BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42520.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331146 jgi|Araly1|331146|fgenesh1_pm.C_scaffold_8000489 1249 0.0
> Ahg331146 jgi|Araly1|331146|fgenesh1_pm.C_scaffold_8000489
Length=999
Score = 1249 bits (676), Expect = 0.0
Identities = 744/777 (96%), Gaps = 3/777 (0%)
Strand=Plus/Plus
Query 264 ATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGTTCAGGGCCAGTGG 323
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGATGATGGTGGGCATCGTGAGAATGGTCGGCATAAAGCAGCAGCTCAGGGCCAGTGG 60
Query 324 TTGATGCAGCATCAGCCGTCGATGAAACAAGTGATGTCGATAATAGCAGAGCGCGATGCA 383
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 61 TTGATGCAGCATCAGCCGTCGATGAAACAAGTTATGTCAATAATAGCAGAGCGGGATGCA 120
Query 384 GCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGAC 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCGATTCAGGAGAGAAATCTGGCGATATCAGAGAAAAAAGCAGCAGTAGCTGAAAGGGAC 180
Query 444 ATGGCGTTTCTTCAGAGGGACACCGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGA 503
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCGTTTCTTCAGAGGGACACAGCCATTGCTGAGCGCAACAATGCGATAATGGAGAGA 240
Query 504 GACAGTGCTCTTACAGCACTCCAATACCGTGAGAACTCTATGGTTACTGCTCCTGCTGCC 563
||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||
Sbjct 241 GACAGTGCTCTTACAGCTCTCCAATACCGTGAGAACTCCATGGTTACTGCTGCTTCTGCC 300
Query 564 AATATGTCAGCATGTCCACCAGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCAT 623
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATATGTCGGCATGTCCACCGGGATGTCAAATATCACGTGGTGTAAAACACTTGCACCAT 360
Query 624 CCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAAAATGCATAT 683
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 CCGCACATGCATCATCATCATCAACAACATCACATACCTCAGTTGACTGAGAATGCATAT 420
Query 684 GAAACCAGAGAGATGGAGCCAAATGATGGTCTCCCAACATCACCACCTGCCGGATCCACC 743
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 421 GAAACCAGAGAAATGGAGCCAAATGATGGTCTCCCGACATCACCACCTGCTGGATCCGCC 480
Query 744 TTGGAATCTGCCAAACCAAAACGTGGTAAAAGAGTGAA---CCCAAAGGCGACAACACAA 800
|||||||||||||||||||| || |||||||||||||| |||||||||||| ||||||
Sbjct 481 TTGGAATCTGCCAAACCAAAGCGCGGTAAAAGAGTGAAAGACCCAAAGGCGACTACACAA 540
Query 801 ACTGCTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTTAAGAAAGAGAGCGAGGAC 860
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 541 ACCACTGCTAATAAGAGAGGGCCAAAAAATCAGAGGAAGGTGAAGAAAGAGAGCGATGAC 600
Query 861 GACTTAAACAAGATAATGTTTGTAAAGACGACCCATGACTACACAGACGAAGATTCAAGT 920
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 601 GACTTAAACAAGATAATGTTTGTAAAGACAACACATGACTACACAGAAGAAGATTCAAGT 660
Query 921 AAGCATATCTTAATAGGATCAAAATCTGACTGGAAAAGTCAAGAAATGGTGGGGCTGAAC 980
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 661 AAGCATATCTTAATAGGATCGAAATCCGACTGGAAAAGTCAAGAAATGGTGGGGCTGAAC 720
Query 981 CAAGTGGTTTACGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTT 1037
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAAGTTGTTTATGACGAGACAACGATGCCACCACCTGTATGTTCATGTACAGGAGTT 777
Score = 388 bits (210), Expect = 5e-107
Identities = 222/228 (97%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1065 GGAGGTTGGCAATCATCGTGTTGCACAACTACACTATCAATGTATCCTTTACCTGCACTG 1124
|||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 772 GGAGTTTGGCAATCATCGTGTTGCACAACCACACTATCAATGTACCCTTTACCGGCACTG 831
Query 1125 CCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAG 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCCAACAAAAGGCATGCTCGAGTTGGTGGACGGAAAATGAGCGGAAGCGCGTTCAACAAG 891
Query 1185 CTTCTAAGCCGGCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAG 1244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTTCTAAGCCGTCTTGCTGCAGAAGGGCATCATGATCTTTCAAACCCGGTCGATCTGAAG 951
Query 1245 GACCATTGGGCAAAGCACGGTACAAACCGCTACATTACGATTAAATGA 1292
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 952 GACCATTGGGCAAAGCACGGTACAAACCGCTACATCACGATTAAATGA 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5