BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42710.1
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494763 jgi|Araly1|494763|fgenesh2_kg.8__579__AT5G42710.1 3421 0.0
> Ahg494763 jgi|Araly1|494763|fgenesh2_kg.8__579__AT5G42710.1
Length=2421
Score = 3421 bits (1852), Expect = 0.0
Identities = 2255/2445 (92%), Gaps = 45/2445 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTCGAATGGCGAGAAGAGAATGATGAAAAGGTCAGATTTTGCGCAGAAGTTGTTG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGTATGGCGAGAAGAGAATGATGAAAAGGTCAGATTTTGCGCAGAAGTTGTTG 60
Query 61 GATGATCTTCGTGTGAGGAAAGAACAGCTTTCAGGCTCTCAGAACTCCCTACAAAAAGAT 120
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GATGATCTTCGGGTGAGGAAAGAACAGCTTTCAGGCTCTCAGAACTCTCTACAAAAAGAT 120
Query 121 AAATATGCATATTCGAACAGAGGATTTAAGGGATCCAGAGCAAATTCTACAACATTTCAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AAATATGCATATTCGAACAGAGGATTTAAGGGATCCAGAGCAAAATCTACAACATTTCAA 180
Query 181 GATCTTACTAGCGGCT-GCATAGAGGCTTCAAATCAGTTAGTTCCTTATGG-AAAGGGCA 238
||||| |||||||| | ||||||| |||||||||| ||||||||||||| ||||| ||
Sbjct 181 GATCTCACTAGCGG-TGGCATAGAATTTTCAAATCAGATAGTTCCTTATGGAAAAGGCCA 239
Query 239 AGAGCATGGAGAAACTCGACTTGTCGAAAGCATTAGCATTTGCACTTGAAAATGCTGGAA 298
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 A-AGCATAGAGAAACTCGACTTGTCGAAAGCATTAGCATTTGCACTTGAAAACGCTGGAA 298
Query 299 AAGCTACAAGAGT-AGATCCTTCAGGGAGTGCCTCAATCATTAG-TTTCTTGCATGAAGT 356
||||||||||| | |||||||||||||| ||| ||||||||||| || ||| ||||| ||
Sbjct 299 AAGCTACAAGA-TCAGATCCTTCAGGGAATGCATCAATCATTAGATTCCTT-CATGATGT 356
Query 357 AGGAAGGAGATCTTTGGGAGAAACAAGAAGCAGTCAAGTTT-TTGTGCAACAACAACAAC 415
||||| ||||||||||||||||| ||||||||| ||| ||| | ||| |||||||||||
Sbjct 357 AGGAAAGAGATCTTTGGGAGAAAGAAGAAGCAGCCAA-TTTGTAGTGAAACAACAACAAG 415
Query 416 CTTCTTCAAGCAGTCCCATGATTCATGTTCATATCAAAGAGATTTCAAAGGGAGCTCAAA 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 CTTCTTCAAGCAGTCCCATGATTCATGTTCATATCAAAGAGATTTCAAAGGGGGCTCAAA 475
Query 476 AGCTGAATCAGATCATTAACGCATGTAGCAACGGCCTAAGCTTTCGTAAAGGAAGGTACT 535
| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 476 AACTAAATCAGATCATTAAAGCATGTAGCAACGGCCTCAGTTTTCGTAAAGGAAGGTACT 535
Query 536 CT-ATACAATGCGGGGAACAACTCATGGAAGGCGCCATTGAGTTGGAACAGTCTCTTCGT 594
| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 536 -TGATACAATGCGGGGAACAACTAATGGAAGGTGCCATTGAGTTGGAACAGTCTCTTCGT 594
Query 595 TTGCTTGTAGACATACAACAAGCATCTGAGTATACAAGCC-ACAAACGGAGGAAAAACAG 653
||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||
Sbjct 595 TTGCTTGTAGACATACAACAAGCTTCTGAGTATACAA-CCAACAAACAGAGGAAAAACAG 653
Query 654 AATCAAGCTGCTTGAAGAAAATGGTGATGATGATGAGGAGGAGGATGCTCATAATCAAAA 713
||||||||| ||||||| || |||||||| ||||| |||||||||||||| |||||
Sbjct 654 AATCAAGCTTCTTGAAG--AA----GATGATGAGGAGGAAGAGGATGCTCATAACCAAAA 707
Query 714 CTACCAAAAGATCAAACAAGTCGCAAAGGCGGATATCGAGATGAGACTATTGGCACTTAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 708 TTACCAAAAGATCAAACAAGTCGCAAAGGCGGATATCGAGATGAGACTATTGGCGCTTAA 767
Query 774 CTATCAAGAGGATAAGAACAACAAACATAGAAAGCAAACAAGTTA-TTGCGAAGATACCG 832
||||||||||||||| |||| |||||||||||||||||| || || ||||||||||||||
Sbjct 768 CTATCAAGAGGATAAAAACATCAAACATAGAAAGCAAACTAG-TAGTTGCGAAGATACCG 826
Query 833 -AGCAGAGATCAACGAAACCTCAGAAGGGAAGGATTCCGAGTGTTGTTGCAAAGTTGATG 891
|| ||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 827 AAG-AGAAATCAGTGAAACCTCAGAAAGGAAGGATTCCAAGTGTTGTTGCAAAGTTGATG 885
Query 892 GGACTAGGAGAGTTTCCACAAGATGAAAAAGAGACCAAC-ATAAAACATGATGGAGAGAA 950
|||||||||||||||||| |||||||||||||||||||| | |||| |||||| ||||||
Sbjct 886 GGACTAGGAGAGTTTCCAGAAGATGAAAAAGAGACCAACAACAAAA-ATGATGCAGAGAA 944
Query 951 TCTCACAAGGCGTAGAGTAATGGAAGCT-AGTGAAAATCTTGTTGAACTAAAGACACAAA 1009
||||||||||| |||||||||| ||| | |||||||||||||||||| | ||| ||||||
Sbjct 945 TCTCACAAGGCCTAGAGTAATGCAAG-TAAGTGAAAATCTTGTTGAATTGAAGGCACAAA 1003
Query 1010 GGAAGTCAACATCATTGGATTTAGTAATCCACAAGGAGACTCAAACCGCGAATGAGATAA 1069
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1004 GGAAGTCAACATCATTGGATTTAGTAATCCATAAGGAGACTCAAACCGCGAATGAGATAA 1063
Query 1070 ACTACAAAGCCAAGTCTCAGCA-AAAGGATAGAGAGAAGGATGATTCAAAGAGTAGAAAA 1128
||||||||||||||||||| || ||| |||||||||||| |||||||||| |||||||||
Sbjct 1064 ACTACAAAGCCAAGTCTCAACAGAAA-GATAGAGAGAAGAATGATTCAAACAGTAGAAAA 1122
Query 1129 AGAAGCAAGGCTTCATACAAGAAAGATGGAGAAACT-ACTACGAAAAATGTTATCAAAAG 1187
|||||||| | ||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 1123 AGAAGCAAAGTTTCATACAAGAAAGATGGAGAAA-TGACGACGAAAAATGTTATCAAAAG 1181
Query 1188 GAATCCAACTCCAACAGAAAATAAACATAAGGTTGTCGCGAGGAGTCAACAAAAGCCTTT 1247
||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1182 GAATCCATCTCCAACACAAAATAAGCCTAAGGTTGTCGCGAGGAGTCAACAAAAGCCAAT 1241
Query 1248 ACATAAACTTAGCAATAAGAAAGAGAAGTTGCAGCGAGAAAGACATCGA-GAAAATGGTG 1306
||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||| |
Sbjct 1242 ACATAAACTTAGCAATAAGAAAGAGAAGTTGCATCGAGAAAGACAGC-ACGAAAATGGCG 1300
Query 1307 TAACGACAAATCATTCA-CAAAAACCTTTGAGTTCAGAGGATTTACAAATGAAGGTACGA 1365
|||||| |||||||||| |||||| |||||||||| | |||| |||||| |||||||| |
Sbjct 1301 TAACGAAAAATCATTCACCAAAAA-CTTTGAGTTCTGTGGATATACAAACGAAGGTACCA 1359
Query 1366 CTCATAAACAAAGCTAAAGCTGTGAAGAAAAGCTTTT-CTCATGTTGAGGTAGCACAAAA 1424
|||| | |||||||||||||| ||||||||| |||| |||||||||| |||||||||||
Sbjct 1360 CTCACAGACAAAGCTAAAGCTATGAAGAAAA-TTTTTACTCATGTTGAAGTAGCACAAAA 1418
Query 1425 GGGAAAAGAAGGAGAGGTTCTTAAAGCCAAGATCTGCGAAAAGAAAAACCAAGACATCTA 1484
|||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |||||||
Sbjct 1419 GGGAAAAGAAGGAGAGGTTCATAAAGTCAAGATCCGCGAGAAGAAAAACCAATACATCTA 1478
Query 1485 TATTTCAAATGAAGCATTGTGCAAAGTAATGAAGCGACCAGAGATTAA-GAAAGAAGATG 1543
|| | ||||||||| |||||||||||||||||||||| |||| ||| |||| |||||
Sbjct 1479 TAATCCAAATGAAGGATTGTGCAAAGTAATGAAGCGAGTGGAGA-TAACAAAAGCAGATG 1537
Query 1544 GAAAACATGATC---TGTTACTCAAAAGTTACAATGACAGTAATGAGAAGAAAGCAGAAG 1600
|||||||||||| ||||||||| ||| || |||||||||||| ||| |||||||||||
Sbjct 1538 GAAAACATGATCAAATGTTACTCAGAAGCTATAATGACAGTAATAAGATGAAAGCAGAAG 1597
Query 1601 TAGATACATGCATCAAAAGTTCTCAAGTTTCAGGTGTTGAGCATAAGAAAGAGATCAAAG 1660
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CAGAGACATGCATCAAAAGTTCTCAAGTTTCAGGTGTTGAGCATAAGAAAGAGATCAAAG 1657
Query 1661 ATGACTCAATTCTTCTTATTGCCGCAGAGAGAGTCCCATGTCAAGCTCCATCAGAAAATC 1720
||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1658 ATGACTCAATTCTGCTCATTGCCGCAGAGAGAGTCCCATGCCAAGCTCCATCAGGAAATC 1717
Query 1721 AGCATCATGGGCGTATGTTCACAAATGGGATGGATCAACAAGCTCCAATACCAAAGTCTG 1780
|||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1718 AGCATCATGGGCTTATGTTCACGGATGGGATGGATCAACAAGCTCCAATATCAAAGTCTG 1777
Query 1781 ATGGAAATTCAGATATATTATCCAAGACAGTATATAAAGAAACAAAAGGGGAGATAGAAG 1840
| |||||||||| || ||||||||||||||||||| ||| | ||||||| ||| ||||||
Sbjct 1778 AAGGAAATTCAGTTAGATTATCCAAGACAGTATATGAAGGAGCAAAAGGAGAGGTAGAAG 1837
Query 1841 CTGGTTTACCCTTGTTGGAGAAGCGACAAGAACGCCGAAAACGAGAAACAACAGAGACAT 1900
|| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 1838 CTAGTTTACCCTTGTTGGAGAAGCGACAAGAACACCAAAAACGAGAAACTACAGAGACAT 1897
Query 1901 TATCCGAAAATGAAATAAACCTAAAGAAGATATTTGTGAAAAGCCAATTATTTCTAGACA 1960
|||| |||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 1898 TATCTGAAAATGAAACAAACCTCAAGAGGATATTTGTGAAAAGCCAACTATTTCTAGACA 1957
Query 1961 CAGCAAAGGCACATTTCAAACTCAACATTCCTCAAAATGTCTTTCATGACACCACCAGTG 2020
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 1958 CAGCAAAGGCACTTTTCAAACTCAACATTCCTCAAAATGTATTTCATGACGCCACCGGTG 2017
Query 2021 GGAGCTATTAC-TATCAAGAAGACAAGAATCTAACCCTCGAGTGTGCCTTCGAGCTAATG 2079
||||| | ||| || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2018 GGAGCAACTACTTA-CAAGAAGACAAGAATCTAATCCTCGAGTGTGCCTTCGAGCTAATG 2076
Query 2080 AAACGAAAAAGGAGATTTCAAGAGTTAAGTGTCCATCCTTTCGTGAAGGTACCCATAAGT 2139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2077 AAACGAAAAAGGAGATTTCAAGAGTTAAGTGTCCATCCTTTCGTGAAGGTACCCATCAGT 2136
Query 2140 TCCTCTAAAATAAACTCATTGGACCATCTTATTAGACAAATAAGCAAAGAGTTAGAGAAG 2199
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 TCCTCTAGAGTAAACTCATTGGACCATCTTATTAGACAAATAAGCAAAGAGTTAGAGAAG 2196
Query 2200 CTGAGAGCCTACGGTAGAGACTGCCACATTGGATCACATGTTGAAGACTACGTGTTGGAA 2259
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2197 CTGAGAGCCTACGGTAGGGACTGCCACATTGGATCACATGTCGAAGACTACGTGTTGGAA 2256
Query 2260 AGAGATGTTCACTATAAAGACCCATACTTGAACTCAATGTGGGACATGGGTTGGAATGAT 2319
|||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct 2257 AGAGATGTTCACCATAAAGACCCAAACTTGAACTCAATGTGGGATATGGGCTGGAACGAT 2316
Query 2320 TCGATGCTCGCGTTCATCGAGAAAGATGATGTTATGAGGGATATAGAGAGGGAAGTCTTC 2379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2317 TCGATGCTCGCCTTCATCGAGAAAGATGATGTTATGAGGGATATAGAGAGGGAAGTCTTC 2376
Query 2380 AGTGGACTCTTGGAAGAGATAACAAGAGATCTTATATGCATATAG 2424
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2377 AGTGGACTCTTGGAGGAGATAACAAGAGATCTTATATGCATATAG 2421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5