BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42680.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494768 jgi|Araly1|494768|fgenesh2_kg.8__584__AT5G42680.1 1170 0.0
> Ahg494768 jgi|Araly1|494768|fgenesh2_kg.8__584__AT5G42680.1
Length=784
Score = 1170 bits (633), Expect = 0.0
Identities = 737/787 (94%), Gaps = 7/787 (1%)
Strand=Plus/Plus
Query 1 GAACAACAAGAAAAGGTGAGTAGAAGGAAAAACAAGTAAAAACTATGCCGATCCGATCTA 60
|||||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1 GAACAACAAGAATAGGTGAATAGAAAGAAAAACAAGTTAAAACTATGCCGATCCGATCTA 60
Query 61 ACCCCTTCTTCAATATGGATAGCTCGGCCTTGCTCTCGCTCTTGCGGCACACGGGTACCT 120
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||| | ||
Sbjct 61 GCCCCTTCTTCAATATGGATAGCTCGGCCGTGCTCTCGCTCTTGAGGCATACGGGCAGCT 120
Query 121 CCATGGACTCTAAAAGC-TCGAAGAAATCTTCTGGAAGCATCGGTGGTGGGGTGCTTAAA 179
| ||||| ||| ||| | ||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct 121 CTATGGATTCT-AAACCTTCGAAGAAAACTTCTGGAAGCATAGGTGGCGGGGTGCTCAAA 179
Query 180 ATGTTCAAGCTCATACCAATGCTATCATCTGGTTGCAAGATGGTGAACTTGTTGAGTCGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 ATGTTCAAGCTCATACCAATGCTATCATCTGGTTGCAAGATGGTGAACTTGTTAAGTCGA 239
Query 240 GGGCATCGAAGACCCTTACTTAAAGACTACGCAACAACGGGAACAATATTCGGGTTTCGC 299
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 240 GGGCATCGAAGACCCTTACTTAAAGACTACGCAACAACGGGGACGATATTCGGGTTTCGC 299
Query 300 AAAGGAAGAGTCTTTCTTGCTATACAAGAAGATCCTCATTGCCTGCCAATTTTCATCATC 359
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 300 AAAGGAAGAGTCTTTCTTGCAATACAAGAAGATCCTCATTGCTTGCCAATGTTCATCATC 359
Query 360 GAGCTCCCGATGCTGACTTCGGCGCTGCAAAAGGAGATGGCCTCGGAAACTGTTAGGATT 419
|||||||||||||||||||||||||| || |||||||||||||| || ||||| ||||||
Sbjct 360 GAGCTCCCGATGCTGACTTCGGCGCTTCAGAAGGAGATGGCCTCAGAGACTGTGAGGATT 419
Query 420 GCTTTGGAAAGCGAGAC-AAAGACGTCGAGGAAGAAGGTGTTGGAGGAGTACGTGTGGGG 478
||||| ||||||||||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct 420 GCTTTAGAAAGCGAGACCAAA-ACATCGAGGAAGAAGGTGTTGGAGGAGTATGTGTGGGG 478
Query 479 GATTTACTGTAACGGACGGAAAATCGGGTATTCGATAAGGAG-AAAGAACATGAGTGAGG 537
||| ||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 479 GATCTACTGTAACGGGCGGAAAATCGGGTATTCGATACGGAGGAAA-AACATGAGTGAGG 537
Query 538 AGGAGATGTATGTGATTGATGCATTGAGAGGTGTTTCCATGGGGGCTGGAGTTTTACCAT 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 538 AGGAGATGTATGTGATTGATGCATTGAGAGGTGTTTCAATGGGGGCTGGAGTTTTACCAT 597
Query 598 GTAAGAACCAATATGATCAAGAGACAGAAGGAGAAATGACTTACATGAGAGCTCGATTCG 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 598 GTAAGAACCAATATGATCAAGAAACAGAAGGAGAAATGACTTACATGAGAGCTCGATTCG 657
Query 658 ATAGAGTGATTGGCTCTAAAGACTCTGAAGCATTGTATATGATCAACCCTGAAGGTAGTG 717
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 658 ATAGAGTGATTGGTTCTAAGGATTCTGAAGCATTGTATATGATCAACCCTGAAGGTAGTG 717
Query 718 GTCAGGGCACAGAGCTTAGTATTTACTTTCTCAGGTCTCATTAACTGTT-GTTACACTTT 776
||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 718 GTCAGGGCACAGAACTTAGTATCTATTTTCTCAGGTCTCATTAACTGTTTGTTACACTTT 777
Query 777 TATTTTT 783
| |||||
Sbjct 778 TCTTTTT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5