BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42440.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949043 jgi|Araly1|949043|scaffold_800930.1 1587 0.0
> Ahg949043 jgi|Araly1|949043|scaffold_800930.1
Length=1116
Score = 1587 bits (859), Expect = 0.0
Identities = 1039/1126 (92%), Gaps = 11/1126 (1%)
Strand=Plus/Plus
Query 41 TACTGATCCC-AAACACTATCCATGGATTACCAAATCTCACTAATCCTAGCCACCAGCAT 99
|||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TACTAATCCCAAAACAGTATCCATGGATTACCAAACCTCACTAATCCTAGCCACCAGCAC 60
Query 100 AAGCTCCATCTTCCTCTTGCTTATCGTCTTCACCGTCGTTATGATCGTATGTCGCCGTCG 159
||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||
Sbjct 61 AAGCTCCATCTTCCTCTTGCTAATCTTCTTCACCGTCGTTATGTTGGTATGTCGCCGTCG 120
Query 160 TCCTCCAATCCAAAACCATCCTCGCCGGAATCGTAACTTCCCCGACCCCGATCCCGATCT 219
|||||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 121 TCCTCCAATCGAAAACCATCCTCGCCGGAATCTTAACTT------CCCCGATCCCGATCT 174
Query 220 AAACACGGAAACAGTAACCGAAAGCTTCGATCCATCAATCTGTGAAATATCCATGGCGGA 279
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 175 AAACACGGAAACCGTAACCGAAAGCTTTGATCCATCAATCTGTGAAATATCCATGGCGGA 234
Query 280 ACTCACTATAGCAACTAAAAACTTCTCATCGGATCTTATCGTCGGCGACGGAAGTTTCGG 339
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 235 ACTCACTATAGCAACCAAAAACTTCTCATCTGATCTAATCGTCGGCGACGGAAGTTTCGG 294
Query 340 TCTCGTTTATCGAGCTCAGCTCTCAAACGGCGTCGTAGTCGCCGTTAAAAAGCTCGATCA 399
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTCGTTTATAAAGCTCAGCTCTCAAACGGCGTCGTAGTCGCCGTTAAAAAGCTCGATCA 354
Query 400 CGACGCTTTACAAGGATTCCGAGAATTCGCAGCCGAAATGGACACTCTAGGTCGTCTCAA 459
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 355 CGACGCTTTACAAGGATTCCGTGAATTCGCAGCTGAAATGGACACTCTAGGTCGTCTCAA 414
Query 460 TCACCCAAACATAGTTAGGATCCTCGGTTATTGCATCTCGGGATCAGATCGGATTCTTAT 519
||||||||||||||| |||| ||||||||||| ||||| |||| ||||||||||| ||
Sbjct 415 ACACCCAAACATAGTTCGGATTCTCGGTTATTGTATCTCCGGATTGGATCGGATTCTGAT 474
Query 520 CTACGAGTTCTTAGAGAAAAGTAGTCTTGACTATTGGTTACACGAGACTGACGAAGAGAA 579
||||||||||||||||||||||| || || |||||||||||||||||||| || |||||
Sbjct 475 TTACGAGTTCTTAGAGAAAAGTAGCCTCGATTATTGGTTACACGAGACTGATGATGAGAA 534
Query 580 CAGTCCATTGACTTGGTCAACGCGCGTGAATATCACGCGCGATGTGGCCAAGGGTTTAGC 639
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAGTCCATTGACTTGGCCAACGCGCGTGAATATCACGCGCGATGTGGCCAAGGGTTTAGC 594
Query 640 TTATCTGCATGGTTTACCGAAACCAATTATACATAGAGATATCAAATCGAGTAATGTGCT 699
|||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||||| |
Sbjct 595 TTATCTTCATGGACTACCGAAGCCGATTATTCATAGAGATATTAAATCGAGTAATGTGTT 654
Query 700 GTTGGATTCGGATTTCGTGGCGCATATTGCGGATTTCGGATTGGCGCGAAGGATCGATGC 759
||||||||||||||| || || ||||| ||||||||||| |||||||| || || ||||
Sbjct 655 GTTGGATTCGGATTTTGTTGCACATATAGCGGATTTCGGGTTGGCGCGTAGAATGGATGA 714
Query 760 GTCGAGGTCGCATGTGTCGACGCAAGTGGCGGGGACGATGGGGTACATGCCACCGGAGTA 819
||||||| | ||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 715 GTCGAGGACTCATGTGTCGACGCAAATGGCAGGGACGATGGGGTACATGCCCCCGGAGTA 774
Query 820 TTGGGAAGGGAATACCGCGGCGACGGTTAAAGCTGATGTTTATAGTTTTGGTGTATTGAT 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 TTGGGAAGGGAATACCGCGGCGACGGTTAAAGCTGATGTTTATAGTTTTGGTGTTTTGAT 834
Query 880 GTTGGAATTGGCGACGCGGAGACGGCCGAATTTAACGGTTGTTGTGGATGAGAAGGAAGT 939
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||
Sbjct 835 GTTGGAATTGGCGACGCGGAAACGGCCGAATTTAACGGTTTTTGTGGATGAGACGGAGGT 894
Query 940 TGGGTTGGCTCAATGGGCTGTGATCATGGTGGAGCAAAATCGGTGTTATGAAATGTTGGA 999
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||
Sbjct 895 TGGGTTGGCTCAATGGGCTGTGATCATGATGGAGCAAAATCGGTATTATGAAATGTTAGA 954
Query 1000 TTTTGGAGGTGTTTGTGGTAGTGAGAAGGGAGTGGAAGAGTATTTTAGGATTGCTTGTCT 1059
||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 955 TTTCGGAGGTGTTGGTGGTAGTGAGAAAGGTGTGGAAGAGTATTTTAGGATTGCTTGTCT 1014
Query 1060 TTGTATTAAAGAGTCGACTAGAGAAAGGCCTACTATGGTTCAAGTGGTGGAGTTATTGGA 1119
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1015 TTGTATTAAAGAGTCGACTAGAGAAAGGCCTACTATGAATCAAGTGGTGGAGTTGTTGGA 1074
Query 1120 GGAGTTATGTCGATTTATGTAGTCATATTAATCCAATAGGTAAATG 1165
|| ||||||||| |||||||||| | | | |||| |||||| |||
Sbjct 1075 AGAATTATGTCGACTTATGTAGTC-T-T-ACTCCA-TAGGTAGATG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5