BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42670.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916060 jgi|Araly1|916060|Al_scaffold_0008_811 1014 0.0
> Ahg916060 jgi|Araly1|916060|Al_scaffold_0008_811
Length=825
Score = 1014 bits (549), Expect = 0.0
Identities = 740/830 (89%), Gaps = 22/830 (3%)
Strand=Plus/Plus
Query 73 ATGAGTGAAATGAATCTACCATTTGAAGTTGGTCAAACTGTAGAATTGAA-ATCTTTTGA 131
|||| | |||| ||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1 ATGACTCAAATCAATCTACCATTTGAAGTTGGTCAAACTGTAGAATT-AAGATCTTTT-A 58
Query 132 -ATTGGGTTTTCGTGGTGCTTGGTTTCGTTGCAAGAAAAGGAAAGCATTATTCTTTGATG 190
|| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 59 TATCGGGTTATCGTGGTGCTTGGTTTCGATGCAAGAAAAGGAGAGCATTATTCTATGATG 118
Query 191 TTGAGTATATTGATTATCCAGGAGAAG-GGATACATTCAACAAAAGTATTTCAACAACTC 249
| |||||| |||||||||| |||| || | |||||| |||||||||||||||||||||||
Sbjct 119 TGGAGTATCTTGATTATCCCGGAG-AGAGTATACATACAACAAAAGTATTTCAACAACTC 177
Query 250 GAAGGCGGAAACGAGAAATGCTTGATGATTCGACCTGTATATCCGCCACAATGTCGTGAA 309
||||| || | |||||| | | |||||||||||||||||||| | |||||| | ||||
Sbjct 178 GAAGGTGGGAGTGAGAAACACCTAATGATTCGACCTGTATATCCACGACAATGCCATGAA 237
Query 310 AATGAAG----T--C---GA---TGGCGGTCTAGAAGAAGCT-CTTGTTGTTCATGGTTC 356
||||||| | | || ||| ||||||||||||||| | ||||||||||| |
Sbjct 238 AATGAAGTCCTTAACAAGGAGGGTGGTGGTCTAGAAGAAGCTGC-TGTTGTTCATGATGA 296
Query 357 TTGGAAGGTTGGTGATTTGGTTGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACTGT 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 297 TTGGAAGGTTGGTGATTTGGTCGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACGGT 356
Query 417 TCTGGAAGTGAAAGAAAATGAATCAGTACAGATTGAATTGTTGGCTCCACCATATGGCGA 476
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 357 TCTGGAAGTGAAAGAAAATGGATCAGTACAGATTGAATTGTTGGCTCCACCACATGGCGA 416
Query 477 AGGGAGTAGCTATGAGGCTCA-GTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 535
|||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGGGAGTATCTATGACGC-CATGTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 475
Query 536 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAAAAGAGGCAATGTGCTAAGCTAA 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAGAAGAGGCAATGTGCTAAGCTAA 535
Query 596 TGAAACAGTTAAATGAAGATCAAGTGAGTGAAGCTGAATCTATGgaagaagaaaagcaga 655
||||||| || |||||||||||||||| ||| || ||||| |||||||||||| ||||||
Sbjct 536 TGAAACATTTGAATGAAGATCAAGTGAATGAGGCCGAATCAATGGAAGAAGAAGAGCAGA 595
Query 656 gaggagccgaacctaaagaagaagaaaagcagagaccgacagaaaagTTGAAAAGCGATG 715
| ||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||| ||||
Sbjct 596 GTGGAGCTGAACCTAGAGAGGAAGAAAAGCAGAGACCCACAGAGAAGTTGAAAAAAGATG 655
Query 716 AAGCTCTTCAGTTGAACATCATGGATTCAGAGTCTATCGAAGCTGCTGTCTTGGACTTGG 775
|||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 656 GAGCTCTTCGGTTGAACATCATGGAATCAGAGTCTGTCGAAGCTGCTGTCTTGGACTTGG 715
Query 776 AAGAGATGATTGTTCGTTTCGAGTGGCTGAAAGACATCTTAACTCCTGATTCTTCGGaaa 835
||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||||| ||||
Sbjct 716 AAGAGCTGATTGTTCGTTTCGAGTGGATGAAAGGCATTTTAGCTCCTGATTCTTCAGAAA 775
Query 836 aaaaTTCCTGGATATACGAGGATTATCATCCATCCTCCTCAAGAATGTGA 885
|| |||||||||||||||| ||| | |||||||||||||||||| |||
Sbjct 776 AATCTTCCTGGATATACGAGCCTTACCGTCCATCCTCCTCAAGAATCTGA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5