BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42560.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494779 jgi|Araly1|494779|fgenesh2_kg.8__595__AT5G42560.3 1580 0.0
> Ahg494779 jgi|Araly1|494779|fgenesh2_kg.8__595__AT5G42560.3
Length=1305
Score = 1580 bits (855), Expect = 0.0
Identities = 1133/1256 (90%), Gaps = 64/1256 (5%)
Strand=Plus/Plus
Query 1 ATAATTTTCTAAGAGGCGTGACTTTAAAAATCTGTAAAAAAGCAAATCCGAAGAAagaga 60
||||||||| |||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 1 ATAATTTTCAAAGAGGCGTGAC-TTAAAAATCTGCAAAAAAGCAAATCC-------GA-A 51
Query 61 gagagagaAGGTGATTTTGAAATTTCAGATAACGCAGAAtttttttATTCTCGCCGGAGT 120
||||||||||||||||||||||||||||||||||| | | | ||||| |||||||||||
Sbjct 52 GAGAGAGAAGGTGATTTTGAAATTTCAGATAACGCCG-A-TATTTTACTCTCGCCGGAGC 109
Query 121 TTTCTCCTCCCACCGTCTCTGATTCTCGTCGCCGCCGTACACAGTTGTTGTTCTCTGCCG 180
|||||||| |||||||||||| |||||| |||||||||||||||||||| |||||| |||
Sbjct 110 TTTCTCCT-CCACCGTCTCTGCTTCTCGCCGCCGCCGTACACAGTTGTTCTTCTCTCCCG 168
Query 181 TTTCTGCAAGATGATTGGATCGTTTCTTACAAGAGGATT-G-G--TG---------ATGG 227
||||| |||||||||||||||||||||||||||||| || | | || ||||
Sbjct 169 TTTCTTCAAGATGATTGGATCGTTTCTTACAAGAGGCTTGGTGTATGAAAATCATAATGG 228
Query 228 TGTTGGGCTATGCTTACCCTGCGTATGAATGTTACAAGACTGTTGAAAAGAATAGGCCTG 287
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TGTTGGGTTATGCTTACCCTGCGTATGAATGTTACAAGACTGTTGAAAAGAATAGGCCTG 288
Query 288 AAATCGAGCAACTTCGCTTTTGGTGTCAGTACTGGATATTGGTTGCTTGCTTGACAGTTT 347
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 289 AAATTGAGCAACTTCGCTTTTGGTGCCAGTACTGGATATTGGTTGCTTGCTTGACAGTTT 348
Query 348 TTGAGAGAGTTGGTGATGCGTTTGTTTCATGGGTTCCGATGTACAGTGAAGCTAAGTTGG 407
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 349 TTGAGAGAGTTGGTGATGCGTTTGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTAG 408
Query 408 CATTCTTCATATACCTGTGGTATCCTAAAACCAGGGGTACTACATATGTCTACGAGTCCT 467
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 409 CATTCTTCATATACCTGTGGTATCCTAAAACTAGGGGTACTACATATGTCTACGAGTCTT 468
Query 468 TCTTTAGGCCATATCTCTCACAGCATGAGAATGACATAGACCATAGTTTGCTCGAGCTAA 527
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 469 TCTTTAGGCCATATCTTTCACAGCATGAGAATGACATAGACCATAGTTTGTTGGAGCTAA 528
Query 528 GGACTAGAGCAGGAGATATGGCTGTTATATACTGGCAACGAGTTGCAAGTTATGGTCAGA 587
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 529 GGACAAGAGCTGGAGATATGGCTGTTATATACTGGCAACGAGTTGCAAGCTATGGTCAGA 588
Query 588 CCAGAATCCTTGAGATTTTGCAGTATGTTGCTGCAC-AATCAACTCCAAGACCGCAGCCA 646
| ||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 589 CTAGAATCCTTGAGATTTTGCAGTATGTTGCTG-ACCAATCAACTCCAAGGCCGCAGCCA 647
Query 647 CCTCAGAAACGTGGAGGTAGAGCTAATCAAGCTCCTGCGAAGCCTAAGAAAGCCCCTGTC 706
| || |||| |||||||||| | || || |||||||||||||||||||||
Sbjct 648 ----A-AA-CGTGAAGGTAGAGCT---C---CTGCT---AAGCCTAAGAAAGCCCCTGTC 692
Query 707 CCCCAATCAGAACCTGAAGAAGTATCATTGTCCTCGTCTTCTAGCTCATCTTCAAGTGAA 766
|||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 693 CCCCAACCAGAATCTGAAGAAGCATCATTACCCTCGTCCCCTAGCTCATCTTCAAGTGAA 752
Query 767 AATGAAGGTAATGAGCCAACCCGTAAAGTATCAGGCCCGTCAAGACCTAGACCAACAGTG 826
|||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 753 AATGAAGGTAATGAGCCAACCCGTAAAGCATCAGGCCCGTCAAGACCTAAACCGACAGTG 812
Query 827 ACATCTGTACCAGCTGCAGATCCCAAAAACGCGGGTACCACTCAGATAGCACAGAAATCA 886
|||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 813 ACATCTGTACCAGCCGCAGATCCCAAAAACGCGGATATCACTCAGATAGCACAAAAATCA 872
Query 887 GTAGCTTCCCCAATTGTGAACCC-ACCACAGTCAACCACCCAAGTGGAA-C----C-AAT 939
||||||||||| ||||||||||| ||| || |||||||||||||||||| | | |||
Sbjct 873 GTAGCTTCCCCGATTGTGAACCCGACC-CAATCAACCACCCAAGTGGAAACGGAACCAAT 931
Query 940 GCAGATAGAAGAAGTGGAAGGAGAGGCAGAATCAGGGAATGAAAATCCCAACCCGGAAGG 999
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 932 GCAGATAGAAGAAGTGGAAGGAGAGGCAGAATCAGGGAATGAAAATCCAAACCCGGAAGG 991
Query 1000 TCCAAAGGAGACAGTGATGGAGGAGACAATCAGGATGACTCGTGGGAGGTTGAGGAAGAC 1059
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TCCAAAAGAGACGGTAATGGAGGAGACAATCAGGATGACTCGTGGGAGGTTGAGGAAGAC 1051
Query 1060 GCGTTCGGAAGAAAGCCGTTGA-A-A-GAAGAAGAAGAAGCTCAATCCAAAAAATTGTTA 1116
|||||| ||||||||||||||| | | ||||||||||||||| ||| |||||||||||||
Sbjct 1052 GCGTTCAGAAGAAAGCCGTTGATAGAAGAAGAAGAAGAAGCTGAATTCAAAAAATTGTTA 1111
Query 1117 CTTACTTGCATAACAGTGGTCTCTCTTCTCTCTTACTCTATGTTTCCTGCTTCTAGAATT 1176
|||||||||||||| | |||||||||||||||| || | |||||||||||||
Sbjct 1112 ATTACTTGCATAACATTTGTCTCTCTTCTCTCTT--TC-------C-TGCTTCTAGAATT 1161
Query 1177 ACGTTGACAGGAACTAACAACTAGTGGGAATGGTT-GTATGAAAAGTTAATCTGTT 1231
||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||
Sbjct 1162 ACGTTGACAGGAACTAACAACTAGTGGGAATGGTTTGTATGAACAGTAAATTTGTT 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5