BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42530.1

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331145 jgi|Araly1|331145|fgenesh1_pm.C_scaffold_8000488           185    2e-46


> Ahg331145 jgi|Araly1|331145|fgenesh1_pm.C_scaffold_8000488
Length=282

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 104/106 (98%), Gaps = 0/106 (0%)
 Strand=Plus/Plus

Query  56   ATGACAtcttctatggtctcttccatggctctctttctccttcttcttcttGTGTTTCCG  115
            ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    ATGACATCTTCAATGGTCTCTTCCATGGTTCTCTTTCTCCTTCTTCTTCTTGTGTTTCCG  60

Query  116  CATATGGATAAAGCCCTTGGCGCACAAGAGGAAGCCCAGAAACAAA  161
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CATATGGATAAAGCCCTTGGCGCACAAGAGGAAGCCCAGAAACAAA  106



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17437104173


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5