BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42490.1
Length=3264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494786 jgi|Araly1|494786|fgenesh2_kg.8__602__AT5G42490.1 4761 0.0
> Ahg494786 jgi|Araly1|494786|fgenesh2_kg.8__602__AT5G42490.1
Length=3267
Score = 4761 bits (2578), Expect = 0.0
Identities = 3073/3302 (93%), Gaps = 73/3302 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGTGGCGGAAAGGGGGAGAAGATATTGGTTTCGGTAAGGGTAAGGCCGCAGAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTGGCGGAAAGGGGGAGAAGATATTGGTTTCGGTAAGGGTAAGGCCGCAGAAC 60
Query 61 GAGAAAGAGAAGGCGAGGAATGATATATGTGATTGGGAATGTGTAAACAACACAACAATA 120
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 GAGAAGGAGAAGGCGAGGAATGATATATGCGATTGGGAATGTGTTAACAACACAACAATA 120
Query 121 GTATGCAATAACAATTTGCCTGAGAGGTCTCTCTTCCCCTCTACCTATACATTTGACAAA 180
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 ATCTGCAATAATAATTTGCCTGAGAGGTCTCTCTTCCCCTCGACCTATACATTTGATAAA 180
Query 181 GTGTTTGGATTTGATTCTCCCACGAAACAAGTCTATGAAGATGGAGCGAAGGAGGTTGCT 240
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GTGTTTGGATTCGATTCCCCCACGAAACAAGTCTATGAAGATGGAGCTAAGGAGGTTGCT 240
Query 241 CTTTGTGTTCTCGGCGGAATCAACTCAAGTATTTTCGCATATGGACAGACAAGCAGTGGG 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 CTTTGTGTTCTCGGCGGAATCAATTCAAGCATTTTCGCATATGGACAGACAAGCAGTGGG 300
Query 301 AAGACGTATACAATGTGTGGCATCACTAAATTTGCAATGGATGACATTTTTTGTTACATT 360
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAGACATACACAATGTGTGGCATCACTAAATTTGCAATGGACGACATTTTTTGTTACATT 360
Query 361 CAAAAGCATACGGACCGCAAATTTACCCTCAAATTCTCTGCGATTGAGATCTACAATGAA 420
||||||||||| || |||||||| || || ||||||||||| |||||||| |||||||||
Sbjct 361 CAAAAGCATACAGATCGCAAATTCACTCTGAAATTCTCTGCAATTGAGATTTACAATGAA 420
Query 421 GCTGTGAGGGATCTCCTAAGTGGGGATAATAATCAACGGAGGCTCCTCGATGATCCAGAG 480
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 421 GCTGTGAGGGATCTCCTAAGTGGGGATAATAATCAACTGAGGCTTCTCGATGATCCAGAG 480
Query 481 AGAGGAACCGTCGTTGAGAAACTTATTGAGGAGACCATCCAAGACAGAACACATCTAGAG 540
||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 481 AGAGGGACCGTCGTTGAGAAACTTATTGAGGAGACCATCCGAGACAGATCACATCTGGAG 540
Query 541 GAACTTCTTACAGTCTGTGAAACTCAGAGGAAGATTGGAGAGACCTCCCTGAATGAAGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAACTTCTTACAGTCTGTGAAACTCAGAGGAAGATTGGAGAGACCTCCCTGAATGAAGTT 600
Query 601 AGCTCTAGATCACATCAAATACTCCGGCTGACAATCGAAAGCACTGGTCGAGAATATTCT 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 AGCTCTAGATCACATCAAATACTCCGGCTGACAATTGAAAGCACTGGTCGAGAATATTCT 660
Query 661 CCGGATAGCTCAAGCACTCTTGCAGCGTCCGTGTGCTTCATTGATCTGGCTGGAAGTGAA 720
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCTGATAGCTCAAGCACTCTTTCAGCGTCCGTGTGCTTCATTGATCTGGCTGGAAGTGAA 720
Query 721 CGTGCTTCTCAGACTTTATCTGCTGGTACAAGATTGAAAGAAGGTTGTCATATAAACAGG 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGAGCTTCTCAGACTTTATCTGCTGGTACAAGATTGAAAGAAGGTTGTCATATAAACAGG 780
Query 781 AGTTTACTTACTCTTGGAACGGTCATCCGCAAACTAAGGTTCGATCCATGTGATATAGCT 840
|||||||||||||||||||| ||||||||||||| | | | || | | ||||
Sbjct 781 AGTTTACTTACTCTTGGAACAGTCATCCGCAAAC------T--A---A-GT-A-A-AGCT 825
Query 841 CAATCTCAGGTGGAGAATTTACTTAAATCAACAGCAGAAGAGCGGTCTTCTAGGATGGAT 900
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CAATCCCAGGTGGAGAATTTACTTAAATCAACAGCAGAAGAGCGGTCTTCTAGGATGGAC 885
Query 901 GAACAATCCATGTTTAGCTCCATGGATTTTGATGCTGATTTCCGAAGAAGAAGCTATGAT 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 886 GAACAATCCATGTTTAGCTCCATGGATTTTGATGCCGATTTCCGAAGAAGAAGCTATGAT 945
Query 961 TCAACAGATCTTGGAGAACCTAGTATCATCAATAACTTAACCGAGAGGAACTTTGAGTTT 1020
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 946 TCAACAGATCTTGGAGAACCTAGTATCATCAATAATTTAACCGAGAGGAACTTTGAGTTT 1005
Query 1021 TTGGAAAATTCTGAAGAAGATGATTTCCTGCTAGATGATAAGACCCCTCAATTTTCGAGG 1080
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1006 TTGGAAAATTCTGAAGAAGATGATTTCCTGCTAGATGATAAAACCCCCCAATTTTCGAGG 1065
Query 1081 CATAACCTGTATGATGACTGGGAAGAGTTGGTTCAAATAACCGACGAAAGACTGGAAGAT 1140
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1066 CATAACCTGTATGATGGCTGGGAGGAGTTGGTTCAAATAACCGACGAAAGACTTGAAGAT 1125
Query 1141 GCATGCAAAGAAGTTAGATGCATTGAACCTGAAGCTGAGCAGAGTAGTGGACAACCAGCA 1200
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1126 GCATGCAAAGAAGTTAGATGCATTGAACCTGAAGCTGAGCAGAGTATTAGACAACCAGCA 1185
Query 1201 GCATG-CGAAAGCCATGACTCATTAGACGACATTGTTGATAAGATAGCTATCTCTGAGGT 1259
|| | |||| |||||||| |||||| |||||||||||||| |||||||||||||||
Sbjct 1186 ACA-GTTGAAATCCATGACTTATTAGAATTCATTGTTGATAAGAGAGCTATCTCTGAGGT 1244
Query 1260 TCTCTCACCTAGAAAGGAAGAAACTTTACCAGGTCTGGAACACGAACAAAGCTATAACCC 1319
||||||||||||||||||||||| |||| || ||| ||| ||||||||||||||||| |
Sbjct 1245 TCTCTCACCTAGAAAGGAAGAAAGTTTATTAGCTCTAGAATACGAACAAAGCTATAACTC 1304
Query 1320 TTCTACAG--GT-A------T-----T---GAGAAAGCCGAGAAT---GAAGACATGGAG 1359
|||||||| | | | | ||||||||||||||| ||||||||||||
Sbjct 1305 TTCTACAGCTATAACTCTTCTACAGGTGAAGAGAAAGCCGAGAATGAAGAAGACATGGAG 1364
Query 1360 ATTAGCATACCTGCAGCAAAGGAAGAAACTTTACCAGCTCTAGAATACGAACAAAGCTAT 1419
||||| | |||| ||| ||| ||||||| |||| |||||| ||| ||||||||||||||
Sbjct 1365 ATTAGAACACCTTCAG-AAA-GAAGAAATTTTATCAGCTCCGGAACACGAACAAAGCTAT 1422
Query 1420 AACTCTTATACAGGTAATGAGAGAGCCGAGAATGAAGTCATGGAG---ATTAGCACACCT 1476
||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||| |
Sbjct 1423 AACTCTTCTACAGGTGATGAGAAAGCCGAGAATGAAGTCATGGAGATTATTAGCACACGT 1482
Query 1477 AGAAAGGACGAACCATTATCAGCTCTGGAATACGAACAAAGCTATAACTCTTCTACAAGT 1536
|||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||| | ||
Sbjct 1483 AGAAAGGAAGAACCCTTATCAGCTCTGGAATACGAACAGAGCTTTAACTCTTCTATAGGT 1542
Query 1537 AATGAGAAAGCCGAGAATGAAGATATGGAGATTAGCACACCTGCAGAAAAGGAAAATGTT 1596
||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||
Sbjct 1543 AATGAGAAAGCCGAGAATGAAGACATAGAGATTAGCACACCTACAGAAACGGAAAATGTT 1602
Query 1597 GACTTATCTTT--AAA-AACA-A--TAGA----TGT--GAATGCTAAGCCTGAGACCTAT 1644
|||||||||| ||| || | | |||| ||| |||||||||||||||||| |||
Sbjct 1603 AACTTATCTTTGAAAACAATAGATGTAGAGTTGTGTGGGAATGCTAAGCCTGAGACATAT 1662
Query 1645 GAGCTAACTCTAAAGAACTCGGATTTGGAGATAGG-CCCATCAGTTGAAGCTCAAGAATC 1703
||||||||| | ||||| |||||||||||||| || |||||||||||||||| |||||||
Sbjct 1663 GAGCTAACTTTTAAGAATTCGGATTTGGAGAT-GGACCCATCAGTTGAAGCTGAAGAATC 1721
Query 1704 ACAGGAATCTGTGAATGAAGAGGAACAAATGAAGAATGAAGAGAGGAAAATGAGTCCTTC 1763
||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 1722 ACAGGAATCTGTGAAAGAAGACGAAGAAATGAAGAATGAAGAAAGGAAAATGAGTCCTTC 1781
Query 1764 CACAAAGCAAGCTGAGCAATGCTTAAATAAAGAAGAAAATGCTCAGTCAGAACAGCAATC 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 CACAAAGCAAGCTGAGCAATGCTTAAATAAAGAAGAAAATGCTCAGTCAGAACAGCAATC 1841
Query 1824 AACGGAAGACTGTGAATTGAATTCACTCCCTATTAATAACCAATCAGAAGCAACAGTCGA 1883
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1842 AACGGAAGACTGTGAATTGAATTCACTCCCTATTAATAACCAATCAGAAGCCACAGTCGA 1901
Query 1884 AGTGGAGTTAACACCCAACGATGCTAAGTTAGATGAGGATGCGACATCTAGAGATAAGTG 1943
|||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1902 AGTGGAGTTAACACCCAATGATACTAAGTTAGATGAGGATGCGACATCTGGAGATAAGTG 1961
Query 1944 GGAGAGCAAACAGCAACAAGAGGCTGATAAAGATTGTAACGAATCATCTGTCTGCAAAAA 2003
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 GGAGAGAAAACAGCAACAAGAGGCTGATAAAGATTGTAACGAATCATCTGTCTGCAAAAA 2021
Query 2004 TATTGGGACAGATGATAATGACAACGACACTTACATGGCTTTGAAAGAAAAAGTTAAGGA 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 TATTGGGACAGATGATAATGACAACGACACTTACATGGCTTTGAAAGAAAAAGTTAAGGA 2081
Query 2064 GATGCAGAAGAAAATTGAATACCTTATGAGCATGCACACAGCAGAACAACAACAATCACC 2123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2082 GATGCAGAAGAAAATTGAATACCTTATGAGCATGCACACAGCAGAACAACAACAGTCACC 2141
Query 2124 CTCCTTCAGAAGAGATT-TCAAGAGTCCTCCAGAATATTTTACTGCCAAAAGAAGCCGAA 2182
||||||||||||||| | | | ||| || | ||||| ||||||| |||||||||||||||
Sbjct 2142 CTCCTTCAGAAGAGAATAT-ATGAG-CC-C-AGAATGTTTTACTACCAAAAGAAGCCGAA 2197
Query 2183 GTTGCAGAGAAAATCTCTTGAGTGTTAGATCTCCTCATTGGTTTGAGAGTTTGGAAGTTA 2242
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2198 GTTGCAGAGAGAATCTCTTGAGTGTTAGATCTCCTCATTGGTTTGAGAATTTGGAAGGCA 2257
Query 2243 GTAACAATACATCACCTACCTGGAGGGTTATGCAGACAAAAGCTTCTCCTGGAAGACCCA 2302
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2258 ATAACAATACATCACCTGCCTGGAGGGTTATGCAGACAAAAGCTTCACCTGGAAGACCCA 2317
Query 2303 ACACTTCGAGCATTTCCTTTGATTCAGGGAGTTCTACCTCCATTGATACGCGTAGCCTGA 2362
||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct 2318 ACACTTCAAGCATTTCCTTTGATTCGGGGAGTTCTACCTCTATCGATACACGTAGCCTGA 2377
Query 2363 AAGACTATGATCCTGAGATGGGCAATAGCTTCCGTGAATTTGTAGCAGGGCTTGAGGAAA 2422
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2378 AAGACTATGATCCTGAGATGGGTAATAGCTTCCGTGAATTTGTAGCAGGGCTTGAAGAAA 2437
Query 2423 TGGCAAAGAAGCATCACTCAATTGACTCGACACCGGAGCTAGATTATGGGATTCCATACG 2482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2438 TGGCAAAGAAGCATCACTCAATTGACTCGACACCGGAGCTAGATTATGGGATTCCATATG 2497
Query 2483 CTCCCACAAAAACCGAAAGAATGGAGATCAGACCGGAAAGCCCTGCAGATAGCGTTAGAG 2542
| ||||||| |||||||||| |||||||||||||||| ||||||||| ||||| ||||||
Sbjct 2498 CCCCCACAAGAACCGAAAGATTGGAGATCAGACCGGACAGCCCTGCAAATAGCATTAGAG 2557
Query 2543 GAAACGAGAATGCATTGCCAAATCCTCAGGATATAAATAAAGAAACCACAGATGCCACCA 2602
||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 2558 GAAACGAGAATGCATTGCCAAATCCTCAGGA-A-A----------CCACAGATGCCACCA 2605
Query 2603 ATAATCAGTCACAGAGAGAGCAGGTTGGTGATTCGGTAGAAGAAGCAAAACCTAAGGAAA 2662
||||||| ||| |||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 2606 ATAATCAATCAGAGAGAGAGCAGGCCGATGATTCGGTAGAAGAATCAAAACCTAAGGAAA 2665
Query 2663 CAGATTCCACAGAGGCTTCCCAGGAGAAACTACAGGTAGCTGCTAATGGACAATATTCAA 2722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 CAGATTCCACAGAGGCTTCCCAGGAGAAACTACAGGTAGCTGCTAATGGACAATATTCAA 2725
Query 2723 TCAGTTCTTCAGACTTTGAGAGACAGCAAAGGAAAATAATTGAGCTTTGGGCAGCATGCA 2782
|| |||||||||||||||||| ||||||||| ||||||| ||||||||||| | ||||
Sbjct 2726 GCATTTCTTCAGACTTTGAGAGGCAGCAAAGGCAAATAATAGAGCTTTGGGCGGTTTGCA 2785
Query 2783 ATGTACCACTGGTTCACAGAACCTACTTCTTTTTGCTCTTCAAAGGTGATCCTTCAGACT 2842
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2786 ATGTACCACTGGTTCATAGAACCTACTTCTTCTTGCTCTTCAAAGGTGATCCTTCCGACT 2845
Query 2843 ATGTTTATATGGAAGTTGAACTTCGAAGGCTATCTTTTCTGAAGCAGACGATATCTAATG 2902
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2846 ATGTTTATATGGAAGTCGAACTTAGAAGGCTATCTTTTCTGAAGCAGACGATATCTAATG 2905
Query 2903 ACATGGAAACATCAAGGATGCAAACAGTGAAGGCACTCACACGCGAGAAGGAATGGATTT 2962
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2906 ACATGGAAGCATCAAGGATACAAACAGTGAAGGCACTCACACGCGAGAAGGAATGGCTTT 2965
Query 2963 CCAAACAATTACCAAAGAAGTTTCCATGGAACCAAAGAATAGGGCTTTACCAAAAATGGG 3022
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2966 CCAAACAATTACCAAAGAAGTTTCCATGGAGCCAAAGAATAGAGCTTTACCAAAAATGGG 3025
Query 3023 GCGTGGAGGTGAACTCAAAGCAGAGAAGCCTGCAAGTGGCGCACAAGCTGTGGACCAACA 3082
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3026 GAGTGGAGGTGAACTCAAAGCAGAGAAGCCTGCAAGTGGCGCACAAGCTGTGGACCAACA 3085
Query 3083 CCCAAGATATGGACCACATAAAAGAAAGTGCTTCTCTTGTGGCTAAGCTGCTTGGATTTG 3142
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3086 CCCAAGATATGGAACACATAAAAGAAAGTGCTTCTCTTGTGGCTAAGCTGCTTGGATTTG 3145
Query 3143 TTGAGCCAAGTCGAATGCCGAAGGAAATGTTTGGCCTCAGCTTGTTACCTAGAACCGAAA 3202
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 3146 TTGAGCCAAGTCGGATGCCAAAGGAAATGTTTGGCCTCAGCTTGTTACCTAGAACTGAGA 3205
Query 3203 ACGTAAAATCATCTGGCTGGAGATTTACCAAATCATTCTCTGCTATACGCTTGACCAGAT 3262
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3206 ACGTAAAATCATCTGGCTGGAGATTTACCAAATCATTCTCTGGTATACGCTTGACCAGAT 3265
Query 3263 GA 3264
||
Sbjct 3266 GA 3267
Score = 156 bits (84), Expect = 1e-36
Identities = 177/217 (82%), Gaps = 25/217 (12%)
Strand=Plus/Plus
Query 1377 AAAGGAAGAAACTTTACCAGCTCTAGAATACGAACAAAGCTATAACTCTTATACAGGTA- 1435
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1257 AAAGGAAGAAAGTTTATTAGCTCTAGAATACGAACAAAGCTATAACTCTTCTACAGCTAT 1316
Query 1436 A--T--------G---A-GAGA--GCCGAGAATGAAGT---CATGGAGATTAGCACACCT 1476
| | | | |||| ||||||||||||| |||||||||||| ||||||
Sbjct 1317 AACTCTTCTACAGGTGAAGAGAAAGCCGAGAATGAAGAAGACATGGAGATTAGAACACCT 1376
Query 1477 --AGAAAGGACGAACCATTATCAGCTCTGGAATACGAACAAAGCTATAACTCTTCTACAA 1534
|||||| | ||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1377 TCAGAAAGAA-GAAATTTTATCAGCTCCGGAACACGAACAAAGCTATAACTCTTCTACAG 1435
Query 1535 GTAATGAGAAAGCCGAGAATGAAGAT-ATGGAGATTA 1570
|| ||||||||||||||||||||| | ||||||||||
Sbjct 1436 GTGATGAGAAAGCCGAGAATGAAG-TCATGGAGATTA 1471
Score = 82.4 bits (44), Expect = 2e-14
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1472 CACCTAGAAAGGACGAACCATTATCAGCTCTGGAATACGAACAAAGCTATAACTCTTCTA 1531
||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1250 CACCTAGAAAGGAAGAAAGTTTATTAGCTCTAGAATACGAACAAAGCTATAACTCTTCTA 1309
Query 1532 CA 1533
||
Sbjct 1310 CA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123192363801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5