BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42470.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949022 jgi|Araly1|949022|scaffold_800909.1 1676 0.0
> Ahg949022 jgi|Araly1|949022|scaffold_800909.1
Length=1190
Score = 1676 bits (907), Expect = 0.0
Identities = 1094/1184 (92%), Gaps = 13/1184 (1%)
Strand=Plus/Plus
Query 51 GATCCTTCCCATGGCGTTCGAAGAATTCCCACCTCTAATCGC-CGACCAGCTCCACTACT 109
||||| ||| ||||||||||||| | |||||||||||||||| | |||||||||||||||
Sbjct 14 GATCC-TCCTATGGCGTTCGAAGGACTCCCACCTCTAATCGCTC-ACCAGCTCCACTACT 71
Query 110 TACTCAATCACTCACCTGATTCCATCAAGATCGCAAACGTGTGGTCTGGTAACAAAATTA 169
||||||| ||||| ||||||||||||||||||| ||| || |||||||||||||| ||||
Sbjct 72 TACTCAACCACTCGCCTGATTCCATCAAGATCGAAAATGTCTGGTCTGGTAACAAGATTA 131
Query 170 ATCCCAAGATTCTCGATCGCTTTACTCTCGTGATACCTTACTGTCTAGAGACAATCAAAT 229
|||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||
Sbjct 132 ATCCCAAGATTCTCGATCGCTTTACTTTGGTGATACCTTATTGTCTAGAGACTATCAAAT 191
Query 230 GGGATGTTATTTACAATTCAGAGTATGCAATGGATCCTCCAGATTTCGTATTTGGACCAG 289
|||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||
Sbjct 192 GGGATGTTATTTACAATTCAGAGTATCCAGTGGATCCTCCTGATTTCGTATTCGGACCAG 251
Query 290 ACGACGAAGATTTTGTGCCGTGTAAGTGTAGCGCTATTGCTCCTGATGATGATCAGATAT 349
|||||||||||||| |||||||| | || ||||||||||||||||||||||||||||
Sbjct 252 ACGACGAAGATTTTATGCCGTGT-A--GT---GCTATTGCTCCTGATGATGATCAGATAT 305
Query 350 CATCACTGGAGAAGGCTTTGTCTGAGTGGGATCACGAGGACTCCACTCGGTTACTTGTTA 409
||||| || ||||||||||||| ||||||||| |||||||||| || |||||||||||||
Sbjct 306 CATCATTGAAGAAGGCTTTGTCCGAGTGGGATAACGAGGACTCGACGCGGTTACTTGTTA 365
Query 410 TCATTCAAGGATTGAGGGATCAATATGTGGCCTACCAAAGAAGGCGTGTGGGTCAAGTTG 469
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 366 TCATTCAAGGATTGAGGGATCAATATGTGGCATACCAAAGAAGGCGTGTGGGCCAAGTTG 425
Query 470 ATGATGATCGAGTTAAGTTTGAGATTAGCACCGTCTTAACTCGCAAGGGAATTGAAATGC 529
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 426 ATGATGATCGCGTGAAGTTTGAGATTAGCACCGTTTTAACTCGCAAGGGAATTGAAATGC 485
Query 530 AAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AAATGGCTTCAGGAGTTGACAAGCCAGAGGAAGTCAAGTTTGCAGTACCTCTTGTGATGG 545
Query 590 ATATGAACATAAACAAAATGGTGGTTGGCTGCCCTTGGAAGCATCAGCAGAAGATTTATC 649
|||||||||||||||||||||| | || || ||||||||||||||||||||||||||||
Sbjct 546 ATATGAACATAAACAAAATGGTAGCGGGGTGTCCTTGGAAGCATCAGCAGAAGATTTATC 605
Query 650 TTCAGGTAGTATACCCGATTCTTCGGAAATATGAAGCAGCACCGTC-AGCACCTCGTTTG 708
||||||||||||||||||||||||| ||||||||| | ||||| || | |||||||||||
Sbjct 606 TTCAGGTAGTATACCCGATTCTTCGAAAATATGAATCTGCACCTTCGA-CACCTCGTTTG 664
Query 709 AAATTAGTATCATATTATGATTTAAAATCGCTATTCTCTGTTGAGGATGTTAAACTTTCT 768
| ||||||||||| || |||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 665 AGATTAGTATCATCTTCTGATTTAAAAGCTCTATTCTCTGTTGAGGATGTTAAACTTCCT 724
Query 769 CCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCCCATCTTGAAGAAACACTTGAG 828
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 725 CCATGGATGGACGGGATGTGCTTGGCTGAATATCTTCCTCATCTCGAAGAAACTCTTGAG 784
Query 829 AGACAGATCCATGAAGCTGTTGCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCATTA 888
||||| || | ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 785 AGACAAATTGAGGAAGCTGTTTCTGCAATTGATTTAAGGAGGAGTTTTATTGAGGCTTTG 844
Query 889 AGTCTTAATCTGGGAAGACCTCTTGAAGCCGATCCTACCTTTTGCCGTAAGGCTACATTC 948
| |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 845 ACTCTTTTTCTTGGAAGACCTCTTGAAGCTGATCCTACCTTTTGCCGTAAGGCTACATTC 904
Query 949 CTTAATGCCTCTGGACAATTTACTTTCATGGTTCATTTCTTCTTTTCAACTCAATTTCCG 1008
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 905 CTTACTGCCTCTGGACAATTTACTTTCACGGTTCATTTCTTCTTTTCAACTCAATTTCCG 964
Query 1009 AAGCAGCAACCAACTCTGATGCTGCAAAGTTGTCAGCATTTAAACCAATCGAGTGTGCCA 1068
|||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||
Sbjct 965 AAGCAGCAACCAACCCTAATGCTTCAGAGTTGTCAGCATTTAAACCAATCGAGCGTGCCG 1024
Query 1069 GTGAAATCGAATCTCCTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGACGCATG 1128
|| ||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1025 GTAAAATCAAACCTCTTCACTGAGTACCCATGGAGTCCAAGATGGGAAGTGGGGCGCATG 1084
Query 1129 GCTGAGCGACTGTGTGACTTCCTGACCGACGAGGCTGTCAACTTTAAAAAATATTGTAAC 1188
|||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1085 GCTGAGAGACTGTGTGACTTCCTGACCGACGAGACTGTCAACTTCAAAAAATATTGTAAC 1144
Query 1189 GAAGCTCTGCTCCAACATTAGTGTATCTAT-TTCGAAAGTTAGT 1231
|||||||| ||||||||||||||||||||| || |||||||||
Sbjct 1145 GAAGCTCTACTCCAACATTAGTGTATCTATATTT-AAAGTTAGT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5