BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42500.1
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494784 jgi|Araly1|494784|fgenesh2_kg.8__600__AT5G42500.1 822 0.0
Ahg949017 jgi|Araly1|949017|scaffold_800904.1 817 0.0
Ahg912146 jgi|Araly1|912146|Al_scaffold_0001_2400 239 2e-62
> Ahg494784 jgi|Araly1|494784|fgenesh2_kg.8__600__AT5G42500.1
Length=620
Score = 822 bits (445), Expect = 0.0
Identities = 549/598 (92%), Gaps = 11/598 (2%)
Strand=Plus/Plus
Query 10 CTAACATGGCTAAACGTTTTCTCCTTCTTCTTCCTCTTTTGTCAACTATTCTACTTCTTT 69
|||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 1 CTAACATGGCTAAACGTTTTCTGATTCTTCTTCCTCTCTTCTCAACTATTCTTCTTCTTG 60
Query 70 CCGTATCCGTTACAGAATCCGAAGCTTACTCCACAACAAAGCCGTGTCAAGGCTACAAGC 129
||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 61 CCGTAACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAGC 120
Query 130 CGGA-TAAATTCACCCACCTCCACTTTTACTTCCATGACGTCATCTCCGGTGACAAACCT 188
|||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CGGAGT-GCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACCT 179
Query 189 ACCGCCGTCAAAGTTGCGGAAGCCCGCCGAACAAACT-CCTCCAACGTCAATTTTGGCGT 247
|||||| ||||||| || |||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 180 ACCGCCATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCT-CAACGTCAATTTTGGCGT 238
Query 248 GATTATGATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGGG 307
||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||||
Sbjct 239 GATTATGATCGCTGATGATCCGTTGACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGGG 298
Query 308 AAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAACATAAG-CTTCACAATGGTCT 366
||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||||||| |
Sbjct 299 AAGAGCTCAGGGGATGTACGCATCGACGGCCATGAAGGACAT-AGTCTTCACAATGGTAT 357
Query 367 TTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTCGCGATGTATGGACGGA 426
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 358 TTAACTTGGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGGA 417
Query 427 ATGAGATATTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGTGCTTTCAGGT 486
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 ATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGGT 477
Query 487 TTGCTAGAGGCTATGCACAGGCCAAGACTTATAAGGTTGTTGGTCTAGATGCCGTGGTCG 546
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCG 537
Query 547 AGTATAATGTCTTCATTTGGCATTAATCATTT-GCATATT-GTC-T--AATGTCTTTC 599
||||||||||||||||||||||||||| |||| ||||||| || | ||||||||||
Sbjct 538 AGTATAATGTCTTCATTTGGCATTAATTATTTCGCATATTTGTTGTTTAATGTCTTTC 595
> Ahg949017 jgi|Araly1|949017|scaffold_800904.1
Length=598
Score = 817 bits (442), Expect = 0.0
Identities = 536/581 (92%), Gaps = 7/581 (1%)
Strand=Plus/Plus
Query 9 ACTAACATGGCTAAACGTTTTCTCCTTCTTCTTCCTCTTTTGTCAACTATTCTACTTCTT 68
||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 15 ACTAACATGGCTAAACGTTTTCTGATTCTTCTTCCTCTCTTCTCAACTATTCTTCTTCTT 74
Query 69 TCCGTATCCGTTACAGAATCCGAAGCTTACTCCACAACAAAGCCGTGTCAAGGCTACAAG 128
||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 75 GCCGTAACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAG 134
Query 129 CCGGA-TAAATTCACCCACCTCCACTTTTACTTCCATGACGTCATCTCCGGTGACAAACC 187
||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 135 CCGGAGT-GCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACC 193
Query 188 TACCGCCGTCAAAGTTGCGGAAGCCCGCCGAACAAACT-CCTCCAACGTCAATTTTGGCG 246
||||||| ||||||| || |||||||||| |||||||| ||| |||||||||||||||||
Sbjct 194 TACCGCCATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCT-CAACGTCAATTTTGGCG 252
Query 247 TGATTATGATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGG 306
||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |||||
Sbjct 253 TGATTATGATCGCTGATGATCCGTTAACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGG 312
Query 307 GAAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAACATAAG-CTTCACAATGGTC 365
|||||||||| ||||||||||||| ||| ||||||||| |||| || ||||||||||||
Sbjct 313 GAAGAGCTCAGGGGATGTACGCATCGACGGCCATGAAGGACAT-AGTCTTCACAATGGTA 371
Query 366 TTTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTCGCGATGTATGGACGG 425
|||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 372 TTTAACTTGGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGG 431
Query 426 AATGAGATATTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGTGCTTTCAGG 485
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 432 AATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGG 491
Query 486 TTTGCTAGAGGCTATGCACAGGCCAAGACTTATAAGGTTGTTGGTCTAGATGCCGTGGTC 545
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 492 TTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTC 551
Query 546 GAGTATAATGTCTTCATTTGGCATTAATCATTT-GCATATT 585
|||||||||||||||||||||||||||| |||| |||||||
Sbjct 552 GAGTATAATGTCTTCATTTGGCATTAATTATTTCGCATATT 592
> Ahg912146 jgi|Araly1|912146|Al_scaffold_0001_2400
Length=483
Score = 239 bits (129), Expect = 2e-62
Identities = 236/286 (83%), Gaps = 14/286 (5%)
Strand=Plus/Plus
Query 303 GTGGGAAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAAC-ATAAG---CTTCAC 358
||||| |||||||| ||| | ||||||| ||| | |||||| ||| | | |||| |
Sbjct 169 GTGGGGAGAGCTCAGGGGTTATACGCATCGACGGACATGAA-AACGTTTGGCTTCTTCTC 227
Query 359 AATGGTCTTTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTC-GCGATGT 417
|||||||||||||||||| || |||| ||||||||||| || ||||||| | |||||||
Sbjct 228 AATGGTCTTTAACTTGGCGTTCACGGAAGGAGAGTTTAACGGCAGCACCG-CTGCGATGT 286
Query 418 ATGGACGGAATGAGATATTTTC-GAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGT 476
||||||| ||| |||| | | | ||| ||||||| |||| || || ||||| |||||
Sbjct 287 ATGGACGTAATCCGATA-CTGCTGGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGC 345
Query 477 GCTTTCAGGTTTGCTAGAGGCTATGCACAGGCCAA-GACTTATAAGGTTGTTGGTCTAGA 535
|||||||||||||||||||||||||||| | |||| ||||||||| |||||| | ||||
Sbjct 346 GCTTTCAGGTTTGCTAGAGGCTATGCAC-GACCAAAGACTTATAAAGTTGTTAATATAGA 404
Query 536 TGCCGTGGTCGAGTATAATGTCTTCATTTGGCATTAATCA-TTTGC 580
||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 405 TGCCGTGGTTGAGTATAATGTCTTCATTTGGCATT--TCACTTTGC 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25389862722
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5