BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42630.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494773 jgi|Araly1|494773|fgenesh2_kg.8__589__AT5G42630.1 1698 0.0
> Ahg494773 jgi|Araly1|494773|fgenesh2_kg.8__589__AT5G42630.1
Length=1162
Score = 1698 bits (919), Expect = 0.0
Identities = 1090/1170 (93%), Gaps = 22/1170 (2%)
Strand=Plus/Plus
Query 3 TAAAAGTGTTGTTTCTGCAGAGctctctctctctctctcgttctctTTCCACACATTCTT 62
||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |
Sbjct 1 TAAAAGTGTTGTTTCTGCAGACCTCTCTCTCTTTCTCTTTTTCTCTTTCCACACATTC-T 59
Query 63 TGATCTCCACTATTTAAGTAGACAAGAATCATAAAGAAAATAGTGAGATGATGATGTTAG 122
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 60 TGATCTCCACTATTTAAATAGACAAGGATTATAAAGAAAATAGTGAGATGATGATGTTAG 119
Query 123 AGTCAAGAAACAGTATGAGAGCTTCAAACTCAGTCCCAGATCTGTCTCTTCAGATCAGTC 182
| |||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 120 ATTCAAGAAACACTATGAGAGCTTTAAACTCAATCCCAGATCTGTCCCTTCAGATCAGTC 179
Query 183 TTCCTAACTATCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTG 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCCTAACTCTCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTG 239
Query 243 ATTCTGGAAGCAGCCTCAGTGACCTGAGCCATGAGAACAACTTCTTCAACAAACCTCTCT 302
| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 240 ACTCCGGAAGCAGCCTCAGTGAGTTAAGCCATGAGAACAACTTCTTCAACAAACCTCTCT 299
Query 303 TGAGCTTAGGATTTG-AC--CATCATCATCAAAGGCGCTCAAACATGTTCCAACCTCAAA 359
|||||||||| |||| || ||||||||||||||| |||||||||||||||||| ||||
Sbjct 300 TGAGCTTAGGCTTTGAACATCATCATCATCAAAGGAACTCAAACATGTTCCAACCCCAAA 359
Query 360 TCTACGGTCGAGATTTCAAGAGAAGCTCATCATCAATGGTTGGTCTTAAACGAAGCATTC 419
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 TCTATGGCCGAGATTTCAAGAGAAGCTCATCATCAATGGTGGGTCTTAAACGAAGCATTA 419
Query 420 GTGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCACTTCGTCCATGCTGTTCAAC 479
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 GAGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCATTTCGTCCATGCTGTTCAAC 479
Query 480 TTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGCTCATGAATGTGAAGG 539
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 480 TTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGTTGATGAATGTGAAGG 539
Query 540 ATCTAACCCTAGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAATGCACTG 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 ATCTAACCCTAGCTCATGTCAAGAGTCATTTGCAGATGTATAGAACAGTGAAATGCACTG 599
Query 600 ATAAAGGATCACCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACA 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATAAAGGATCATCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACA 659
Query 660 ATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCATCTG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 660 ATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCAACTG 719
Query 720 TGCAAAAGACCCAAAGAGCTTCATGGTCATCGACAAAGGAAGTATCTAGGAGCATATCTA 779
|||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||
Sbjct 720 TGCAAAAGACCCAAAGAGCTCCATGGTCATCCACAAAGGGAGTACCTAGGAGCATATCTA 779
Query 780 CACAAGCATATTCTCACTTGGGAACAACTCATCACACTAAGGACAATGAAGAGAAAGAGG 839
|||||||| || |||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 780 CACAAGCAGATCCTCATTTGGGAACAACTCAACACACTAAGGAAAATGAGGAGAAAGAGG 839
Query 840 ATACCAACATTCATCTCAATTTGGATTTCACATTGGGGCGGCCTAGTTGGGGGATGGAAT 899
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 840 CGACCAATATTCATCTCAATTTGGAATTCACATTGGGGCGGCCGAGTTGGGGGATGGACT 899
Query 900 ATGCGGAACCCTCCAGTGATTTAACCCTTCTCAAGTGCTAATTGCCT---T---A-AGCT 952
|||||||||| || || |||||||||||||||||||||||||||||| | | ||||
Sbjct 900 ATGCGGAACCGTCTAGCGATTTAACCCTTCTCAAGTGCTAATTGCCTAACTTGGAGAGCT 959
Query 953 ACAACAAATAAGTCAGCTTAGGTTACCAGTTTTAACATAAT-T-TT-AACTTGTTTTGAT 1009
|||||||||||| | |||| ||||||| ||||||||||| | || |||||||||||||
Sbjct 960 ACAACAAATAAG-C---TTAGATTACCAGGTTTAACATAATATATTTAACTTGTTTTGAT 1015
Query 1010 CATATGAGCTTCGGAAGAATCATATTATCATCATATATGAACTTCTTTCCAAGAATGTTC 1069
||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 1016 CATATGAGCTTTGGAAGAATCATATTATCATCATATATGAACTTCTTGC-AAGAATCTTC 1074
Query 1070 TATGAGTTTTTTGATATGTATAATCAAGAGAATCG-TTTGAAGTAGTAAGTATTGTTGTA 1128
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1075 TATGAGTTTTTTGATATGTATAATCAAGAAAATCGATTT-AAGTAGTAAGTATTGTTGTA 1133
Query 1129 GTGCGATGAGAAGGGAGTACAAGTTCAAGT 1158
||| ||||||||||||||||||||||||||
Sbjct 1134 GTG-GATGAGAAGGGAGTACAAGTTCAAGT 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5