BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42567.1
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948923 jgi|Araly1|948923|scaffold_800810.1 516 5e-146
Ahg948921 jgi|Araly1|948921|scaffold_800808.1 516 5e-146
Ahg948919 jgi|Araly1|948919|scaffold_800806.1 516 5e-146
Ahg948916 jgi|Araly1|948916|scaffold_800803.1 516 5e-146
Ahg948918 jgi|Araly1|948918|scaffold_800805.1 510 2e-144
Ahg948917 jgi|Araly1|948917|scaffold_800804.1 510 2e-144
Ahg952316 jgi|Araly1|952316|scaffold_58500002.1 505 1e-142
Ahg949066 jgi|Araly1|949066|scaffold_800953.1 505 1e-142
Ahg497471 jgi|Araly1|497471|fgenesh2_kg.585__1__AT5G42955.1 505 1e-142
Ahg494722 jgi|Araly1|494722|fgenesh2_kg.8__538__AT5G42955.1 505 1e-142
Ahg952224 jgi|Araly1|952224|scaffold_47400001.1 494 2e-139
Ahg494746 jgi|Araly1|494746|fgenesh2_kg.8__562__AT5G42955.1 494 2e-139
Ahg333428 jgi|Araly1|333428|fgenesh1_pm.C_scaffold_1006000001 460 2e-129
Ahg497449 jgi|Araly1|497449|fgenesh2_kg.474__9__AT5G42955.1 268 1e-71
Ahg948922 jgi|Araly1|948922|scaffold_800809.1 263 7e-70
Ahg497454 jgi|Araly1|497454|fgenesh2_kg.474__14__AT5G42957.1 230 7e-60
Ahg315391 jgi|Araly1|315391|fgenesh1_pm.C_scaffold_2000424 128 3e-29
> Ahg948923 jgi|Araly1|948923|scaffold_800810.1
Length=389
Score = 516 bits (279), Expect = 5e-146
Identities = 326/349 (93%), Gaps = 2/349 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 21 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 141 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 200
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 201 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACACT 259
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 319
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
|||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 320 GAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTTGA 368
> Ahg948921 jgi|Araly1|948921|scaffold_800808.1
Length=389
Score = 516 bits (279), Expect = 5e-146
Identities = 326/349 (93%), Gaps = 2/349 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 21 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 141 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 200
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 201 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCT 259
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 319
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
|||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 320 GAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTTGA 368
> Ahg948919 jgi|Araly1|948919|scaffold_800806.1
Length=390
Score = 516 bits (279), Expect = 5e-146
Identities = 327/350 (93%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 22 ATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 81
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 82 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTGTT 141
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |
Sbjct 142 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAATTGCTGTTGTCTTTGAAAATGGAACC 201
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAA-GGAAAAGTATGTCACGATACGC 238
|| | |||||||||||||||| ||||||||||||||| |||||| | ||||||||||| |
Sbjct 202 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAA-TGTGTCACGATACAC 259
Query 239 TTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 319
Query 299 AGAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 320 AGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCAAAAGTACTTGA 369
> Ahg948916 jgi|Araly1|948916|scaffold_800803.1
Length=390
Score = 516 bits (279), Expect = 5e-146
Identities = 327/350 (93%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 22 ATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 81
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 82 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 141
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 142 GTTAAACTCACTCCTAAGTGTGCGTTGGATATAATCGCTGTTGTCTTTGAAAATGGAACC 201
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAA-GGAAAAGTATGTCACGATACGC 238
|| | |||||||||||||||| ||||||||||||||| |||||| | |||||||| || |
Sbjct 202 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAA-TGTGTCACGAAACAC 259
Query 239 TTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 319
Query 299 AGAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 320 AGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCAAAAGTACTTGA 369
> Ahg948918 jgi|Araly1|948918|scaffold_800805.1
Length=390
Score = 510 bits (276), Expect = 2e-144
Identities = 326/350 (93%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 22 ATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 81
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||
Sbjct 82 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTGTT 141
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| |
Sbjct 142 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAATTGCTGTTGTCTTTGAAAATGGAACC 201
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAA-GGAAAAGTATGTCACGATACGC 238
|| | |||||||||||||||| |||||||| |||||| |||||| | ||||||||||| |
Sbjct 202 AT-CTCTGATCCTTGTTGCAACGATCTCGTTAAAGAAGGGAAAA-TGTGTCACGATACAC 259
Query 239 TTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 319
Query 299 AGAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 320 AGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCAAAAGTACTTGA 369
> Ahg948917 jgi|Araly1|948917|scaffold_800804.1
Length=390
Score = 510 bits (276), Expect = 2e-144
Identities = 326/350 (93%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 22 ATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 81
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 82 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 141
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||| |
Sbjct 142 GTTAAAATCACACCTAAGTGTGCGTTGGATATAATTGCTGTTGTCTTTGAAAATGGAACC 201
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAA-GGAAAAGTATGTCACGATACGC 238
|| | |||||||||| ||||| ||||||||||||||| |||||| | ||||||||||| |
Sbjct 202 AT-CTCTGATCCTTGCTGCAACGATCTCGTCAAAGAAGGGAAAA-TGTGTCACGATACAC 259
Query 239 TTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 319
Query 299 AGAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 320 AGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCAAAAGTACTTGA 369
> Ahg952316 jgi|Araly1|952316|scaffold_58500002.1
Length=389
Score = 505 bits (273), Expect = 1e-142
Identities = 324/349 (93%), Gaps = 2/349 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 21 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTAAAGCAAAATCATTATGGAATACTTGTCTT 140
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 141 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 200
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 201 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCT 259
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 319
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 320 GAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTTGA 368
> Ahg949066 jgi|Araly1|949066|scaffold_800953.1
Length=390
Score = 505 bits (273), Expect = 1e-142
Identities = 325/350 (93%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
|||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 21 ATGTCTAAATTTTGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 80
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 141 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 200
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 201 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTTTGTCACGATACGCT 259
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 319
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCT-CAATCTCCAAAAGTGCTTGA 348
|||| ||||||| ||||| |||||||| | |||||||||||||||| |||
Sbjct 320 GAGTAATGACTTATGGAATCATTGTGT-TACAATCTCCAAAAGTGCATGA 368
> Ahg497471 jgi|Araly1|497471|fgenesh2_kg.585__1__AT5G42955.1
Length=348
Score = 505 bits (273), Expect = 1e-142
Identities = 324/349 (93%), Gaps = 2/349 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| || | ||||||| ||||||||||||||||||| |
Sbjct 1 ATGTCTAAATTTAGCTCTCAAATTACTATGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 60
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 120
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 121 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 180
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 181 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCT 239
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 300 GAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTTGA 348
> Ahg494722 jgi|Araly1|494722|fgenesh2_kg.8__538__AT5G42955.1
Length=414
Score = 505 bits (273), Expect = 1e-142
Identities = 324/349 (93%), Gaps = 2/349 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 43 ATGTCTAAATTTAGCTCTCATATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 102
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 103 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 162
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 163 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 222
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 223 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCT 281
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 282 TATTAAATATATTGCAGATAAACCCATGTTACTTGCCCACGAAACAGAATACTTGAAGAA 341
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 342 GAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTTGA 390
> Ahg952224 jgi|Araly1|952224|scaffold_47400001.1
Length=390
Score = 494 bits (267), Expect = 2e-139
Identities = 322/349 (92%), Gaps = 2/349 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| || | ||||||| ||||||||||||||||||| |
Sbjct 21 ATGTCTAAATTTAGCTCTCAAATTACTATGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|| ||||||| |||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 141 GTAAAAATCAATCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 200
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAAGGAAAAGTATGTCACGATACGCT 239
|| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 201 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCT 259
Query 240 TATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 260 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACACAATACTTGAAGAA 319
Query 300 GAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 320 GAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTTGA 368
> Ahg494746 jgi|Araly1|494746|fgenesh2_kg.8__562__AT5G42955.1
Length=348
Score = 494 bits (267), Expect = 2e-139
Identities = 324/351 (92%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGT-TATTCATTGTTGTAGCTTTGGTGTGTGC 59
||||||||||||| ||||| |||| || | |||| ||||||||| |||||||||||||
Sbjct 1 ATGTCTAAATTTAGCTCTCAAATTACCAC-TCTATTTATTGTTGTAACTTTGGTGTGTGC 59
Query 60 GTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCT 119
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 GTTTGTTCTGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATTATTATGGAATACTTGTCT 119
Query 120 TGTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAA 179
| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 120 TCTTAAAATCACTCCTAACTGTGCGTTGGATATAATCGCTGTTGTCTTTGAAAATGGAAC 179
Query 180 CATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAA-GGAAAAGTATGTCACGATACG 237
||| | |||||||||||||||| |||||| |||||||| |||||| | |||||||||| |
Sbjct 180 CAT-CTCTGATCCTTGTTGCAACGATCTCATCAAAGAAGGGAAAA-TGTGTCACGATAAG 237
Query 238 CTTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAG 297
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAG 297
Query 298 AAGAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 AAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCAAAAGTGCTTGA 348
> Ahg333428 jgi|Araly1|333428|fgenesh1_pm.C_scaffold_1006000001
Length=390
Score = 460 bits (249), Expect = 2e-129
Identities = 301/326 (92%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 60
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 120
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|||||||||||||||||||||||||||||||| | |||| ||||||||||| ||| | |
Sbjct 121 ATTAAAATCACTCCTAAGTGTGCGTTGGATATAATTGCTGTTGTCTTTGAAATTGGTACC 180
Query 181 ATGC-CTGATCCTTGTTGCAATGATCTCGTCAAAGAA-GGAAAAGTATGTCACGATACGC 238
|| | |||||||||| ||||| ||||||||||||||| |||||| | ||||||||||| |
Sbjct 181 AT-CTCTGATCCTTGCTGCAACGATCTCGTCAAAGAAGGGAAAA-TGTGTCACGATACAC 238
Query 239 TTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
Query 299 AGAGTGATGACTTGTGGAAACATTGT 324
||||||||||||||||||| ||||||
Sbjct 299 AGAGTGATGACTTGTGGAATCATTGT 324
> Ahg497449 jgi|Araly1|497449|fgenesh2_kg.474__9__AT5G42955.1
Length=384
Score = 268 bits (145), Expect = 1e-71
Identities = 178/194 (92%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 43 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 102
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 103 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 162
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCGCTGCTGTCTTTGAAAATGGAAAC 180
|| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||| |
Sbjct 163 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 222
Query 181 ATGC-CTGATCCTT 193
|| | |||||||||
Sbjct 223 AT-CTCTGATCCTT 235
Score = 189 bits (102), Expect = 1e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 226 TGTCACGATACGCTTATTAAGTATATTGCAAATAAACCCATGTTAATTGCCCACGAAACA 285
|||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 238 TGTCACGATATGCTTATTAAATATATTGCAGATAAACCCATGTTCATTGCCCACGAAACA 297
Query 286 GAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATCTCCAAAAGTGCT 345
||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 298 GAATACTTGAAGAAGAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCT 357
Query 346 TGA 348
|||
Sbjct 358 TGA 360
> Ahg948922 jgi|Araly1|948922|scaffold_800809.1
Length=214
Score = 263 bits (142), Expect = 7e-70
Identities = 178/195 (91%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 21 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 80
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 81 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 140
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTC-GCTGCTGTCTTTGAAAATGGAAA 179
|| |||||||||||||||||||||||||||||| || | || |||||||||||||||||
Sbjct 141 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCTGGTGTTGTCTTTGAAAATGGAAC 200
Query 180 CATGC-CTGATCCTT 193
||| | |||||||||
Sbjct 201 CAT-CTCTGATCCTT 214
> Ahg497454 jgi|Araly1|497454|fgenesh2_kg.474__14__AT5G42957.1
Length=291
Score = 230 bits (124), Expect = 7e-60
Identities = 146/157 (93%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||| |
Sbjct 1 ATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 60
Query 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCTT 120
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 120
Query 121 GTTAAAATCACTCCTAAGTGTGCGTTGGATATAGTCG 157
|| |||||||||||||||||||||||||||||| |||
Sbjct 121 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCG 157
Score = 200 bits (108), Expect = 5e-51
Identities = 126/135 (93%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 214 GAAGGAAAAGTATGTCACGATACGCTTATTAAGTATATTGCAAATAAACCCATGTTAATT 273
||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 157 GAAGGGAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATT 216
Query 274 GCCCACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATC 333
||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 217 GCCCACGAAACTGAATACTTGAAGAAGAGTGCTGACTTGTGGAATCATTGTGTCTCAATC 276
Query 334 TCCAAAAGTGCTTGA 348
|| |||| |||||||
Sbjct 277 TCGAAAATTGCTTGA 291
> Ahg315391 jgi|Araly1|315391|fgenesh1_pm.C_scaffold_2000424
Length=309
Score = 128 bits (69), Expect = 3e-29
Identities = 106/124 (85%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 1 ATGTCTAAATTTAATTCTCAGATTAGTACGTTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
||| ||||| ||| || || |||| |||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAAACTTAGCTCCCATATTACTACGCTATTCATTGTTGTAGCTTTGGTGTGTGCG 60
Query 61 TTTGTTCCGGT-TTTCTCAGTCGAAGAAGCTGAAGCAAACTTATTATGGAATACTTGTCT 119
|||||||| || ||| ||||| |||||||| || ||||| | ||||||| | ||||||||
Sbjct 61 TTTGTTCCTGTATTT-TCAGTTGAAGAAGCCGAGGCAAAATCATTATGGGACACTTGTCT 119
Query 120 TGTT 123
||||
Sbjct 120 TGTT 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12362410836
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5