BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42500.1 Length=691 Score E Sequences producing significant alignments: (Bits) Value Ahg494784 jgi|Araly1|494784|fgenesh2_kg.8__600__AT5G42500.1 822 0.0 Ahg949017 jgi|Araly1|949017|scaffold_800904.1 817 0.0 Ahg912146 jgi|Araly1|912146|Al_scaffold_0001_2400 239 2e-62 > Ahg494784 jgi|Araly1|494784|fgenesh2_kg.8__600__AT5G42500.1 Length=620 Score = 822 bits (445), Expect = 0.0 Identities = 549/598 (92%), Gaps = 11/598 (2%) Strand=Plus/Plus Query 10 CTAACATGGCTAAACGTTTTCTCCTTCTTCTTCCTCTTTTGTCAACTATTCTACTTCTTT 69 |||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||| Sbjct 1 CTAACATGGCTAAACGTTTTCTGATTCTTCTTCCTCTCTTCTCAACTATTCTTCTTCTTG 60 Query 70 CCGTATCCGTTACAGAATCCGAAGCTTACTCCACAACAAAGCCGTGTCAAGGCTACAAGC 129 ||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| Sbjct 61 CCGTAACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAGC 120 Query 130 CGGA-TAAATTCACCCACCTCCACTTTTACTTCCATGACGTCATCTCCGGTGACAAACCT 188 |||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 121 CGGAGT-GCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACCT 179 Query 189 ACCGCCGTCAAAGTTGCGGAAGCCCGCCGAACAAACT-CCTCCAACGTCAATTTTGGCGT 247 |||||| ||||||| || |||||||||| |||||||| ||| |||||||||||||||||| Sbjct 180 ACCGCCATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCT-CAACGTCAATTTTGGCGT 238 Query 248 GATTATGATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGGG 307 ||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||| Sbjct 239 GATTATGATCGCTGATGATCCGTTGACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGGG 298 Query 308 AAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAACATAAG-CTTCACAATGGTCT 366 ||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||||||| | Sbjct 299 AAGAGCTCAGGGGATGTACGCATCGACGGCCATGAAGGACAT-AGTCTTCACAATGGTAT 357 Query 367 TTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTCGCGATGTATGGACGGA 426 ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||| Sbjct 358 TTAACTTGGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGGA 417 Query 427 ATGAGATATTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGTGCTTTCAGGT 486 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 418 ATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGGT 477 Query 487 TTGCTAGAGGCTATGCACAGGCCAAGACTTATAAGGTTGTTGGTCTAGATGCCGTGGTCG 546 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 478 TTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTCG 537 Query 547 AGTATAATGTCTTCATTTGGCATTAATCATTT-GCATATT-GTC-T--AATGTCTTTC 599 ||||||||||||||||||||||||||| |||| ||||||| || | |||||||||| Sbjct 538 AGTATAATGTCTTCATTTGGCATTAATTATTTCGCATATTTGTTGTTTAATGTCTTTC 595 > Ahg949017 jgi|Araly1|949017|scaffold_800904.1 Length=598 Score = 817 bits (442), Expect = 0.0 Identities = 536/581 (92%), Gaps = 7/581 (1%) Strand=Plus/Plus Query 9 ACTAACATGGCTAAACGTTTTCTCCTTCTTCTTCCTCTTTTGTCAACTATTCTACTTCTT 68 ||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||| Sbjct 15 ACTAACATGGCTAAACGTTTTCTGATTCTTCTTCCTCTCTTCTCAACTATTCTTCTTCTT 74 Query 69 TCCGTATCCGTTACAGAATCCGAAGCTTACTCCACAACAAAGCCGTGTCAAGGCTACAAG 128 ||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| Sbjct 75 GCCGTAACCGTTACAGAATCCGAAGCTTACTCGACAACAACGCCGTTTCAAGGCTACAAG 134 Query 129 CCGGA-TAAATTCACCCACCTCCACTTTTACTTCCATGACGTCATCTCCGGTGACAAACC 187 ||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 135 CCGGAGT-GCTTCACTCACCTCCACTTTTACTTCCATGACGTCATCACCGGTGACAAACC 193 Query 188 TACCGCCGTCAAAGTTGCGGAAGCCCGCCGAACAAACT-CCTCCAACGTCAATTTTGGCG 246 ||||||| ||||||| || |||||||||| |||||||| ||| ||||||||||||||||| Sbjct 194 TACCGCCATCAAAGTCGCCGAAGCCCGCCCAACAAACTCCCT-CAACGTCAATTTTGGCG 252 Query 247 TGATTATGATCGCTGATGATCCGTTGACCGAAGGACCAGACCCGAGCTCAAAGGAAGTGG 306 ||||||||||||||||||||||||| || |||||||| |||||||| ||||||| ||||| Sbjct 253 TGATTATGATCGCTGATGATCCGTTAACAGAAGGACCTGACCCGAGTTCAAAGGTAGTGG 312 Query 307 GAAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAACATAAG-CTTCACAATGGTC 365 |||||||||| ||||||||||||| ||| ||||||||| |||| || |||||||||||| Sbjct 313 GAAGAGCTCAGGGGATGTACGCATCGACGGCCATGAAGGACAT-AGTCTTCACAATGGTA 371 Query 366 TTTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTCGCGATGTATGGACGG 425 |||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 372 TTTAACTTGGCTTTCACGGAAGGAGAGTTTAATGGAAGCACCCTCGCGATGTATGGCCGG 431 Query 426 AATGAGATATTTTCGAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGTGCTTTCAGG 485 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 432 AATGATATATTTTCGAAGGTGAGAGAGATGCCGATTATTGGAGGAACCGGTGCTTTCAGG 491 Query 486 TTTGCTAGAGGCTATGCACAGGCCAAGACTTATAAGGTTGTTGGTCTAGATGCCGTGGTC 545 ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 492 TTTGCTAGAGGGTATGCACAGGCCAAGACTTATAAGATTGTTGGTCTAGATGCCGTGGTC 551 Query 546 GAGTATAATGTCTTCATTTGGCATTAATCATTT-GCATATT 585 |||||||||||||||||||||||||||| |||| ||||||| Sbjct 552 GAGTATAATGTCTTCATTTGGCATTAATTATTTCGCATATT 592 > Ahg912146 jgi|Araly1|912146|Al_scaffold_0001_2400 Length=483 Score = 239 bits (129), Expect = 2e-62 Identities = 236/286 (83%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 303 GTGGGAAGAGCTCAAGGGATGTACGCATTGACAGCCATGAAGAAC-ATAAG---CTTCAC 358 ||||| |||||||| ||| | ||||||| ||| | |||||| ||| | | |||| | Sbjct 169 GTGGGGAGAGCTCAGGGGTTATACGCATCGACGGACATGAA-AACGTTTGGCTTCTTCTC 227 Query 359 AATGGTCTTTAACTTGGCTTTTACGGCGGGAGAGTTTAATGGAAGCACCGTC-GCGATGT 417 |||||||||||||||||| || |||| ||||||||||| || ||||||| | ||||||| Sbjct 228 AATGGTCTTTAACTTGGCGTTCACGGAAGGAGAGTTTAACGGCAGCACCG-CTGCGATGT 286 Query 418 ATGGACGGAATGAGATATTTTC-GAAGGTGAGAGAGATGCCAATTATTGGAGGAACCGGT 476 ||||||| ||| |||| | | | ||| ||||||| |||| || || ||||| ||||| Sbjct 287 ATGGACGTAATCCGATA-CTGCTGGAGGAGAGAGAGTTGCCGATCATCGGAGGTACCGGC 345 Query 477 GCTTTCAGGTTTGCTAGAGGCTATGCACAGGCCAA-GACTTATAAGGTTGTTGGTCTAGA 535 |||||||||||||||||||||||||||| | |||| ||||||||| |||||| | |||| Sbjct 346 GCTTTCAGGTTTGCTAGAGGCTATGCAC-GACCAAAGACTTATAAAGTTGTTAATATAGA 404 Query 536 TGCCGTGGTCGAGTATAATGTCTTCATTTGGCATTAATCA-TTTGC 580 ||||||||| ||||||||||||||||||||||||| ||| ||||| Sbjct 405 TGCCGTGGTTGAGTATAATGTCTTCATTTGGCATT--TCACTTTGC 448 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25389862722 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5