BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42610.1
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948997 jgi|Araly1|948997|scaffold_800884.1 1321 0.0
> Ahg948997 jgi|Araly1|948997|scaffold_800884.1
Length=928
Score = 1321 bits (715), Expect = 0.0
Identities = 844/908 (93%), Gaps = 2/908 (0%)
Strand=Plus/Plus
Query 5 CTCAAGATTATCTTTCTCTTTTAATGGCTCTACGCAGAGCAATCACTAAACGTCTCATTG 64
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCAAGATTCTCTCTCTCTCTTAATGGCTCTACGCAGAGCAATCACTAAACGTCTCATTG 60
Query 65 ACTGTTACAGATCCGATGTAACACAACAACACTCATTTTTCAGACAACTCTCACCCTATA 124
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ACAGTTACAGATCCGATGTAACACAACAACACTCATTTTTCAGACAACTCTCACCATATA 120
Query 125 ACATGAAGATCCATCGTCAGTACATGACTTCACCTAATGGTCCGAATCTTACGGACCGGA 184
| ||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 121 AGATGAAGATCTATCGTCAGTACATGACCTCACCGAATGGTCCGAATCTTACAGACCGGA 180
Query 185 TTGTCGGGATCCGCATCGAGTCCGTTTCTCCGCCGAGGCGGGAGGAAACA-CCGGTGATG 243
|||||||||||| ||||||||||||| |||| || | ||||||||||| || ||| |
Sbjct 181 TTGTCGGGATCCACATCGAGTCCGTTGCTCCTCCCAAACGGGAGGAAACGGCCT-TGAAG 239
Query 244 GGTTTATCAGTTAGTGAGACTAAGAAGTTGTTGAGGCTATATCAAATGGAGAAAGTGAAA 303
|||||||| || |||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 240 GGTTTATCGGTGAGTGAGACAAAGAAGTTGTTGAGGATATATCAAATGGAGAAGGTGAAA 299
Query 304 GAGAGACTCAGAGAGATTCCTAAAAGCTCTGTTTCTTATTGGGAATTTATTCAGATCTGT 363
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GCGAGACTCAGAGAGATTCCTAAAAGCTCTGTTTCTTATTGGGAATTTGTTCAGATCTGT 359
Query 364 TGTGAGAGTTGTGGGAATGATGAGCAAGGTTCTCAAATGGCTAAGTCTTTGGATCATTCG 423
|||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct 360 TGTGAGAGTTGTGGAAACGATGAGCAAGGTTCTCAAATGGCAAACTCTTTGGATCATTCG 419
Query 424 GGATGTGTCGTCGTTTTAGGAGACATAGTTTTTCTTCATCCCCATCAGATAGCCAAGTCT 483
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 420 GGATGCGTCGTCGTTTTAGGAGATATAGTATTTCTTCATCCCCATCAGATAGCCAAATCT 479
Query 484 ATGGAGGCAATGATCAAGCAAACATCAGTACTTCCAAACGATCCAAGGAAAGAAGAGTTA 543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 ATGGAGGCAATGATCAAGCAAACATCAATACTTCCAAACGATCCAAGGAAAGAAGAGTTA 539
Query 544 GTTCAGCTTGCGACTACAAAGAAGAGTATTGACATAGAGGCACGACGTATAGTGCAGGCC 603
|||| ||||| ||||||||||||| |||||||||||||||| | ||| ||||| ||||
Sbjct 540 GTTCTGCTTGAGACTACAAAGAAGTGTATTGACATAGAGGCCCAACGCATAGTAAAGGCT 599
Query 604 GAGTTATATTGTGGTCTCGGTTTCCTAGCTGTGCAAACTATAGGCTTTATGCGTCTTACC 663
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GAGTTATATTGCGGTCTCGGTTTCCTAGCTGTGCAAACTATAGGCTTTACGCGTCTTACC 659
Query 664 TTTTGGGAACTAAGCTGGGACGTAATGGAACCCATCTGCTTCTTTGTCACAACCATTCAT 723
|||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||
Sbjct 660 TTTTGGGAACTAAGCTGGGATGTAATGGAACCCATATGCTTCTTTGTTACATCCATTCAT 719
Query 724 TTCATCCTCGGTTACATCTTTTTTCTTCGGACATCGACGGAACCATCATTCGAAGGACTT 783
|||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 720 TTCATCTTCGGTTACCTCTTTTTTCTTCGGACATCCACGGAACCATCCTTCGAAGGTCTT 779
Query 784 TTTCGACAGCGGTTTAAGACCAAACAGAAGAAGCTTATGGAGAGGCATGGATTTGATTTT 843
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 TTTCGACAACGGTTTAAGACCAAACAGAAGAAGCTTATGGAGAGGCATGGGTTTGATTTT 839
Query 844 CTGAGGTACAATGAGCTCAACTCTTTGTTCACAACATTTCCGTGTAAATTTCATTATCCG 903
||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||
Sbjct 840 CTGAGGTACAATGAGCTCAACTCCTTGTTCATACCATTTCCGTGTAAATCTCATTATCCG 899
Query 904 GTTTAGTT 911
|| |||||
Sbjct 900 GTATAGTT 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38008548249
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5