BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42700.1
Length=812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331130 jgi|Araly1|331130|fgenesh1_pm.C_scaffold_8000473 915 0.0
> Ahg331130 jgi|Araly1|331130|fgenesh1_pm.C_scaffold_8000473
Length=636
Score = 915 bits (495), Expect = 0.0
Identities = 593/640 (93%), Gaps = 8/640 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGTCGAAAAACAAACAAAGTACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAAC 60
||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTCTCAAAGCAATCAAAATACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAAC 60
Query 61 AAGAAACGAATGGAAGCTCTGAATCTTCCAAAACTCTCTCAAATTCTCAATTCCACTTCC 120
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 61 AAGAAACGAATGGAAGCTCTCAATCTTCAAAAACTCTCTCAAAATCTCAATTCCACTTCC 120
Query 121 GTCAAGATTTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGAAGATGGTT 180
||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GTCAAAAATTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGCAGATGGTT 180
Query 181 GATGTTA-AACGAGTGCACATACAGAGAAGGGGAG-TGGGCAAGAA-GAGAGATTTATTG 237
|||| || ||||| | || |||| ||||||||| | || | || || ||||||||| | |
Sbjct 181 GATG-TACAACGAATTCAGATACGGAGAAGGGG-GTTGAGTAA-AAGGAGAGATTTGTCG 237
Query 238 AATCGAGTTTATGTTTCTGAAGAAATCAGAGATGAGGCCA-TTTCAAGAGCTAACAAATT 296
|||||||||||||||||||||||||||||||| |||| || ||||||||||| | |||||
Sbjct 238 AATCGAGTTTATGTTTCTGAAGAAATCAGAGAAGAGG-CATTTTCAAGAGCTGAGAAATT 296
Query 297 TCAGGATGAATTGGGGAGTGGTTATCCAAGTTTTGTGAAATCTATGCTTCAATCACATGT 356
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 297 CCAGGATGAATTGGGGAGTGGTCACCCAAGTTTTGTGAAATCTATGCTTCAATCACATGT 356
Query 357 TTCTGGTGGCTTCTGGCTGGGTCTTCCAGTGCAATTTTGCAAATCTCACCTCGGGTTACA 416
||||||||||||||||||||| |||||||| ||||| || | ||||||||||||| |||
Sbjct 357 TTCTGGTGGCTTCTGGCTGGGACTTCCAGTTCAATTCTGTAGATCTCACCTCGGGAAACA 416
Query 417 TGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGC 476
Query 477 GAGAAAGAATGGACTTAGTGGTGGATGGATGGGATTTGCGGTTGCTCACAATCTAGCATA 536
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 477 GAGAAAGAATGGACTTAGTGGTGGATGGATGGGGTTTGCTATTGCTCACAATCTAGCATA 536
Query 537 TGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGGTTTACATTACAAG 596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 TGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGATTTACATTACAAG 596
Query 597 AGTTGGAAGTTGTGGAGAAAGCTCCAAAGATATGAGCTGA 636
||||||||||| |||||||||||| |||||||||||||||
Sbjct 597 AGTTGGAAGTTCTGGAGAAAGCTCAAAAGATATGAGCTGA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30002735679
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5