BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42640.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948991 jgi|Araly1|948991|scaffold_800878.1 994 0.0
Ahg949002 jgi|Araly1|949002|scaffold_800889.1 955 0.0
Ahg948883 jgi|Araly1|948883|scaffold_800770.1 579 2e-164
Ahg931310 jgi|Araly1|931310|scaffold_303767.1 448 5e-125
> Ahg948991 jgi|Araly1|948991|scaffold_800878.1
Length=935
Score = 994 bits (538), Expect = 0.0
Identities = 793/913 (87%), Gaps = 29/913 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCCATCCCAAATAGGTTCAATATTTATGGTGGTGATACCACAAACCATCGTGAA 60
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 21 ATGTCTTCCATCCCAAATAGATTCAATATTTATGGTGGTGATACCTCAAACCATCGTGAA 80
Query 61 TCGCTTCCCATCGAAATGAATCACAACTCTC-GAATGGTTCGATCCATGTTCATTACATC 119
|| |||||||||||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct 81 TCACTTCCCATCGAAATGAATCACAACTC-CAAAATGGTTCGCTCGATGTTCATTACATC 139
Query 120 TGATCGCATGAATCATAGAGATTTGTTttcttctcctcctt-ctttctcttcttatcaaa 178
|||||||||||| |||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct 140 TGATCGCATGAACCATAGAGATTCGTTTTCTTCTCCTCCTTCCCTT-TCTTCTTATCAAA 198
Query 179 attcacatatctcttcatcttctGTTGGGTTTAATAATTCACATATGACTTATCATATGC 238
|||||||| |||||||||||| |||||| |||||||||||||||||| | | |
Sbjct 199 ATTCACATGTCTCTTCATCTTATGTTGGATTTAATAATTCACATATG----A-C--A--- 248
Query 239 TGAAAAGAAATTATGATTCTGTTTCCCGTGCTGATTATTTCTCTACTAAAGATCATTCTC 298
|||||||||| ||||||| |||| ||||| |||||||| |||||||||| | | ||
Sbjct 249 --AAAAGAAATTTTGATTCTATTTCTCGTGCCAATTATTTCCCTACTAAAGAGAAATATC 306
Query 299 ATTTTACTCAAGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTGTTCCTT 358
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 307 ATTTTACTCAAGTATCTTTCACTCAAACCATCATAAATAGGTATACAACTATTGTTCCTT 366
Query 359 CCAATATATTTGACACTGTTCACTATGATATTGGTCGTGTCAAACGTGCCATAGATTTTA 418
||||| ||||| ||| ||| |||||||| |||| ||||||||||||||||| |||| ||
Sbjct 367 CCAATCTATTTAACAATGTCCACTATGACATTGAACGTGTCAAACGTGCCATGGATTCTA 426
Query 419 GAAATATTTGGAATCCTAAATCTCATCTTCCaaaaaaaT-TTAATAGGCAATGCGAGATT 477
||||| |||||| |||| |||||||||||| ||| | || ||| |||| || ||||
Sbjct 427 CAAATACTTGGAACCCTATATCTCATCTTCC-AAAGTTTCTTGATAACCAATCCGGGATT 485
Query 478 TTGAATCCTACCCCTCTTAATATCGTCTTTCCGCACCAGGATTCAGCTGATCGTCAACAT 537
||||| ||||||||||| |||||||| ||||||||||| |||| ||||||||||||||
Sbjct 486 TTGAAGCCTACCCCTCTAAATATCGTGTTTCCGCACCAAGATTTTCCTGATCGTCAACAT 545
Query 538 TTAGACATTATTTTCTCGTCATCAAAGCACAACCATGTTTTC-CAAGATGGTCGATCCTT 596
|||||||| ||| || ||||||||||||||||| || |||| |||| |||||||||| |
Sbjct 546 TTAGACATGGTTTCCTTGTCATCAAAGCACAACCGTG-TTTCGCAAGCTGGTCGATCCCT 604
Query 597 GAAGAAAATTTCCGAACCAACCAATCTGTTTG-AAAAATCTAATTC-T-TAT-GATTCTC 652
|||||||||| || ||||||||||| | |||| |||||| | ||| | ||| ||||||
Sbjct 605 GAAGAAAATTCCCAAACCAACCAATATTTTTGAAAAAAT-TGGTTCTTATATAGATTCTG 663
Query 653 AAGAAGATGAG-AAAATCGATG-CTTATCAATATGATGGTCGTACACATAGTCTACCGTA 710
|| |||||||| ||||| |||| | |||| |||||||||||||||||||||||||||||
Sbjct 664 AAAAAGATGAGAAAAAT-GATGAC-GATCATTATGATGGTCGTACACATAGTCTACCGTA 721
Query 711 TACGAAATACGGTCCATATACATGTCCCAGGTGTAACGGTGTGTTTGATACTTCTCAAAA 770
|| ||||| ||||| ||||||||||| | ||||| |||||||| || || ||||||||
Sbjct 722 TAAGAAATTTGGTCCCTATACATGTCCTAAATGTAATGGTGTGTTGGACACCTCTCAAAA 781
Query 771 ATTTGCTGCACATATGTTATCTCACTACAATAATGAGACGGACAAAGAAAGAGACCAAAG 830
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct 782 ATTTGCTGCACATATGTTATCTCACTACAATAGTGAGACGAACAAAGAAAGAGATCAAAG 841
Query 831 ATTTCGTGCAAGAAATAAAAAACGATATCGTAAGTTTATGGACAGTCTTAAAATATCAAA 890
| | |||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||||
Sbjct 842 ACTGCGTGCAAGAAATAAAAAAAGATATCGTAAGTTCATGGAAAGTCTCAAAAGATCAAA 901
Query 891 ACAGAAGATATGA 903
|||||||||||||
Sbjct 902 ACAGAAGATATGA 914
> Ahg949002 jgi|Araly1|949002|scaffold_800889.1
Length=934
Score = 955 bits (517), Expect = 0.0
Identities = 786/913 (86%), Gaps = 29/913 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTCCATCCCAAATAGGTTCAATATTTATGGTGGTGATACCACAAACCATCGTGAA 60
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 21 ATGTCTTCCATCCCAAATAGATTCAATATTTATGGTGGTGATACCTCAAACCATCGTGAA 80
Query 61 TCGCTTCCCATCGAAATGAATCACAACTCTC-GAATGGTTCGATCCATGTTCATTACATC 119
|| |||||||||||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct 81 TCACTTCCCATCGAAATGAATCACAACTC-CAAAATGGTTCGCTCGATGTTCATTACATC 139
Query 120 TGATCGCATGAATCATAGAGATTTGTTttcttctcctcctt-ctttctcttcttatcaaa 178
|||||||||||| |||||| ||| |||| |||||||||||| | || |||||||||||||
Sbjct 140 TGATCGCATGAACCATAGATATTCGTTTCCTTCTCCTCCTTCCCTT-TCTTCTTATCAAA 198
Query 179 attcacatatctcttcatcttctGTTGGGTTTAATAATTCACATATGACTTATCATATGC 238
|||||||| |||||||||||| |||||| |||||||||||||||||| | | |
Sbjct 199 ATTCACATGTCTCTTCATCTTATGTTGGATTTAATAATTCACATATG----A-C--A--- 248
Query 239 TGAAAAGAAATTATGATTCTGTTTCCCGTGCTGATTATTTCTCTACTAAAGATCATTCTC 298
|||||||||| ||||||| |||| ||||| |||||||| |||||||||| | | ||
Sbjct 249 --AAAAGAAATTTTGATTCTATTTCTCGTGCCAATTATTTCCCTACTAAAGAGAAATATC 306
Query 299 ATTTTACTCAAGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTGTTCCTT 358
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 307 ATTTTACTCAAGTATCTTTCACTCAAACCATCATAAATAGGTATACAACTATTGTTCCTT 366
Query 359 CCAATATATTTGACACTGTTCACTATGATATTGGTCGTGTCAAACGTGCCATAGATTTTA 418
||||| ||||| ||| ||| |||||||| |||| ||||||||||||||||| |||| ||
Sbjct 367 CCAATCTATTTAACAATGTCCACTATGACATTGAACGTGTCAAACGTGCCATGGATTCTA 426
Query 419 GAAATATTTGGAATCCTAAATCTCATCTTCCaaaaaaaT-TTAATAGGCAATGCGAGATT 477
||||| |||||| |||| ||||||||||||||| | || ||| || | || ||||
Sbjct 427 CAAATACTTGGAACCCTATATCTCATCTTCCAAAGTT-TCTTGATAACCATTCCGGGATT 485
Query 478 TTGAATCCTACCCCTCTTAATATCGTCTTTCCGCACCAGGATTCAGCTGATCGTCAACAT 537
||||| ||||||||||| |||||||| |||||||| | |||| | |||||||||||||
Sbjct 486 TTGAAGCCTACCCCTCTAAATATCGTGTTTCCGCAGGAAGATTTTGTTGATCGTCAACAT 545
Query 538 TTAGACATTATTTTCTCGTCATCAAAGCACAACCATGTTTTC-CAAGATGGTCGATCCTT 596
|||||||| ||| || ||||||||||||||||| ||||| | |||| |||||||||| |
Sbjct 546 TTAGACATGGTTTCCTTGTCATCAAAGCACAACCGTGTTT-CGCAAGCTGGTCGATCCCT 604
Query 597 GAAGAAAATTTCCGAACCAACCAATCTGTTTGAAAAA-TCTAATTCTTAT---GATTCTC 652
|||||||||| || ||||||||||| | ||||||||| | | ||||||| ||||||
Sbjct 605 GAAGAAAATTCCCAAACCAACCAATATTTTTGAAAAAAT-TGGTTCTTATATAGATTCTG 663
Query 653 AAGAAGATGAGAAAA-TCGATG-CTTATCAATATGATGGTCGTACACATAGTCTACCGTA 710
|| |||||||||||| | |||| | |||| |||||||||||||||||||| ||||||||
Sbjct 664 AAAAAGATGAGAAAAAT-GATGACG-ATCATTATGATGGTCGTACACATAGCCTACCGTA 721
Query 711 TACGAAATACGGTCCATATACATGTCCCAGGTGTAACGGTGTGTTTGATACTTCTCAAAA 770
|| ||||| ||||| ||||||||||| | ||||| |||||||| || || ||||||||
Sbjct 722 TAAGAAATTTGGTCCCTATACATGTCCTAAATGTAATGGTGTGTTGGACACCTCTCAAAA 781
Query 771 ATTTGCTGCACATATGTTATCTCACTACAATAATGAGACGGACAAAGAAAGAGACCAAAG 830
||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||
Sbjct 782 ATTTGCTGCACATATGTTATCTCACTATAATAGTGAGACGAACAAAGAAAGAGATCAAAG 841
Query 831 ATTTCGTGCAAGAAATAAAAAACGATATCGTAAGTTTATGGACAGTCTTAAAATATCAAA 890
| | |||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||||
Sbjct 842 ACTGCGTGCAAGAAATAAAAAAAGATATCGTAAGTTCATGGAAAGTCTCAAAAGATCAAA 901
Query 891 ACAGAAGATATGA 903
|||||||||||||
Sbjct 902 ACAGAAGATATGA 914
> Ahg948883 jgi|Araly1|948883|scaffold_800770.1
Length=881
Score = 579 bits (313), Expect = 2e-164
Identities = 646/802 (81%), Gaps = 42/802 (5%)
Strand=Plus/Plus
Query 122 ATCGCATGAATCATAG-AGATTTGTTttcttctcctcc-ttctttctcttcttatcaaaa 179
|||||||||| ||| | |||||||||| ||||||||| | |||| ||||||||||||||
Sbjct 73 ATCGCATGAACCAT-GAAGATTTGTTTGATTCTCCTCCATCCTTT-TCTTCTTATCAAAA 130
Query 180 ttcacatatctcttcatcttctGTTGGGTTTAATAATTCACATATG-ACTTATCATATGC 238
||||||| |||||||| |||| || |||| |||||||||||| || |||||||||
Sbjct 131 TTCACATGCCTCTTCATTTTCTTTTCAAATTAACAATTCACATATGAAC-TATCATATGA 189
Query 239 TGAAAAGAAA-TTATGATTCTGTTTCCCGTGCTGATTATTTCTCTACT-AAAGATCATTC 296
||| ||||| || ||||||| |||| |||| | ||||| |||| | ||| || ||||
Sbjct 190 TGAGGAGAAACTT-TGATTCTTTTTCTGGTGCCAAATATTTGTCTATTCAAA-ATAATTC 247
Query 297 TCATTTTACTCAAGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTGTTCC 356
|||| |||||||| | ||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct 248 TCATATTACTCAAATTTCTTTTACTGAAACCATCACAAATAGGTATACTACTATTGTTCC 307
Query 357 TTCCAATATATTTGACACTGTT-C-ACTATGATATTGGTCGTGTCAAACGTGCCATAGAT 414
| |||||| | |||| | | || | || |||| ||| |||||||||||| |||| |||
Sbjct 308 TACCAATACACTTGATAAT-TTCCAAC-ATGAAATTAAACGTGTCAAACGTTCCATGGAT 365
Query 415 T-T--TAGAAATATTTGGAATCCTAAATCTCATCTTCCaaaaaaaTTT-AATAGGCAATG 470
| | || ||||||||||||||| |||| ||| | |||| ||| ||| || ||
Sbjct 366 TCTAATACTAATATTTGGAATCCTGTATCTTATCCT-CAAATTTTTTTCGATAATCAGTG 424
Query 471 CGAGATTTTGAATCCTACCCCTCTTAATATCGTCTT-TCCGCACCAGGATTCAGCTGATC 529
||| |||||||||||||| ||||||| | || | || ||||| ||| |||| |||| ||
Sbjct 425 CGAAATTTTGAATCCTACACCTCTTAGTGTCAT-TTATCCGCGCCAACATTCTGCTGCTC 483
Query 530 GTCAACATTTAGACATTATT-TT-CTCGT-CATCAAAGCACAACCATGTTTTC-CAAGAT 585
||| |||| || ||| || || || | |||||||| ||||||| || | || | |
Sbjct 484 TTCATCATTCAG--ATTTTTCTTCCT-TTACATCAAAGTGTAACCATG-TTCCTCACGCT 539
Query 586 GGTCGATCCTT-GAAGAAAATTTCCGAACCAACCAATCTGTTTGAAA-AATCTAATTCTT 643
|||||| ||| ||||||||||||| ||||||| ||||| ||||||| || ||| || ||
Sbjct 540 AGTCGAT-CTTCGAAGAAAATTTCCAAACCAACAAATCTTTTTGAAAGAA-CTACTTATT 597
Query 644 ATG---ATTCTCAAGAAGATGAGAAAA-TCGATGCTTATCAATATGATGGTCGTACACAT 699
||| ||||| ||||||||||||||| | |||| | ||||||||||||| |||||||||
Sbjct 598 ATGTTCATTCTGAAGAAGATGAGAAAAGT-GATGATAATCAATATGATGGACGTACACAT 656
Query 700 AGTCTACCGTATACGAAATACGGTCCATATACATGTCCCAGGTGTAACGGTGTGTTTGAT 759
||| |||| ||| |||||| ||||||||||| ||||||| ||| || |||||||||||
Sbjct 657 AGTATACCATATGTGAAATATGGTCCATATACGTGTCCCAAGTGCAATGGTGTGTTTGAC 716
Query 760 ACTTCTCAAAAATTTGCTGCACATATGTTATCTCACTACAATAATGAGACGGACAAAGAA 819
|||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 717 ACTTCTCAAAGATTTGCTGCACATATGTTATCTCACTACAACAGTGAGACGAACAAAGAA 776
Query 820 AGAGACCAA-AGATTTCGTGCAAGAAATAAAA-AACGATATCGTAAGTTTATGGACAGTC 877
| || | |||||||||||||||||||||| || || ||||||| | |||| | |||
Sbjct 777 AAAG-CTTTGAGATTTCGTGCAAGAAATAAAAGAAA-ATTTCGTAAGCTCATGGCCGGTC 834
Query 878 TTAAAATATCAAAACAGAAGAT 899
|||||||||||||||| |||
Sbjct 835 AGAAAATATCAAAACAGAGGAT 856
> Ahg931310 jgi|Araly1|931310|scaffold_303767.1
Length=1033
Score = 448 bits (242), Expect = 5e-125
Identities = 695/903 (77%), Gaps = 74/903 (8%)
Strand=Plus/Plus
Query 1 ATGTCTTCCATCCCAAATAGGTTCAATATTTATGGTGGTGATACCACAAACCATCGT-GA 59
|||||||| || ||||||| ||||||| || || ||| |||| || ||| ||||| |
Sbjct 21 ATGTCTTCTATTCCAAATAAGTTCAATCTTCATTGTGATGAT---ACTAACAATCGTGGT 77
Query 60 ATCGCTTCCCATCGAAATGAATCACAACTCTC-GAATGGTTCGATCCATGTTCATTACAT 118
| | ||| | | |||||||||| || || | ||| |||| ||| ||||||||||| |
Sbjct 78 TTTTCCTCCAAAC-AAATGAATCAAAATTC-CAAAATAGTTCAATCGATGTTCATTACCT 135
Query 119 CTGATCGCATGAATCATAGAGATTTGTTttcttc-tcctccttctttctcttcttatcaa 177
| |||| || || ||| | ||||||||||| || | |||||||||| ||| || ||||
Sbjct 136 CGGATCACACAAACCATGGTGATTTGTTTTCCTCAT-CTCCTTCTTTAACTTTTTTTCAA 194
Query 178 aattcacatatctcttcatcttc-tGTTGGGTTTAATAATTCACATATGACTTATCATAT 236
||||||||| | ||||||||||| | |||| ||||| ||||||||| ||| |||| ||
Sbjct 195 AATTCACATGTTTCTTCATCTTCAT-TTGGATTTAAAAATTCACATGTGAAAAATCAAAT 253
Query 237 GCTGAAAAGAAATTATGATTCTGTTTCCCGTG-CTGATTA-TTTCTCTACTAAAGATC-A 293
| ||| ||||| || | |||| ||| | |||| |||| ||| |||| | | |
Sbjct 254 GATGAGGAGAAA-CAT-A----ATTTCTGGTGAC-AATTATTTTC-CTA-TAAAAAACAA 304
Query 294 TTCTCATTTTACTCA-AGTATCTTTCACTCAAACCATCACAAATAAGTATACTACTATTG 352
| |||||||||| || ||| |||||||| |||| ||| ||||||| |||||| ||||||
Sbjct 305 TCCTCATTTTAC-CAGAGTTTCTTTCACACAAAGCATTACAAATAGGTATACCGCTATTG 363
Query 353 TTCCTTCCAATATATTTGACACTGTTCACTATGATATTGGTCGTGTCAAACGTGCCATAG 412
||||| | |||| | |||||| ||| || ||||||||| ||||||||||||||||| |
Sbjct 364 TTCCTACTAATACACTTGACATTGTACAATATGATATTCAACGTGTCAAACGTGCCAT-G 422
Query 413 -ATT-TTAGA--AATATTTGGAATCCTAAATCTCATCTTCCaaaaaaaTTTAATAGGCAA 468
||| | | ||||||||||||||||||| | || |||||| | ||| ||| ||
Sbjct 423 TATTCCAAAACTAATATTTGGAATCCTAAATTTTTTCCTCCAAATATTTTTGATAAACAG 482
Query 469 TGCGAGA-TTTTGAATCCTACCCCTCTTAATATCGTCT-TTCCGCACCAGGATTCAGC-T 525
|| || | |||||||||||| ||||||||| || | | |||||| || ||||| || |
Sbjct 483 TGTGA-ACTTTTGAATCCTAAACCTCTTAATGTCAT-TGTTCCGCGTCAAGATTCTGCAT 540
Query 526 GA-TCGTCAACATTTAGACATTATTTTC-TCGTCATC---A-A-AGC-ACAACC-ATGT- 575
| || |||||||||||||| | ||||| | |||||| | | | | |||||| | ||
Sbjct 541 -ATTC-TCAACATTTAGACA-TGTTTTCATTGTCATCAAAACACAACTACAACCAACGTG 597
Query 576 TTTC-CAAGATGG-TCGATCCTTGAAGAAAAT-TTCCG-AACCAACCAA-TCTGTTT-GA 629
|| | ||| |||| || | ||||||||||| || | |||||||||| | | ||| ||
Sbjct 598 TTCCTCAATATGGTTC-TTTTTTGAAGAAAATCTT--GAAACCAACCAAGT-TTTTTGGA 653
Query 630 A-AAAT-CTAATTCTTA-TGATTCTCAAGAAGATGAGAAAA-TCGATGCTTATCAATATG 685
| || | || ||| || ||| ||| ||||| ||||||||| | | | | |||| ||||
Sbjct 654 ACAAGTACTGATT-ATATTGAGTCTGAAGAAAATGAGAAAAGT-AACGATGATCAGTATG 711
Query 686 ATGGTCGTACACATAGTCTACCGTAT-ACGAAATACGGTCCATATACATGTCCCAGGTGT 744
||||||| |||||||||||||| ||| | ||||| ||||||||||||||||||| |||
Sbjct 712 ATGGTCGGACACATAGTCTACCATATGA-AAAATATGGTCCATATACATGTCCCAAGTGC 770
Query 745 AACGGTGTGTTTGATACTTCTCAAAAATTTGCTGCACATATGTTATCTCACTACAATAAT 804
|| || || || ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 771 AATGGCGTATTCGATACTTCTCAAAAATTTGCTGCACATATGTCATCTCACTACAAGAAT 830
Query 805 GAGACG-GACAAAGAAAGAGACCAAAGATTTCGTGCAA-GAA-ATAAA-AAACGATATCG 860
|| ||| | | |||||||||| || ||| ||||||||| ||| | ||| ||| |||| |
Sbjct 831 GAAACGAG-CGAAGAAAGAGAACATAGACTTCGTGCAAAGAACA-AAAGAAA--ATATTG 886
Query 861 TAA 863
|||
Sbjct 887 TAA 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5