BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42450.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494789 jgi|Araly1|494789|fgenesh2_kg.8__605__AT5G42450.1 1768 0.0
> Ahg494789 jgi|Araly1|494789|fgenesh2_kg.8__605__AT5G42450.1
Length=1250
Score = 1768 bits (957), Expect = 0.0
Identities = 1131/1217 (93%), Gaps = 4/1217 (0%)
Strand=Plus/Plus
Query 347 ATTGTTATGCGTTAAAGATGGGACTTGCGTCGAATGTGTTTGTTGGTAGTGCGGTTTTGA 406
||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 ATTGTTATGCGTTAAAGATTGGACTTGCATCGAATGTGTTTGTGGGTAGTGCGGTTTTGA 60
Query 407 ACTGTTATGTGAAACTGAGTACGTTGACAGATGCTCGTAGATGTTTTGATGACACTAGAG 466
||||||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||
Sbjct 61 ACTGTTATGTGAAGCTGAGTGCGTTAACAGATGCTCGTAGAAGTTTCGATGACACTAGAG 120
Query 467 ACCCAAACGTAGTTTCTATTACCAATTTGATTAGTGGGTACCTTAAGAAACATGAATTTG 526
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCCAAACATAGTTTCTATTACCAATTTGATTAGTGGGTACCTTAAGAAACATGAATTTG 180
Query 527 AAGAAGCTCTTTCGTTGTTTAGAGCAATGCCTGAGAGAAGTGTTGTTACTTGGAATGCAG 586
| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 181 AGGAAGCCCTTTCGTTGTTTAGAACAATGCCGGAGCGAAGTGTTGTTACTTGGAATGCAG 240
Query 587 TTATTGGAGGGTTTAGCCAGACGGGGCGGAACGAAGAGGCTGTGAATACTTTTGTGGATA 646
| ||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 241 TGATTGGAGGGTTTAGCCAAACGGGGCAGAACGAAGAAGCTGTGAATACGTTTGTGGATA 300
Query 647 TGTTAAGGGAAGGTGTGGTGATACCTAACGAATCAACCTTCCCTTGTGCTATAACAGCCA 706
|||||||||||||| ||||| | |||||||| ||||||||||||| | ||||||||||||
Sbjct 301 TGTTAAGGGAAGGTTTGGTGCTGCCTAACGAGTCAACCTTCCCTTCTACTATAACAGCCA 360
Query 707 TATCTAATATAGCTTCTCATGGTGCTGGTAAGAGTATTCACGCCTGCGCTATAAAGTTCT 766
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 361 TATCTAATATAGCTTCTCATGGTGCTGGTAAAAGTATTCACGCTTGCGCAATAAAGTTCT 420
Query 767 TGGGGAAGCGATTCAATGTCTTTGTTTGGAACTCTCTGATCAGTTTTTACTCAAAATGTG 826
||| ||||||||||||||| |||||| |||| ||||| || || ||||||||||||||||
Sbjct 421 TGGAGAAGCGATTCAATGTTTTTGTTGGGAATTCTCTTATTAGCTTTTACTCAAAATGTG 480
Query 827 GGAACATGGAAGATAGTCTTCTGGCTTTCAACAAGCTCGAAGAAGAACAACGGAACATTG 886
| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 481 GTAACATGGAAGATAGTCTTCTGGCTTTTAACAAGCTCCAAGAAGAACAACGGAACATTG 540
Query 887 TATCTTGGAACTCTATGATATGGGGTTATGCGCACAACGGAAGAGGAGAAGAAGCTGTAG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCTTGGAACTCTATGATATGGGGTTATGCGCACAACGGAAGAGGAGAAGAAGCTGTAG 600
Query 947 CCATGTTTGAGAAAATGGTTAAAGACACAAACCTGAGACCAAACAACGTGACAATCCTTG 1006
| ||||||||||||||| | |||||||||||||||| ||||||||| |||||| | ||||
Sbjct 601 CTATGTTTGAGAAAATGATCAAAGACACAAACCTGAAACCAAACAATGTGACACTTCTTG 660
Query 1007 GAGTATTATTTGCGTGTAACCATGCGGGCCTAATACAAGAAGGGTACATGTATTTTAACA 1066
|| |||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||
Sbjct 661 GACTATTATTTGCGTGTAACCATGCAGGCCTGATACAAGAAGGATACACGTATTTTAACA 720
Query 1067 AAGCTGTGAATGATTATGATGATCCAAACCT-ACTAGAACTGGAGCACTATGCTTGTATG 1125
|||| |||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct 721 AAGCGGTGAATGATTATGATGATCCAAACCTGA-TACAACCAGAGCACTATGCTTGTATG 779
Query 1126 GTGGATATGCTTTCTAGGTCCGGCCGTTTCAAAGAAGCAGAAGAGCTTATTAAAAGTATG 1185
||||||||||| ||| |||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 780 GTGGATATGCTCTCTCGGTCAGGCCGTTTCAAAGAAGCTGAGGAGCTTATTAAAAGTATG 839
Query 1186 CCTCTTGACCCAGGAATCGGGTTTTGGAAGGCATTGCTTGGGGGATGCCAGATTCACTCA 1245
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCTCTTGACCCGGGAATCGGGTTTTGGAAGGCATTGCTTGGGGGATGCCAGATTCACTCA 899
Query 1246 AACAAGCGTCTGGCTAAATTAGCGGCGTCAAAAATCTTGGA-ATTGGATCCTAGAGATGT 1304
||||||||||||||||||||||||||||| || |||||||| || |||||| ||||||||
Sbjct 900 AACAAGCGTCTGGCTAAATTAGCGGCGTCTAAGATCTTGGAGAT-GGATCCCAGAGATGT 958
Query 1305 TTCATCATACGTAATGCTTTCAAATGCTTATTCTGCTATGGAAAACTGGCAGAATGTGTC 1364
|||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||
Sbjct 959 TTCATCATACGTTATGCTTTCAAATGCTTACTCTGCTTTGGAAAACTGGCAGGATGTGTC 1018
Query 1365 GCTGATACGGAGGAAAATGAAGGAGACTGGTTTAAAGCGTTTTACGGGATGTAGTTGGAT 1424
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1019 ACTAATACGGAGGAAAATGAAGGAGACGGGTTTAAAGCGTTTTACTGGATGTAGTTGGAT 1078
Query 1425 TGAAGTTAGAGACCAAATTCGTGTCTTTGTGAATGCTGACAAGAACAACGAACTTAAGGA 1484
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGAAGTTAAAGGCCAAGTTCGTGTCTTTGTGAATGCTGACAAGAACAACGAACTTAAGGA 1138
Query 1485 TGAAGTCTATAGGATGTTGGCACTTGTTTCTCAACATCTTGAAGAAAATGAATGTTGGAA 1544
|||||||||||||||||||||| || || ||||||||||||| ||| ||||||||||| |
Sbjct 1139 TGAAGTCTATAGGATGTTGGCATTTATTACTCAACATCTTGAGGAAGATGAATGTTGGGA 1198
Query 1545 AGACTTGTGAATACAAC 1561
|||||| ||||| ||||
Sbjct 1199 AGACTTATGAATGCAAC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5