BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42700.1 Length=812 Score E Sequences producing significant alignments: (Bits) Value Ahg331130 jgi|Araly1|331130|fgenesh1_pm.C_scaffold_8000473 915 0.0 > Ahg331130 jgi|Araly1|331130|fgenesh1_pm.C_scaffold_8000473 Length=636 Score = 915 bits (495), Expect = 0.0 Identities = 593/640 (93%), Gaps = 8/640 (1%) Strand=Plus/Plus Query 1 ATGGTGGTCGAAAAACAAACAAAGTACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAAC 60 ||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGGTCTCAAAGCAATCAAAATACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAAC 60 Query 61 AAGAAACGAATGGAAGCTCTGAATCTTCCAAAACTCTCTCAAATTCTCAATTCCACTTCC 120 |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| Sbjct 61 AAGAAACGAATGGAAGCTCTCAATCTTCAAAAACTCTCTCAAAATCTCAATTCCACTTCC 120 Query 121 GTCAAGATTTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGAAGATGGTT 180 ||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 121 GTCAAAAATTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGCAGATGGTT 180 Query 181 GATGTTA-AACGAGTGCACATACAGAGAAGGGGAG-TGGGCAAGAA-GAGAGATTTATTG 237 |||| || ||||| | || |||| ||||||||| | || | || || ||||||||| | | Sbjct 181 GATG-TACAACGAATTCAGATACGGAGAAGGGG-GTTGAGTAA-AAGGAGAGATTTGTCG 237 Query 238 AATCGAGTTTATGTTTCTGAAGAAATCAGAGATGAGGCCA-TTTCAAGAGCTAACAAATT 296 |||||||||||||||||||||||||||||||| |||| || ||||||||||| | ||||| Sbjct 238 AATCGAGTTTATGTTTCTGAAGAAATCAGAGAAGAGG-CATTTTCAAGAGCTGAGAAATT 296 Query 297 TCAGGATGAATTGGGGAGTGGTTATCCAAGTTTTGTGAAATCTATGCTTCAATCACATGT 356 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 297 CCAGGATGAATTGGGGAGTGGTCACCCAAGTTTTGTGAAATCTATGCTTCAATCACATGT 356 Query 357 TTCTGGTGGCTTCTGGCTGGGTCTTCCAGTGCAATTTTGCAAATCTCACCTCGGGTTACA 416 ||||||||||||||||||||| |||||||| ||||| || | ||||||||||||| ||| Sbjct 357 TTCTGGTGGCTTCTGGCTGGGACTTCCAGTTCAATTCTGTAGATCTCACCTCGGGAAACA 416 Query 417 TGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGC 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGC 476 Query 477 GAGAAAGAATGGACTTAGTGGTGGATGGATGGGATTTGCGGTTGCTCACAATCTAGCATA 536 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 477 GAGAAAGAATGGACTTAGTGGTGGATGGATGGGGTTTGCTATTGCTCACAATCTAGCATA 536 Query 537 TGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGGTTTACATTACAAG 596 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 537 TGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGATTTACATTACAAG 596 Query 597 AGTTGGAAGTTGTGGAGAAAGCTCCAAAGATATGAGCTGA 636 ||||||||||| |||||||||||| ||||||||||||||| Sbjct 597 AGTTGGAAGTTCTGGAGAAAGCTCAAAAGATATGAGCTGA 636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30002735679 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5