BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42630.1 Length=1158 Score E Sequences producing significant alignments: (Bits) Value Ahg494773 jgi|Araly1|494773|fgenesh2_kg.8__589__AT5G42630.1 1698 0.0 > Ahg494773 jgi|Araly1|494773|fgenesh2_kg.8__589__AT5G42630.1 Length=1162 Score = 1698 bits (919), Expect = 0.0 Identities = 1090/1170 (93%), Gaps = 22/1170 (2%) Strand=Plus/Plus Query 3 TAAAAGTGTTGTTTCTGCAGAGctctctctctctctctcgttctctTTCCACACATTCTT 62 ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| | Sbjct 1 TAAAAGTGTTGTTTCTGCAGACCTCTCTCTCTTTCTCTTTTTCTCTTTCCACACATTC-T 59 Query 63 TGATCTCCACTATTTAAGTAGACAAGAATCATAAAGAAAATAGTGAGATGATGATGTTAG 122 ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 60 TGATCTCCACTATTTAAATAGACAAGGATTATAAAGAAAATAGTGAGATGATGATGTTAG 119 Query 123 AGTCAAGAAACAGTATGAGAGCTTCAAACTCAGTCCCAGATCTGTCTCTTCAGATCAGTC 182 | |||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 120 ATTCAAGAAACACTATGAGAGCTTTAAACTCAATCCCAGATCTGTCCCTTCAGATCAGTC 179 Query 183 TTCCTAACTATCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTG 242 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTCCTAACTCTCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTG 239 Query 243 ATTCTGGAAGCAGCCTCAGTGACCTGAGCCATGAGAACAACTTCTTCAACAAACCTCTCT 302 | || ||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 240 ACTCCGGAAGCAGCCTCAGTGAGTTAAGCCATGAGAACAACTTCTTCAACAAACCTCTCT 299 Query 303 TGAGCTTAGGATTTG-AC--CATCATCATCAAAGGCGCTCAAACATGTTCCAACCTCAAA 359 |||||||||| |||| || ||||||||||||||| |||||||||||||||||| |||| Sbjct 300 TGAGCTTAGGCTTTGAACATCATCATCATCAAAGGAACTCAAACATGTTCCAACCCCAAA 359 Query 360 TCTACGGTCGAGATTTCAAGAGAAGCTCATCATCAATGGTTGGTCTTAAACGAAGCATTC 419 |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 360 TCTATGGCCGAGATTTCAAGAGAAGCTCATCATCAATGGTGGGTCTTAAACGAAGCATTA 419 Query 420 GTGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCACTTCGTCCATGCTGTTCAAC 479 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 420 GAGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCATTTCGTCCATGCTGTTCAAC 479 Query 480 TTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGCTCATGAATGTGAAGG 539 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 480 TTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGTTGATGAATGTGAAGG 539 Query 540 ATCTAACCCTAGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAATGCACTG 599 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 540 ATCTAACCCTAGCTCATGTCAAGAGTCATTTGCAGATGTATAGAACAGTGAAATGCACTG 599 Query 600 ATAAAGGATCACCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACA 659 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATAAAGGATCATCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACA 659 Query 660 ATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCATCTG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 660 ATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCAACTG 719 Query 720 TGCAAAAGACCCAAAGAGCTTCATGGTCATCGACAAAGGAAGTATCTAGGAGCATATCTA 779 |||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||| Sbjct 720 TGCAAAAGACCCAAAGAGCTCCATGGTCATCCACAAAGGGAGTACCTAGGAGCATATCTA 779 Query 780 CACAAGCATATTCTCACTTGGGAACAACTCATCACACTAAGGACAATGAAGAGAAAGAGG 839 |||||||| || |||| |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 780 CACAAGCAGATCCTCATTTGGGAACAACTCAACACACTAAGGAAAATGAGGAGAAAGAGG 839 Query 840 ATACCAACATTCATCTCAATTTGGATTTCACATTGGGGCGGCCTAGTTGGGGGATGGAAT 899 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 840 CGACCAATATTCATCTCAATTTGGAATTCACATTGGGGCGGCCGAGTTGGGGGATGGACT 899 Query 900 ATGCGGAACCCTCCAGTGATTTAACCCTTCTCAAGTGCTAATTGCCT---T---A-AGCT 952 |||||||||| || || |||||||||||||||||||||||||||||| | | |||| Sbjct 900 ATGCGGAACCGTCTAGCGATTTAACCCTTCTCAAGTGCTAATTGCCTAACTTGGAGAGCT 959 Query 953 ACAACAAATAAGTCAGCTTAGGTTACCAGTTTTAACATAAT-T-TT-AACTTGTTTTGAT 1009 |||||||||||| | |||| ||||||| ||||||||||| | || ||||||||||||| Sbjct 960 ACAACAAATAAG-C---TTAGATTACCAGGTTTAACATAATATATTTAACTTGTTTTGAT 1015 Query 1010 CATATGAGCTTCGGAAGAATCATATTATCATCATATATGAACTTCTTTCCAAGAATGTTC 1069 ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||| Sbjct 1016 CATATGAGCTTTGGAAGAATCATATTATCATCATATATGAACTTCTTGC-AAGAATCTTC 1074 Query 1070 TATGAGTTTTTTGATATGTATAATCAAGAGAATCG-TTTGAAGTAGTAAGTATTGTTGTA 1128 ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 1075 TATGAGTTTTTTGATATGTATAATCAAGAAAATCGATTT-AAGTAGTAAGTATTGTTGTA 1133 Query 1129 GTGCGATGAGAAGGGAGTACAAGTTCAAGT 1158 ||| |||||||||||||||||||||||||| Sbjct 1134 GTG-GATGAGAAGGGAGTACAAGTTCAAGT 1162 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43193264961 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5