BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42660.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331135 jgi|Araly1|331135|fgenesh1_pm.C_scaffold_8000478 2135 0.0
Ahg932850 jgi|Araly1|932850|scaffold_400838.1 464 9e-130
Ahg888853 jgi|Araly1|888853|Al_scaffold_0007_839 438 5e-122
> Ahg331135 jgi|Araly1|331135|fgenesh1_pm.C_scaffold_8000478
Length=1947
Score = 2135 bits (1156), Expect = 0.0
Identities = 1311/1386 (95%), Gaps = 9/1386 (1%)
Strand=Plus/Plus
Query 182 ATGTTC-A-A-CAACAACAGTGTCTCGATCTCAGTATCTGACGACGAATCTAACGATTTG 238
|||||| | | ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTTCAACACCAACAACAGTGTCTCAATCTCAGTATCTGACGACGAATCCAACGATTTG 60
Query 239 AATCGGATCCGAGCTCGTACCCGACGAAAGCGGAAGAAAGTGAGTCACAGAACCAGCTAC 298
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 61 AATCGGATCCGAGCTTGAACCCGACGAAAGCGGAAGAAATTGAGTCACAGAACCACCTAC 120
Query 299 GAGCTTCCTCGTCATGTTCTAAGGCTTTTTGTGAGATACTGGGTCGTCTTAGTTTTTCTT 358
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 GAGCTTCCTCGTCACGTTCTAAGGCTTTTCGTGAGATACTGGGTCGTATTAGTTTTTCTT 180
Query 359 CTCGCTGTTGGGTTGCTTGTATTT-GAATCAACGAGGA-TCGGATTCAAATCTAGTGACT 416
||||| ||| ||||||||| ||| ||||||||||||| | ||| |||||||||||| |
Sbjct 181 CTCGCAGTTATGTTGCTTGT-TTTCGAATCAACGAGGATTGGGA-TCAAATCTAGTGTGT 238
Query 417 TGAAGAAACCAGATTTGAATGGGAAAGAGAGTCCTAGTAAGAAAAATGAAGGAAATTTGA 476
||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TGAAGAATCCAGATTCGAGTGGAAAAGAGAGTCCTAGTAAGAAAAATGAAGGAAATTTGA 298
Query 477 ATCGATTGGATCCTACTACCAAAGTTATTGGTGGTGTTAGACAACGTTGTTTGAAGCTTT 536
| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 299 ACCGATTGGATCCAACTACGAAGGTTATTGGTGGTGTTAGACAACGTTGTTTGAAGCTTT 358
Query 537 TACCACCTGAGGAGCTTGAGCATCTTGATATCTTAGAGCGTAAAGATTCAGGCTCTCCGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 TACCACCTGAGGAGCTTGAGCATCTTGATATCTTAGAGCGTAAAGATTCAGGCACTCCGG 418
Query 597 TTAAGAGAGTTGTGTATCTAACTGATACGGATGTGTCGGTGGGAGAAATGAGAGGTGTTC 656
||||||||||||||||||| |||||| || |||||||| |||| ||||||| || |||||
Sbjct 419 TTAAGAGAGTTGTGTATCTTACTGATGCGAATGTGTCGATGGGTGAAATGAAAGCTGTTC 478
Query 657 GTGGTAATGGGACGCGGTTTAATTTATTCACGGGGAACCAGACTTTTGCTGAGAGAGAAA 716
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 479 GTGGTAATGGGACGCGGTTTAATTTATTCACGGGGAATCAGACTTTTGCTGAGAGAGAGA 538
Query 717 ATAGTTTTCAGGTAAGGGAAACAGTTTCTTTGCATTGTGGGTTTTTCAATGAAAATGGGG 776
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 539 ATAGTTTTCAGGTAAGGGAAACAGTTTCTTTGCATTGTGGATTTTTTAATGAAAATGGGG 598
Query 777 GATTTAGGATTTCGGATAAGGATAAGAAGTTTATGAC-ATCATGTGAAGTAGTGGTCTCG 835
||||||||||||||||||||||||||| ||||||| | | |||||||||| || ||||||
Sbjct 599 GATTTAGGATTTCGGATAAGGATAAGAGGTTTATG-CAAACATGTGAAGTTGTAGTCTCG 657
Query 836 ACGTGTGCGTTTGGTGGTGGAGATAACCTTTATGAACCTATTGGAATGTCTAAGACATCA 895
|| ||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||
Sbjct 658 ACATGTGCGTTTGGTGGTGGTGATAATCTTTATGAACCTCTTGGAATGTCTAAGGCATCA 717
Query 896 AGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACAACACAAGAAGCA 955
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 AGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCAACACAAGAAGCA 777
Query 956 GAGGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAAAG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GAGGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAAAG 837
Query 1016 GATCTTCCTTTTACAGACCAAAGGCTTAATGGGAAGATCCCAAAGATGTTGGCCCATCGC 1075
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GATCTGCCTTTTACAGACCAAAGGCTTAATGGGAAGATCCCAAAGATGTTGGCCCATCGC 897
Query 1076 CTTTTCCCAGATGCCAAGTACTCGATTTGGGTAGACTCAAAATCCCAGTTTAGAAGAGAC 1135
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 898 CTTTTCCCAGATGCAAAGTATTCGATTTGGGTAGACTCAAAGTCCCAGTTTAGAAGAGAC 957
Query 1136 CCACTTGGTGTACTAGATGCTCTTCTTTGGCGAACAAACTCGGTGCTTGCAATTTCAGAA 1195
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 958 CCACTTGGTGTACTAGATGCTCTTCTTTGGCGAACAAATTCAGTGCTTGCAATTTCAGAA 1017
Query 1196 CATGGAGCTCGAAGCAGTGTATACGACGAGGCAAACGCTGTCATCAAGAAACACAAAGCT 1255
||||||||||||||||| |||||||| |||||||| |||||| | || ||||||||||||
Sbjct 1018 CATGGAGCTCGAAGCAGCGTATACGATGAGGCAAAAGCTGTCGTGAACAAACACAAAGCT 1077
Query 1256 ACACCCGAAGAAGTTGAAGTGCAGATAAATCAATACCGACATGACAAATTACCCGAAGAT 1315
||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1078 ACACCTGAAGAAGTTGAAGTCCAAATAAATCAATACCGACATGACAAATTACCTGAAGAT 1137
Query 1316 AAAAGATTCAACGGGAAAAAAGCTTTATCTGAAGCCTCTGTGATTGTAAGGGAACACACT 1375
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1138 AAAAGATTCAACGGGAAAAAAGCTTTATCCGAAGCCTCTGTGATTGTGAGGGAACACACT 1197
Query 1376 CCATTGACAAATCTATTCATGTGCCTCTGGTTCAATGAAGTTGTCCGCTTCACTTCGCGT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCATTGACAAATCTATTCATGTGCCTCTGGTTCAATGAAGTTGTCCGCTTCACTTCGCGT 1257
Query 1436 GATCAATTGAGTTTCCCATACGTTCTTTGGCGTTTGAAAGTTCTCAAGAACATCAACATG 1495
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GATCAATTGAGTTTCCCATACGTTCTTTGGCGATTGAAAGTTCTCAAGAACATCAACATG 1317
Query 1496 TTCCCTGTCTGTACACGTAAAGATCTCGTCAATAGCATAGGCCATGTACGCAAGGCTAAA 1555
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTCCCTGTGTGTACACGTAAAGATCTCGTCAATAGCATAGGCCATGTACGCAAGGCTAAA 1377
Query 1556 CCGTTA 1561
|| |||
Sbjct 1378 CCATTA 1383
> Ahg932850 jgi|Araly1|932850|scaffold_400838.1
Length=388
Score = 464 bits (251), Expect = 9e-130
Identities = 305/330 (92%), Gaps = 7/330 (2%)
Strand=Plus/Plus
Query 720 GTTT-TCA-GGTAAGGGAAACAGTTTCTTTGCATTGTGGGTTTTTCAATGAAAATGGGGG 777
|||| ||| |||||||||||||||||| ||||||||||| ||||| |||| ||||||||
Sbjct 14 GTTTGTCATGGTAAGGGAAACAGTTTCGTTGCATTGTGGATTTTTTAATGCTAATGGGGG 73
Query 778 ATTTAGGATTTCGGATAAGGATAAGAAGTTTATGAC-ATCATGTGAAGTAGTGGTCTCGA 836
||||||||||| |||||||||||||| ||||||| | | |||||||||| || |||||||
Sbjct 74 ATTTAGGATTTTGGATAAGGATAAGAGGTTTATG-CAAACATGTGAAGTTGTAGTCTCGA 132
Query 837 CGTGTGCGTTTGGTGGTGGAGAT--AACCTTTATGAACCTATTGGAATGTCTAAGACATC 894
||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 133 CGTGTGCTTTTGGTGGTGGAGATAAAATCTTTATGAACCTATTGGAATGTCTAAGGCATC 192
Query 895 AAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACAACACAAGAAGC 954
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 193 AAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCAACACAAGAAGC 252
Query 955 AGAGGG-TCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTATTGTGATTGTAA 1013
|||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 253 AGAGGGGTCATAAGATCAATGAGAATGATCACACTGGAAAGTGGCGTATAGTGATTGTAA 312
Query 1014 AGGATCTTCCTTTTACAGACCAAAGGCTTA 1043
||||||| ||||||||||||||||||||||
Sbjct 313 AGGATCTGCCTTTTACAGACCAAAGGCTTA 342
> Ahg888853 jgi|Araly1|888853|Al_scaffold_0007_839
Length=423
Score = 438 bits (237), Expect = 5e-122
Identities = 308/341 (90%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 709 GAGAGAA-AATAGTTTTCAGGTAAGGGAAACAGTTTCT-TTGCATTGTGGGTTTTTCAAT 766
||| ||| || ||||| | ||||||||||||||||| | ||||||||||| ||||| |||
Sbjct 60 GAG-GAATAAGAGTTTCCCGGTAAGGGAAACAGTTT-TGTTGCATTGTGGATTTTTTAAT 117
Query 767 GAAAATGGGGGATTTAGGATTTCGGATAAGGATAAGAAGTTTATGAC-ATCATGTGAAGT 825
| |||||||||||| |||||| |||||||||||||| ||||||| | | ||||||||||
Sbjct 118 GCTAATGGGGGATTTTGGATTTTGGATAAGGATAAGAGGTTTATG-CAAACATGTGAAGT 176
Query 826 AGTGGTCTCGACGTGTGCGTTTGGTGGTGGAGAT--AACCTTTATGAACCTATTGGAATG 883
|| |||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 177 TGTAGTCTCGACGTGTGCTTTTGGTGGTGGAGATAAAATCTTTATGAACCTATTGGAATG 236
Query 884 TCTAAGACATCAAGTCAAAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTACA 943
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 TCTAAGGCATCAAGTCACAAGGTTTGCTATGTTGCGTTTTGGGATGAAGTTACTCTTGCA 296
Query 944 ACACAAGAAGCAGA-GGGTCATAAGATCGATGAGAATGATCACATTGGAAAGTGGCGTAT 1002
| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 ATACAAGAAGCAGAGGGGTCATAAGATCAATGAGAATGATCACATTGGAAAGTGGCGTAT 356
Query 1003 TGTGATTGTAAAGGATCTTCCTTTTACAGACCAAAGGCTTA 1043
||||||||||||||| | || |||||||||||||||||||
Sbjct 357 AGTGATTGTAAAGGATATGCCGTTTACAGACCAAAGGCTTA 397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5