAGACCATGTAGAGGATCTTAATGTTTACG 846
> Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046
Length=1011
Score = 305 bits (165), Expect = 4e-82
Identities = 366/462 (79%), Gaps = 18/462 (4%)
Strand=Plus/Plus
Query 606 GATATGCATCAATGGGGCTTTGTATTACATAGCTTATAACATTG-ATG--ATTTC-T-TG 660
||||||||| ||||||| |||||||||||||||||| || ||| | | | || | ||
Sbjct 255 GATATGCATTAATGGGGTTTTGTATTACATAGCTTACGAC-TTGCAGGACAGCTCGTATG 313
Query 661 GGGTATATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTAAATCTAAACCAA 720
|| |||| ||||||| |||| |||| ||||||||||| | | || || |||| |
Sbjct 314 ATGT-GATAGGTTGCTTTCATGTTAGGTTTGAGAAATTCAAGTTTTTACATGTAAATTAT 372
Query 721 GACTGTTTTTCTGAAC-GATCTACTAAATTGA-TATACTATAAAGGTAAATTAGGTGTGG 778
|| | | | | || | | | ||| | || ||||||| || |||||||||| ||
Sbjct 373 GA-T-ATGAT-AG-ACTCTTTTTGTGTATT-AGTAAACTATAAGGGCAAATTAGGTG-GG 426
Query 779 -TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGGTTCTA 837
|| ||| | |||||||| ||| ||||||||||| ||| |||||| |||||||||||||
Sbjct 427 ATTTATTGGGAGTATGCTGATGATGGTGGATTTCCTCTTGAGTTATCTATGTGGGTTCTA 486
Query 838 GAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAGGGATGAGGATAG 896
|||||| | |||||| | |||||| | | || || |||||||||| || ||| ||||
Sbjct 487 GAGGATCTTGAGAAAAATGAATGGTCGGA-ATATGCCTACACTTTGAAGGCTGATAATAG 545
Query 897 AGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGGTGAAATTGT 956
|||||||||||| ||||| |||||| | |||||||| | ||||||| ||||||||||||
Sbjct 546 CGTCGTTAAGGTTAACTACAATCTTTCTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGT 605
Query 957 TTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAATCTCGAAAGGAA 1016
|||||| ||| | | | |||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 606 TTTGGCCAAGCAGTATGCATGTAAACCGTTTTATGTTTTCTACTTTAATCCCGAAAGGAA 665
Query 1017 CACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAATACCA 1058
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct 666 CACTCTCCTAAGTGTTGAAATCCAAGGTGTTGGAGAAGACCA 707
> Ahg932493 jgi|Araly1|932493|scaffold_400481.1
Length=1181
Score = 279 bits (151), Expect = 2e-74
Identities = 548/725 (76%), Gaps = 86/725 (12%)
Strand=Plus/Plus
Query 370 ATATGTAACCCTAGCACGGGACATTATGCGATGTTACCTAAATTGTTGTTGACG-TATGG 428
||||||||||||||||| ||||| |||| ||| |||||| || || || | || |
Sbjct 139 ATATGTAACCCTAGCACAGGACAATATGTGATTTTACCTGAA---TT-AAGAAGTTACCG 194
Query 429 AGAGACGAGAAGCtttttt-ttGTTTGATCCGGTTGGCAAGCAATTCAAGGTATTGCTCA 487
| || || |||| |||||| ||||||||| ||| ||||||||||||||||||| |||
Sbjct 195 ACAGGCGGGAAG-TTTTTTAGGGTTTGATCCCATTGACAAGCAATTCAAGGTATTGGTCA 253
Query 488 TGAATAAGATAAACAATAATGAAACAAAGGA-CATTCATATTTTGACATTGGGAACTAGA 546
|| | | | || ||| | || || ||||||||||||| | |||||| ||
Sbjct 254 TGTCT-TG-T---GTAT-ATG------ATGATCA-TCATATTTTGACACTAGGAACTGGA 300
Query 547 AAAGTGAGATGGAGGAAGATCCAACAATGCCCCTTGATCCAT-ATTGTTTCGCATGAATG 605
||| |||| ||||||||||| | ||||| ||||| | |||| | |||| | |||| |
Sbjct 301 AAAATGAGTTGGAGGAAGAT-C--CAATGTCCCTTAAGCCATGAGCGTTTAG-GTGAA-G 355
Query 606 -GATATGCATCAATGGGGCT-TTGTATTACATAGCTTA-TAACATTGATGA-T-TTCTTG 660
| |||| ||||||||||| || | ||| |||| || || | |||||| | |||||
Sbjct 356 CAAAATGCTTCAATGGGGCTGTT-TTTTATTTAGC-TAGAAAAACTGATGACTGGTCTTG 413
Query 661 -GGGTATATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTA-A-AT-CTAAA 716
||| ||||||||||||||||||||||| ||||| ||| |||| || | || | |||
Sbjct 414 TGGG---ATAGTTTGCTTTGATGTCAGGTCTGAGAAGTTC--ATGTTTATAGATGC-AAA 467
Query 717 CCAAGACT-GTTTTTC-TGAACGATCTACTA-AATTGATATACTATAAAGGTAAATTAGG 773
| | | || |||| | || | ||| | |||||||| ||||||| |||||||||||
Sbjct 468 AC-ACTTTGGTGTTTCAT-TAC-A--TAC-ACAATTGATAAACTATAAGGGTAAATTAGG 521
Query 774 TGTGG-TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTGGG 832
|| || ||| ||| ||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 522 TG-GGATTAGTTTAAAGTATGCTTGTGATGGTGGATTTCCCCTTGAGTTATGTATGTGGG 580
Query 833 TTCTAGAGGATGTGGAGAAACAGGAA-TGGAC-AACATCTGTGTACACTTTG-AGGGATG 889
||||||||||||| ||||||| | || ||| || || ||| ||||||||| ||| ||
Sbjct 581 TTCTAGAGGATGTCGAGAAAC-GTAAATGGTTGAA-ATATGTCTACACTTTGCAGGC-TG 637
Query 890 AGGATAGAGTC--GTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTACAGG 947
| ||| | || ||||||||| | || |||||||| ||||||||| |||||||||||
Sbjct 638 ATAATA-A-TCTAGTTAAGGTTAAAAACAATCTTTTTGTTGTTGGGACGACTGCTACAGG 695
Query 948 TGAAATTGTTTTGGCGAAGAA-AAAGGTA-TGT-A--AG---C-C---------GTTTTA 989
||||||||||||| ||||| | ||||||| | | | | | | ||||||
Sbjct 696 TGAAATTGTTTTGTCGAAGGATAAAGGTAGTATCATCATAAACACTATTAAACCGTTTTA 755
Query 990 TGTCTTCTACTTTAATC-TCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTG 1048
||| |||||||| |||| | |||| |||||||||||| |||||||||||||||| ||| |
Sbjct 756 TGTTTTCTACTTCAATCCT-GAAAAGAACACTCTCCTTAGTGTTGAAATCCAAGATTTGG 814
Query 1049 GAGAA 1053
| |||
Sbjct 815 G-GAA 818
> Ahg922294 jgi|Araly1|922294|scaffold_103575.1
Length=938
Score = 178 bits (96), Expect = 9e-44
Identities = 524/714 (73%), Gaps = 96/714 (13%)
Strand=Plus/Plus
Query 444 ttttttG-TTTGATCCGGTTGGCAAGCAATTCAAGGTATTGCTCATGAATAAGATAAA-- 500
||||| | ||||||||| | | |||||||||||| || ||| | ||||| | |||||
Sbjct 116 TTTTTGGATTTGATCCGATCGACAAGCAATTCAAAGTGTTGGTAATGAA-CA-ATAAAGT 173
Query 501 CAATAATGAAACAAAGGACATTCATATTTTGACATTGGGAACTAGAAAAGTGAGATGGAG 560
|||||| ||| || ||| ||||||||||||| |||||| ||||| |||| |||||
Sbjct 174 TTATAATGGAAC---GGGTATTAATATTTTGACATTAGGAACTGGAAAAATGAGGTGGAG 230
Query 561 GAAGATCCAACAATGCCCCTTGAT-CCATATTGTTTCG-CATGAATGGATATGCATCAAT 618
|||||| | | || ||||| || ||||| |||| | |||| |||||||| |||||
Sbjct 231 GAAGAT-C--CGTTGTCCCTT-ATCCCATAAGGTTT-GTGGTGAAGGGATATGCGTCAAT 285
Query 619 GGGGCTTT-GTATTACATAGCTTATAACATTGAT-----G----A-T-T-T-CTTG--G- 661
|| | ||| |||||| |||||| || |||||| | | | | | ||| |
Sbjct 286 GGAG-TTTGGTATTATTTAGCTTGCAAAATTGATGAAGAGTATTATTATGTGATTGATGA 344
Query 662 -G-G---TA--T-ATAGTTTGCTTTGATGTCAGGTCCGAGAAATTCAAATGTCTAAAT-C 712
| | || | ||||||||||||||||| |||| ||||||||||| | | || || |
Sbjct 345 AGAGTCTTATGTGATAGTTTGCTTTGATGTTGGGTCTGAGAAATTCAAGTTTATAGATGC 404
Query 713 TAAACCAAGACTGTTTTTCTGAACGATCTACTAAATTGA-TATACTATAAAGGTAAATTA 771
||| | | | || | | | || ||||| ||||| || ||||||| |||||||||
Sbjct 405 -AAA--ATG-C-ATTGGGC-G-A-GA--TACTACATTGATTA-ACTATAAGGGTAAATTA 453
Query 772 GGTGTGG-TTAATTTGAAGTATGCTCATGGCGGTGGATTTCCCCTTAAGTTATGTATGTG 830
|||| || || | ||| || || | | || ||| | || | |||||||||||||
Sbjct 454 GGTG-GGATTGA-TTG-GGT-TGAT-A-GG-GGT--A----ACCGTGAGTTATGTATGTG 500
Query 831 GGTTCTAGAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAGGGATG 889
||||||||||||||| ||||||||| ||||| | || || ||| ||||||||| ||| |
Sbjct 501 GGTTCTAGAGGATGTCGAGAAACAGAAATGGTCGAA-ATATGTTTACACTTTGCCGGAGG 559
Query 890 AGGATAGAGTCGTTAAG-GT-TTACTACGATCTTTT-TATTGTTGG-GATAACTGCTACA 945
| || || || | || | ||| || || | || | ||||||| | | || |||| |
Sbjct 560 ATGA-AG--TCCT-AATTGAATTAG-ACAAT-TATTATGTTGTTGGAG-TGACAGCTAGA 612
Query 946 GGTGAAATTGTTTTGGCGAAGAAAAAGGTAT--GT-AAGCCGTTTTATGTCTTCTACTTT 1002
|||||| |||||||| ||| |||| | || || || ||||||||||| || | |||
Sbjct 613 GGTGAAGTTGTTTTGTCGAGGAAAC-G-TACACGTGAA-CCGTTTTATGTTTTTTTCTTC 669
Query 1003 AATCTCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAAT-ACCAAAG 1061
|||| ||||||||||||||||| ||| ||||||||||||||||| |||| | ||| |||
Sbjct 670 AATCCCGAAAGGAACACTCTCCAAAGGGTTGAAATCCAAGGTTTGGGAGG-TGACCGAAG 728
Query 1062 -CTGTT-G-TAGTGTTCACGCCTTTGTAGACCATGTAGAGGATCTTAATGTTTA 1112
| ||| | || | || || |||||||||| |||||||| ||||||| |||||
Sbjct 729 ACGGTTTGATA-T-TT-ACACCTTTGTAGATCATGTAGAAGATCTTAC-GTTTA 778
> Ahg336202 jgi|Araly1|336202|fgenesh1_pg.C_scaffold_1002767
Length=384
Score = 141 bits (76), Expect = 1e-32
Identities = 229/299 (77%), Gaps = 25/299 (8%)
Strand=Plus/Plus
Query 826 ATGTGGGTTCTAGAGGATGTGGAGAAACAGGAATGGAC-AACATCTGTGTACACTTTGAG 884
|||| ||||||||||||||| |||||| ||||||| | || || ||| ||||||||
Sbjct 1 ATGTCGGTTCTAGAGGATGTCGAGAAATTGGAATGGTCGAA-ATATGTCTACACTTT--- 56
Query 885 GGATGAGGATAGAGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGATAACTGCTAC 944
| | | || || | || ||| | |||| || ||||| | ||||| || || ||||
Sbjct 57 GCCTCACAAT-GA--CATT--GGTGT-CTACAATGTTTTTGTCGTTGGTATGACGGCTAG 110
Query 945 AGGTGAAATTGTTTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTTCTACTTTAA 1004
||||||||||||||||||| |||| | || || || |||||||| || ||||| ||
Sbjct 111 AGGTGAAATTGTTTTGGCGGAGAAGTATACATCAAAACCATTTTATGTTTTGTACTTCAA 170
Query 1005 TCTC-GAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAG--AA---T--A- 1055
|| | |||| ||||||| ||| ||||||||||||||||||| |||||| || | |
Sbjct 171 TC-CGGAAAAGAACACTATCCAAAGTGTTGAAATCCAAGGTGTTGGAGCTAACGGTGAAG 229
Query 1056 C--CAAAG-CTG-TTGTAGTGTTCACGCCTTTGTAGACCATGTAGAGGATCTTAATGTT 1110
| || ||| |||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 230 CGTTTGAGACTGATTGTAGAGTTTACGCCTTTGTAGACCATGTAGAGGATCTTAGTGTT 288
> Ahg923024 jgi|Araly1|923024|scaffold_104305.1
Length=970
Score = 126 bits (68), Expect = 3e-28
Identities = 187/241 (78%), Gaps = 21/241 (9%)
Strand=Plus/Plus
Query 827 TGTGGGTTCTAGAGGATGTGGAGAAACAGGAATGG-ACAACATCTGTGTACACTTTGAGG 885
|||||||||||||||||| |||||||||||||||| | || || ||||||||||||
Sbjct 556 TGTGGGTTCTAGAGGATGCGGAGAAACAGGAATGGTTGGA-ATATGCCTACACTTTGAGG 614
Query 886 GATGAGGATAGAGTCGTTAAGGTTTACTACGATCTTTTTATTGTTGGGA-TAACTGCTAC 944
||| |||| | || || | | | | |||| ||| | | ||||| | |||||| |
Sbjct 615 GAT---GATAAATTC-TT-A-GATCATTACG---TTTCCGTCG-TGGGAGTGACTGCTTC 664
Query 945 AGGTGAAATTGTTTTGGCGA-AGAAAAAGGT--ATGT--A-AGCCGTTTTATGTCTTCTA 998
||||||||||||||| ||| | | | | || | | | || |||||||| |||||
Sbjct 665 GGGTGAAATTGTTTTGTCGATGGGAGATTTTACATTTAAACAACCCTTTTATGTTTTCTA 724
Query 999 CTTTAATCTCGAAAGGAACACTCTCCTAA-GTGTTGAAATCCAAGGTTTTGGAGAATACC 1057
||| |||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 725 CTTCAATCCCGAAAAGAACACTCTCC-AACGTGTTGAAATCCAAGGTTTTGGAGAATACC 783
Query 1058 A 1058
|
Sbjct 784 A 784
> Ahg336233 jgi|Araly1|336233|fgenesh1_pg.C_scaffold_1002798
Length=840
Score = 126 bits (68), Expect = 3e-28
Identities = 95/108 (88%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 947 GTGAAATTGTTTTGGCGAAGAAAAAGGTATGTAAGCCGTTTTATGTCTT-CTACTTTAAT 1005
|||||||||||||||||||| ||| |||| || ||||||||||| || ||||||||||
Sbjct 494 GTGAAATTGTTTTGGCGAAGGGAAATGTATACAATCCGTTTTATGT-TTACTACTTTAAT 552
Query 1006 CTCGAAAGGAACACTCTCCTAAGTGTTGAAATCCAAGGTTTTGGAGAA 1053
| ||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 553 CCCGAAAAAAACACTCTCCTAAGTGTTGAAATCCAAGGTGTTAGAGAA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5