BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42540.2
Length=3458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949010 jgi|Araly1|949010|scaffold_800897.1 2290 0.0
> Ahg949010 jgi|Araly1|949010|scaffold_800897.1
Length=3203
Score = 2290 bits (1240), Expect = 0.0
Identities = 1416/1498 (95%), Gaps = 23/1498 (2%)
Strand=Plus/Plus
Query 105 TTCTTCACGATAATTTTCCGATGGGAGTTCCGTCGTTCTACAGATGGCTT-ATCCAGAGG 163
|||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 TTCTTCACGAAAATTCTCCGATGGGAGTTCCGTCGTTCTACAGATGG-TTAATCCAGAGG 59
Query 164 TATCCATTGACTATACAAGAAGTTATTGAAGAAGAGCCACTCGAAGTTAATGGCGGCGGC 223
|||||||||| ||||||| |||| ||||||||||| ||||||||||||||| ||||||
Sbjct 60 TATCCATTGATTATACAACAAGTCATTGAAGAAGAACCACTCGAAGTTAAT---GGCGGC 116
Query 224 GTCACGATTCCAATCGATTCAAGCAAACCTAATCCTAATGGTTACGAGTATGACAATCTT 283
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 117 GTCACGATTCCAATCGATACAAGTAAACCTAATCCTAATGGTTACGAGTATGATAATCTC 176
Query 284 TATCTCGACATGAACGGAATCATTCATCCATGTTTCCATCCTGAAGACAAACCTTCTCCA 343
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 177 TATCTCGACATGAACGGAATCATTCATCCTTGTTTCCATCCTGAAGATAAACCTTCTCCT 236
Query 344 ACTACATTTACGGAAGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTTGTTATG 403
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACTACGTTTACGGAGGTGTTTCAATGTATGTTCGATTACATTGATAGGCTTTTTGTTATG 296
Query 404 GTTCGACCTCGGAAGCTCTTATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTCGACCTCGGAAGCTCTTATTCATGGCTATTGATGGTGTTGCTCCAAGAGCTAAAATG 356
Query 464 AATCAACAGAGAGCTAGAAGGTTTAGAGCTGCTAAAGATGCAGCTGAAGCAGCAGCTGAA 523
|||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||
Sbjct 357 AATCAACAGAGAGCTAGACGATTTAGAGTTGCAAAAGATGCAGCTGAAGCAGCAGCTGAA 416
Query 524 GAAGAGCAGCTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAAGTTGCCTCCTAAAGTGGAT 583
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 417 GAAGAGCAGCTGCGGGAAGAGTTTGAGAGAGAAGGGAAGAAATTGCCTCCTAAAGTAGAT 476
Query 584 TCTCAAGTTTTTGACTCTAATGTTATTACTCCTGGAACAGAGTTCATGGCTACTCTGTCC 643
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 TCTCAAGTTTTTGACTCTAATGTTATAACTCCTGGAACAGAGTTCATGGCTACTCTGTCG 536
Query 644 TTTGCGTTGCGATACTACATTCACGTTAGACTAAATTCTGATCCTGGGTGGAAAAATATT 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTGCGTTGCGATACTACATTCACGTTAGACTAAATTCTGATCCTGGGTGGAAAAATATT 596
Query 704 AAGGTTATACTCTCGGATGCTAATGTTCCTGGCGAGGGGGAACACAAGATCATGTCATAC 763
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 597 AAGGTTATACTTTCGGATGCTAATGTTCCTGGTGAGGGGGAACACAAGATCATGTCGTAC 656
Query 764 ATACGTTGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGTCTATATGGT 823
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 ATACGTTGTAATAAGAACCATCCTGGTTATAACCCAAACACTCATCATTGCCTATATGGT 716
Query 824 TTGGACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTGGACGCCGATTTGATCATGCTGTCTTTGGCCACCCACGAAATTCATTTTTCAATCCTT 776
Query 884 CGTGAGGTTGTTTTCTTTCCTGGAGAGGAAGGCAAATGCTTCTTGTGTGGTCAAGAGGGG 943
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||
Sbjct 777 CGTGAGGTTGTTTTCTTTCCTGGAGAGAAAGACAAATGCTTCTTGTGTGGTCAAGTTGGG 836
Query 944 CACCGAGCAGCAGATTGTGAGGGAAAGATAAAGAGGAAGACAGGAGAAATGCTTGATAAT 1003
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 837 CACCGAGCAGCAGATTGTGAGGGAAAGATAAAGAGGAAGGCAGGAGAAATGCTTGATGAT 896
Query 1004 ACTGAGGCAGATGTTGTGGTGAAGAAGCCATATGAGTTTGTCAATATATGGATACTACGA 1063
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 897 ACTGAGGCAGATGTTGTGGTGAAGAAGCCATACGAGTTTGTCAATATATGGATACTTCGA 956
Query 1064 GAGTATTTGGAACACGACATGCAGATTCCTGG--AGC-a---aaaaaaaaTTTGGACCGC 1117
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 957 GAGTATTTGGAACACGACATGCAGATTCCTAACCAGCGATCGAAAAAAAATTTGGACCGC 1016
Query 1118 TTAATTGATGACTTCATCTTCATCTGTTTTTTCGTTGGGAATGATTTCCTGCCACATATG 1177
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1017 TTAATTGATGACTTCATCTTCATTTGTTTTTTCGTTGGGAATGATTTCCTGCCACATATG 1076
Query 1178 CCTACGCTCGAGATACGGGAGGGTGCTATAGAACTGCTGATGTCTGTGTACAAGAATAAG 1237
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCTACGCTAGAGATACGGGAGGGTGCTATAGAACTGCTGATGTCTGTGTACAAGAATAAA 1136
Query 1238 TTTAGATCAGCaaaaaaaTACTTAACCGATTCAAGCAAGCTGAACTTAAGAAATGTTGAG 1297
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1137 TTTAGATCAGCAAAAAAATACTTGACCGATTCAAGCAAGCTGAACTTAAGAAATGTGGAG 1196
Query 1298 CGTTTCATCAAGGCCGTTGGGATGTATGAAAATCAAATATTTCAGAAGAGAGCACAAGTA 1357
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1197 CGTTTCATCAAGGCCGTTGGGACCTATGAAAATCAGATATTTCAGAAGAGAGCACAAGTA 1256
Query 1358 CAGCAGAGGCAATCAGAAAGGTTTCGTCGTGACAAAGCTCGTGACAAAGCTCGTGACAAT 1417
|| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |
Sbjct 1257 CAAAAGAGGCAATCAGGAAGGTTTATTCGTGACAAAGCTCGTGAAAAAGCTCGTGACAGT 1316
Query 1418 GCTCGTGACAATGCTCAAGCAAGCAGACAATTCTCTGGCAAGTTGGTGCAATTAGATTCT 1477
| | | ||| || ||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 1317 G-T--T--CAA-GC--AAGCA-G-A-A-AATTCTCTGGCAAGTTGGTGCAATTAGATTCT 1364
Query 1478 CTAGATGAAGTGTCTGATTCATTGCATTCATCACCTTCACGAAAATATTTGCGTCTGTCT 1537
||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||
Sbjct 1365 CTAGATGAAGTGTCTGATTCATTGCATTCCTCACCTCCACGAAAACATTTGCGTTTGTCT 1424
Query 1538 TTGGATGATAACATTGGTGTGGCGAATGTTGAAACAGAAAATAGCCTCAAAGCAGAAG 1595
|||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1425 TTGGATAATAACATTGGTGTGGCGAATGTTGAAACAGAAAATAGCTTCAAAGCTGAAG 1482
Score = 1118 bits (605), Expect = 0.0
Identities = 760/834 (91%), Gaps = 14/834 (2%)
Strand=Plus/Plus
Query 2372 GATGGGATGAATGGTTACATAGCTTCATGTGGTGGAGATAGTCAGCCTTCATGTTTCTGC 2431
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2364 GATGGGATGAATGGTTACATAGCTTCATGTGGTGGAGATAGTCAGCCTCCATGTTTCAGC 2423
Query 2432 TCCACAGTCGAGGGTATGGAAGATGTTTTAACCAATCAAGTCATTTGTGCCATATACAAA 2491
||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2424 TCCCCAGTCGAGGGCATGGAAGATGTTTTAGCCAATCATGTCATTTGTGCCATATACAAA 2483
Query 2492 CTTCCAGAAGATATCAGAGGCAGTGAGATTACTCATCAGATTCCAAGATTGGCAATCCCT 2551
|||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||
Sbjct 2484 CTTCCAGATGATATCAGAGGCAGCGAGATTACTCATCAAATTCCAACATTGAAAATCCCT 2543
Query 2552 AAAAAGACTATATC-TCTAGTGGATTTGAAATCTGGAGGTCTTCTATGGCATGAAGATGG 2610
||| |||||||| | |||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 2544 AAACAGACTATA-CATCTAGTGGATTTGAAAGCTGAAGGTCTTCTCTGGCATGAAGATGG 2602
Query 2611 GGACAAAAGAAGAGCTCCTCCAAAGGTTATAAAAATCAAGAGGTATAATCCAGAAGGATC 2670
|||| |||| |||||||| |||| |||| ||||||||||||||||||||| ||||||||
Sbjct 2603 TGACAGAAGACGAGCTCCTGCAAAAGTTAAAAAAATCAAGAGGTATAATCCCGAAGGATC 2662
Query 2671 TATTTCTGGGGGTAGGCTTGGGAAGGCATCTCATAGACTTGTGTTGCAAACAATAAATGC 2730
|||||||||| |||||||||||||||| | || || |||||||||||||||||||||||
Sbjct 2663 TATTTCTGGGAATAGGCTTGGGAAGGCAGCACACAGGCTTGTGTTGCAAACAATAAATGC 2722
Query 2731 CCAACCTGATTA-TATGAACATCAACTCGGAACCAGCGTTGTGTCCAAATACTGTTTTCC 2789
|||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2723 CCAACCTGAT-AGTACGCACATCAACTCGGAACCAGCGTTGTGTCCAAATACTGTTTTCC 2781
Query 2790 AGAACGAACGAGTGCCGAAAAAGA-TCCCTA-CATTTAAAGATAATGGGATACAATGGAT 2847
||||| ||||||||||||||| || |||| | ||||| ||| |||||||||||||||||
Sbjct 2782 AGAACCAACGAGTGCCGAAAA-GAATCCC-AGCATTTCGAGAAAATGGGATACAATGGAT 2839
Query 2848 AAGCCCTCCTCCGAGTCAAATCACTCCGAAGAAGATGAATAGCCCTCAAAGGCAAAAGGC 2907
||||||||| || |||||||||||||||||||||||| |||||| |||| |||||| |
Sbjct 2840 AAGCCCTCC---GACTCAAATCACTCCGAAGAAGATGAAAAGCCCTGAAAGTCAAAAGAC 2896
Query 2908 TTGGAAGAAGGATGAAACCCCTCAGAGTCGAGAGAAATCGAAGAAGCTGAAAAGCTCTCT 2967
| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2897 TAGGAAGAAGAATGATACCCCTCAGAGTCGAGACAAATCGAAGAAGCTGAAAAGCTCTCT 2956
Query 2968 GAAAGTAAACCCTTTGAAGATGAAGAAAACTAAAAGCCCTCAGAGAGAGTTCACTCGAGA 3027
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 2957 GAAAGTAATCCCTTTGAAGATGAAGAAAACTAAAAACCCTCAGAGAGATTTCACTCGGGG 3016
Query 3028 GAAGAAGAAGGAAAACATAACCCCTCAAAGGAAACTCACTAAGGCACAGAGGCAGGTGAA 3087
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||
Sbjct 3017 GAAGAAGAAGGAAAACATAACCCCTCAAAGGAAACCCACTAAGGCGGAGAGGCAGGCGAA 3076
Query 3088 ACACATACGCATGATGGAAGAGGCGAAAATGATAAAACAGAGGAAAAAAGAGAAGTATTT 3147
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 3077 ACACATTCGCATGATGGAAGAGGCGAAAAGGATAAAAGAGAGGAAAAAAGAGAAGTATTT 3136
Query 3148 AAGAAAGAAAGCCAAATATGCACAAGGAGCTCCTCCCAAAACAGCTTGAGCTTC 3201
||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 3137 AAGAAAGAAAGCCAAATATGCACAAA-AGGA--TCCCAACACAGCTTGAGCTTC 3187
Score = 1112 bits (602), Expect = 0.0
Identities = 700/748 (94%), Gaps = 4/748 (1%)
Strand=Plus/Plus
Query 1595 GAACTAGATAACGAAGAAGACTTAAAGTTTAAGCTTAAGAAACTACTGCGGGATAAAGGT 1654
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1620 GAACTAGATAACGGAGAAGACTTAAAGTTTAAGCTTAAGAAACTGCTGCGGGATAAATCT 1679
Query 1655 GATGGGTTCAGGTCAGGAAATGGAGAACAAGATAAGGTTAAGCTAAAT-AAAGTAGGATG 1713
|||| ||| || |||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 1680 GATGTGTTAAGCTCAGGAAAGGGAGAACAAGATAAGGTTAAGCTAGGTGCAA-CAGGATG 1738
Query 1714 GAGAGAGAGATATTACGAAGAGAAATTCGCAGCTAAGTCTGTGGAGGAAATGGAACAAAT 1773
||| || ||||| || |||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 1739 GAGGGAAAGATACTATGAAGAGAAATTCACAGCTAAGTCTGCCGAGGAAATGGAACTAAT 1798
Query 1774 ACGCAGAGATGTTGTTTTGAAGTACACAGAAGGTCTTTGTTGGATAATGCATTATTATTA 1833
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1799 ACGCAGAGATGTTGTTTTGAAGTATACCGAAGGTCTTTGTTGGATAATGCATTATTATTA 1858
Query 1834 TCATGGTGTTTGTTCCTGGAACTGGTTTTATCCATATCATTACGCACCTTTCGCATCAGA 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TCATGGTGTTTGTTCCTGGAACTGGTTTTATCCATATCATTACGCACCTTTCGCATCAGA 1918
Query 1894 TCTCAAGGGCCTTGAGAAACTAGATATTAAGTTTGAACTAGGTTCCCCGTTTAAACCATT 1953
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1919 TCTCAAGGGCCTTGATAGCCTAGATATTAAGTTTGAACTAGGTTCCCCGTTTAAACC-TT 1977
Query 1954 T-AATCAGCTTCTGGCTGTTCTTCCATCTGCAAGTGCACATGCTCTCCCAGAGTGCTATA 2012
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1978 TCAATCAACTTCTGGCTGTTCTTCCATCTGCAAGTGCACATGCTCTCCCGGAGTGCTATA 2037
Query 2013 GGTCATTGATGACAAATCCAGATTCGCCTATAGCTGACTTTTATCCTGCTGATTTTGAGA 2072
|| ||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 2038 GGACATTGATGACAGATCCAGCTTCGCCTATAGCTGATTTTTATGCTGCTGATTTTGAGA 2097
Query 2073 TTGACATGAATGGAAAACGCTACTCTTGGCAGGGTATATCGAAACTGCCTTTTGTTGAAG 2132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2098 TTGACATGAATGGAAAACGCTACTCTTGGCAGGGTATATCGAAACTGCCTTTTGTTGACG 2157
Query 2133 AAAAGCGTCTTCTGGAGGCAGCTGCGCAAGTGGAGAAATCACTGACGAACGAAGAAATTC 2192
||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2158 AAAGGCGTCTTCTGGAGGCAGCTGCACTAGTGGAGAAATCACTGACGAACGAAGAAATTC 2217
Query 2193 GAAGAAACAGTGCGTTGTTTGACATGCTCTTTGTGGTTGCTTCTCATCCCCTTGGTGAAC 2252
|||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||| |||||
Sbjct 2218 GAAGAAACAGTGTGTTGTTTGACATGCTGTTTGTTGTTGCATCTCATCCCCTTGCTGAAC 2277
Query 2253 TCATCCGTTCTCTTAATAGCCGTACCAACAACTTGAGCAATGAAGAACGTGCAACTATCA 2312
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2278 TCATCCGTTCTCTTAATAGCCGTACCAACAACTTGAGCAATGAAGAACGAGCAACTATCA 2337
Query 2313 TTGAAAAAATTGACCCTGGACTAAGTGA 2340
| || |||||||||||||||||||||||
Sbjct 2338 TCGAGAAAATTGACCCTGGACTAAGTGA 2365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130575532963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5