BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42720.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494762 jgi|Araly1|494762|fgenesh2_kg.8__578__AT5G42720.1 2464 0.0
Ahg491210 jgi|Araly1|491210|fgenesh2_kg.7__643__AT4G34480.1 206 6e-52
Ahg480794 jgi|Araly1|480794|fgenesh2_kg.3__3495__AT2G16230.1 198 1e-49
> Ahg494762 jgi|Araly1|494762|fgenesh2_kg.8__578__AT5G42720.1
Length=1706
Score = 2464 bits (1334), Expect = 0.0
Identities = 1591/1713 (93%), Gaps = 26/1713 (2%)
Strand=Plus/Plus
Query 24 TAGTCTTCGTTTACTAATTCTCTCTCACAAATCCAAACAAAAAGGAACTGTGTACTTAAA 83
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 1 TAGTCTTCGTTTACTAATTCTCTCTTACAAATCCAAACAAAAAGGAACTGTGAACATAAA 60
Query 84 TCCTGTAATGACAATTTC--A-T-ACATACTAAACAAGAACTATTAAATACTAGGATAAT 139
|||||||||||||||||| | | || ||||||||||||||||| |||||||||||||||
Sbjct 61 TCCTGTAATGACAATTTCAAATTAACCTACTAAACAAGAACTATGAAATACTAGGATAAT 120
Query 140 ACATACTTGAAGAAATAACAACTCTTCATGTAGTCGTG---TCT-TTTTACAATTTAAAA 195
|||||||| ||||||||| ||||||||||||||||||| | | |||||| ||||||||
Sbjct 121 ACATACTTAAAGAAATAAAAACTCTTCATGTAGTCGTGTTTTTTATTTTACCATTTAAAA 180
Query 196 TTTGAAAA-ATAAAAGTTACATTTACCTTTACAACGTCGGTCGTTTTC--CA-C---A-C 247
|||||||| | ||||||||||||||||||||||||| ||||||||||| || | | |
Sbjct 181 TTTGAAAAGA-AAAAGTTACATTTACCTTTACAACGCCGGTCGTTTTCTACACCTATATC 239
Query 248 AATAGATTACCCACTTCTACTCGATAGTTTTCTCTATAATATAGAGACAAAAGAAGAGAG 307
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TATAGATTACCCACTTCTGCTCGATAGTTTTCTCTATAACATAGAGACAAAAGAAGAGAG 299
Query 308 CATTTAAATTCTAAAGAACaaaaaaggaaaaaCAGAGCAGCCATGAGAGCTTCTGTTTAT 367
||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 300 AATTTAAACTGAAAAGAACAAAGAAGGAAAAACAGAGCAGCCATGATAGCTTCTGTTTAT 359
Query 368 TCATTGATCCTACTCTTCTTCTCGTGTTTACTACATCTATCAAAGTCTCAACCGTTCCTC 427
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TCATTGATCCTTCTCTTCTTCTCGTGTTTAGTACATCTATCAAAGTCTCAACCGTTCCTC 419
Query 428 -GGAGTAAACTACGGCCTAACCGCCGACAATCTTCCACCTCCGTCAGCGAGTGCAAAGCT 486
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GGGA-TAAACTACGGACTAACCGCAGACAATCTTCCACCTCCGTCAGCGAGTGCAAAGCT 478
Query 487 CCTTCAATCCACAACTTTCCAAAAAGTCCGTCTTTACGGATCCGACCCGGCTGTAATCAA 546
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCTCCAGTCCACAACTTTCCAAAAAGTCCGTCTTTACGGATCCGACCCGGCTGTAATCAA 538
Query 547 GGCCCTAGCAAACACGGGGATCGAGATCGTCATCGGGGCGTCTAACGGCGATGTACCCGG 606
|||||| |||||||||||||| |||||||| || ||||| || || ||||||||||||||
Sbjct 539 GGCCCTTGCAAACACGGGGATTGAGATCGTTATTGGGGCATCGAATGGCGATGTACCCGG 598
Query 607 TCTAGCATCGGACCCGAGTTTCGCCCGAAGCTGGGTCGAAACCAACGTGGTACCTTATTA 666
| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 599 TTTAGCATCCGACCCGAGTTTCGCTCGAAGCTGGGTCCAAACCAACGTGGTACCTTACTA 658
Query 667 TCCAGCGAGCAAGATTGTTCTCATTGCCGTGGGAAATGAGATCACATCATTCGGCGACAA 726
||| |||||||||||||||||||| |||||||| || ||||||||| |||| ||||||||
Sbjct 659 TCCGGCGAGCAAGATTGTTCTCATAGCCGTGGGGAACGAGATCACAACATTTGGCGACAA 718
Query 727 CAGTCTCATGTCGCAGCTTTTGCCGGCGATGAAAAATGTCCAAACTGCCCTCGAGGCGGC 786
|| |||||||||||||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct 719 CAATCTCATGTCGCAGCTTTTGCCGGCAATGAAAAATGTCCAAAGTGCTCTTGAGGCGGT 778
Query 787 GTCTCTTGGTGGCGGGAAAATCAAAGTCTCGACAGTACACATAATGTCGGTTCTAGCCGG 846
||||||||||||||||||||| || |||||||| ||||| ||||||| ||||| |||||
Sbjct 779 GTCTCTTGGTGGCGGGAAAATTAAGGTCTCGACGGTACATGTAATGTCAGTTCTGGCCGG 838
Query 847 GTCAGACCCTCCTTCGACCGCGGTATTTAAACCGGAGCATGCTGATATATTGAAGGGATT 906
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 839 GTCAGACCCTCCTTCGGCCGCGGTATTTAAACCGGAGCATGCTGATATATTGAAAGGATT 898
Query 907 GCTAGAGTTTAATAGTGAAACCGGGTCGCCTTTCGCGGTTAACCCCTACCCGTTTTTCGC 966
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 899 GCTAGAGTTTAATAGTGAAACCGGGTCGCCTTTCGCGGTTAATCCGTACCCGTTTTTCGC 958
Query 967 TTACCAAGATGACCGGAGACCCGAAACGTTGGCCTATTGCTTGTTTCAGGCC-AATCCTG 1025
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 959 TTACCAGGATGACCGGAGACCCGAAACGTTGGCCTATTGCTTGTTTCA-GCCTAATCCTG 1017
Query 1026 GCCGTGTCGACCCCAACAGCAACCTCAAGTATATGAACATGTTCGATGCTCAGGTTGATG 1085
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCCGTGTCGACCCCAAGAGCAACCTCAAGTATATGAACATGTTCGATGCTCAGGTTGATG 1077
Query 1086 CGGTGTATTCAGCTTTGAACTCGATGGGGTTCAAGGACGTAGAGATAATGGTCGCTGAGA 1145
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1078 CGGTGTATTCAGCTTTGAACTCGATGGGGTTCAAAGATGTAGAGATAGTGGTCGCTGAGA 1137
Query 1146 CTGGATGGCCATACAAGGGAGACCCGGAGGAGGCTGGTGCAACAGTTGAGAACGCTAGAG 1205
|||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1138 CTGGGTGGCCGTACAAGGGCGACCCAGAGGAGGCTGGTGCAACAGTTGAGAACGCTAGAG 1197
Query 1206 CTTACAATAAAAATCTCATTGCTCATTTAAAATCTGGGTCCGGGACGCCACTTATGCCCG 1265
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1198 CTTACAATAAAAACCTCATTGCTCATTTGAAATCTGGGTCCGGGACGCCACTGATGCCCG 1257
Query 1266 GGAGAGTGATCGACACATACTTGTTCGCATTGTACGACGAGAATCTCAAGCCCGGGAAAG 1325
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGAGAGTGATCGATACATACTTGTTCGCATTGTACGACGAGAATCTCAAGCCCGGGAAAG 1317
Query 1326 GTTCTGAACGAGCCTTCGGTTTGTTTAGACCTGATCTAACCATGACTTATGATATCGGGC 1385
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1318 GTTCTGAACGAGCCTTCGGTTTGTTTAGACCTGATCTGACCATGACTTACGATATAGGGC 1377
Query 1386 TCACCAAGACTACCAATTATAACCAAACTTCCATGGCTCCATTGTCACCAACAAGGCCAC 1445
||||||||||||||||| | | ||||||||||||||||||| |||| ||||||| |||||
Sbjct 1378 TCACCAAGACTACCAAT-A-A-CCAAACTTCCATGGCTCCAGTGTCGCCAACAACGCCAC 1434
Query 1446 GTCTTCCACCAGCCGCGGCCCCGACGAGACAAACATTACCTTCTCCTCCGCAGATGATTC 1505
|||| |||||||||||||||||||| || ||||| |||||| ||||||||||||||||||
Sbjct 1435 GTCTGCCACCAGCCGCGGCCCCGACAAGGCAAACCTTACCTGCTCCTCCGCAGATGATTC 1494
Query 1506 TTCCTTCACCAGTTACTCCCTCCGACAAAAACTCTGGGCAAACCGATGTTCACAATTCCA 1565
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1495 TCCCTTCACCAGTTACTCCCTCCGACAAAAACTCTGGACAAACCGATGTTCACAATTCCA 1554
Query 1566 CTCCGCGCTCTGCCTCTCTGGCTCACATATGCCGCTCTCTCTCTATTTCGGCATCGATGT 1625
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1555 CTCCACGCTCTGCCTCTCTGGCTCACATATGCCGTTCTCTCTCTATTTCAACATCGATGT 1614
Query 1626 TCTTTGTCTCCGTTTTGTATGCATTGATCATATTGTTGTAAAATCT-CTTCATCGATCTT 1684
| ||| |||||||| |||||||||||||||||| ||||| |||||| || ||||||||||
Sbjct 1615 TGTTTCTCTCCGTTCTGTATGCATTGATCATATAGTTGTGAAATCTTCT-CATCGATCTT 1673
Query 1685 ATATTATGTCTCTTACTAATTTAAACTAAACTA 1717
||||||||||||||||||||||||||| |||||
Sbjct 1674 ATATTATGTCTCTTACTAATTTAAACTTAACTA 1706
> Ahg491210 jgi|Araly1|491210|fgenesh2_kg.7__643__AT4G34480.1
Length=1137
Score = 206 bits (111), Expect = 6e-52
Identities = 672/933 (72%), Gaps = 77/933 (8%)
Strand=Plus/Plus
Query 422 TTCCTCGGAGTAAACTACGGCCTAA-CCGCCGACAATCTTCCACCTCCGTCAGCGAGTGC 480
||| ||||||| |||||||||| || |||||||||||| || ||||| |||| | ||
Sbjct 80 TTCATCGGAGTTAACTACGGCC-AAGTCGCCGACAATCTCCCTCCTCCTTCAGAAACCGC 138
Query 481 AAAGCTCCTTCAATCCACAACTTTCCAAAAAGTCCGTCTTTACGGATCCGA-CCCGGCTG 539
|||||||| |||||||| || |||| ||||| || || ||||| |||| ||| ||
Sbjct 139 CAAGCTCCTCCAATCCACTTCTATCCAGAAAGTTCGACTCTACGGCGCCGATCCC-GCCA 197
Query 540 TAATCAAGGCCCTAG-C-AAACACGGGGATCGAG-ATCGTCATCGGGGCGT-CTAACGGC 595
| ||||| || | | | |||| |||| | | | |||||||| || || | ||||||||
Sbjct 198 TCATCAAAGCTTTGGCCGGAACA-GGGG-TTG-GTATCGTCATAGGCGC-TGCTAACGGC 253
Query 596 GATGTACCCGGTCTAGCATCGGA-CCCGAGTTTCGCC-C-GAAGCTGGGTCGAA-ACCAA 651
|| || || ||| || || || ||| | |||| | || ||| || || ||||
Sbjct 254 GACGTTCCTTCTCTCGCCTCCGATCCC-AACGCCGCCACTCAA--TGGATC-AACTCCAA 309
Query 652 CGTGGTACCTTATTATCCAGCGAGCAAGATTGTTCTCATTGCCGTGGGAAATGAGATCAC 711
|| | |||| |||||| || ||| || | ||||| |||| || || ||||| |
Sbjct 310 TGTCCTTCCTTTTTATCCCGCTTCCAAAATCATCCTCATCACCGTCGGCAACGAGAT-TC 368
Query 712 ATCAT-TCG-GCGA--CAACAGTCTCATGTCGCAGCT-TTTGCCGGCGATGAAAAATGTC 766
| || ||| ||| ||| | ||| || ||||| || ||||||||| ||||||||
Sbjct 369 -TGATGTCGAACGATCCAA-A-TCTGGTGAATCAGCTACTT-CCGGCGATGCAAAATGTC 424
Query 767 CAAACTGCCCTCGAGGCGGCGTCTCTTGGTGGCGGGAAAATCAAAGTCTCGACAGTACAC 826
|||| ||||| ||||||| ||||| | ||||||||||||| |||||||| || |||
Sbjct 425 CAAAAAGCCCTTGAGGCGGTGTCTC-T--CGGCGGGAAAATCATGGTCTCGACGGTGCAC 481
Query 827 AT-AATGTCGGTTCTAGCCGGGTCAGACCCTCCTTCGACCGCGGT-ATTT-AAACCGG-- 881
| ||| |||| || | | |||||||| || ||||||| | | |||| ||||
Sbjct 482 -TCGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGACCG-GTTCATTTGCGGCCGGTT 539
Query 882 AGCATGCTGATATATTGAAGGGA--TTGCTAGAGTTTAAT-AGTGAAACCGGGTCGCCTT 938
| || | | | | | |||| | |||| | | ||| | || || || || || ||||
Sbjct 540 ATCAAACCGGT-T-TAAAAGGAATTTTGC-A-A-TTT-CTAAGCGACACTGGTTCACCTT 593
Query 939 TCGCGGTTAACCCCTACCCGTTTTTCGCTTACC-AAGATGA-CCGGAGACCCGAAACGTT 996
| || |||| || |||||||| ||||| |||| ||| ||| || ||||||||||||| |
Sbjct 594 TTGCTATTAATCCGTACCCGTTCTTCGCGTACCAAAG-TGATCC-GAGACCCGAAACGCT 651
Query 997 GGCCTATTG-CTTGTTTCAGGCC-AATC-CTGGCCGTGTCGAC-CC-CAACAGCAACCTC 1051
| | | ||| ||| || || ||| || | | || || |||||| || ||| | || ||
Sbjct 652 GTCGTTTTGCCTT-TTCCA-GCCTAA-CGCCGGACGGGTCGACTCCAAAACCGGAA--TC 706
Query 1052 AAGTATATGAACATGTTCGATGCTCAGGTTGATGCGGTGT-ATTCAGCTTTGAACTCGAT 1110
||||| | |||||||||||||||||||||||||||||| | | || |||||||| |||||
Sbjct 707 AAGTACACGAACATGTTCGATGCTCAGGTTGATGCGGT-TCACTCGGCTTTGAAATCGAT 765
Query 1111 GGGGTTC-AAGGACGTAGAGATAATGGTCGCTGAGACTGGATGGCCATACAAG-GGAGAC 1168
||| ||| || | || ||||| |||| || || || || ||| | | |||| || |||
Sbjct 766 GGGATTCGAAA-AGGTGGAGATCGTGGTGGCGGAAACAGGTTGGGCGT-CAAGAGGGGAC 823
Query 1169 CCGGAGGAGGCTGGTGCAA-CAGTTGAGAACGCTAGAGCTTACAATAAAAATCTCATTGC 1227
| | |||| ||| |||| | || || ||||| | ||||||||| ||| || || ||
Sbjct 824 GCTAACGAGGTTGGAGCAAGC-GTGGATAACGCCAAAGCTTACAACGGAAACCTAATAGC 882
Query 1228 TCATTTAAAATCTG-GGTCCGGGACGCCACTTATGCCCGGGAGAG-TGATCGACACATAC 1285
|||| ||| ||| ||| || || || || ||||| || | | || | ||||| |||
Sbjct 883 TCATCTAAGGTCTATGGTT-GGCACACCTCTCATGCCTGGAAAACCTGTT-GACACTTAC 940
Query 1286 -TTGTTCGCATTGTACGACGAGAATCTCAAGCC 1317
|| |||||| |||| || |||||||| |||||
Sbjct 941 CTT-TTCGCACTGTATGATGAGAATCTAAAGCC 972
> Ahg480794 jgi|Araly1|480794|fgenesh2_kg.3__3495__AT2G16230.1
Length=1359
Score = 198 bits (107), Expect = 1e-49
Identities = 332/436 (76%), Gaps = 34/436 (8%)
Strand=Plus/Plus
Query 899 AAGGG-ATTGCTAGAGTTTAATAGTGAAACCGGGTCGCCTTTCGCGGTTAACCCCTACCC 957
||||| ||| ||| |||| ||| || || | ||||||||| || | ||||| |||||
Sbjct 544 AAGGGCATT-CTACAGTTCCTTAGCGATACTGAGTCGCCTTTTGCCATCAACCCGTACCC 602
Query 958 GTT-TTTCGCTTACCAAGA-TGACCGGAGACCCGAAACGTTGGCCTATTG-CTTGTTTCA 1014
||| ||| || |||| ||| |||| ||||||||||||| |||| | ||| ||| || ||
Sbjct 603 GTTCTTT-GCGTACC-AGAGCGACCCGAGACCCGAAACGCTGGCGTTTTGTCTT-TTCCA 659
Query 1015 GGCC-AATCCTGGCCGTGTCGACCCCAACA--GCAACCTCAAGTATATGAACATGTTCGA 1071
||| || ||||| || || ||| |||||| | || ||||||| ||||||||||||||
Sbjct 660 -GCCTAACCCTGGACGGGTAGACTCCAACACTGGAA--TCAAGTACATGAACATGTTCGA 716
Query 1072 TGCTCAGGTTGATGCGGTGTATTCAGCTTTGAACTCGATGGGGTTCAAGGACGTAGA-GA 1130
||||||||||||||| || | ||||||||||| |||||||| ||| || | ||||| |
Sbjct 717 TGCTCAGGTTGATGCAGTACACTCAGCTTTGAAATCGATGGGATTCGAGAAAGTAGAAG- 775
Query 1131 TAATGGTCGCTGAGACTGGATGGCCATACAAG-GGAGACC-CGGAGGAGGCT-GGTGCAA 1187
| |||| || || || || ||||||| | | || ||| | | |||| | ||| |||
Sbjct 776 TGTTGGTAGCCGAAACAGGTTGGCCAT-CTACCGGTGACAACA-ACGAGG-TAGGTCCAA 832
Query 1188 CAGTTGAGAACGCTAGAG-CTTACAATAAAAATCTCATTGCTCATTTAAAATC--TGGGT 1244
|||||||| |||| || |||||||| ||||||||||||||| |||| || ||| |
Sbjct 833 GTGTTGAGAATGCTA-AGGCTTACAATGGAAATCTCATTGCTCACTTAAGGTCCATGGTT 891
Query 1245 CCGGGACGCCACTTATGCCCGGGAGAGTG-ATCGACACATAC-TTGTTCGCAT-TGTACG 1301
|| || || || |||||||| | | | |||||||| ||| || ||||| | | | |
Sbjct 892 --GGCACTCCGCTCATGCCCGGCAAA-TCCATCGACACTTACATT-TTCGC-TCTCTTTG 946
Query 1302 ACGAGAATCTCAAGCC 1317
||||||||||||||||
Sbjct 947 ACGAGAATCTCAAGCC 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5