BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42740.1
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494761 jgi|Araly1|494761|fgenesh2_kg.8__577__AT5G42740.1 3157 0.0
> Ahg494761 jgi|Araly1|494761|fgenesh2_kg.8__577__AT5G42740.1
Length=2031
Score = 3157 bits (1709), Expect = 0.0
Identities = 1938/2045 (95%), Gaps = 29/2045 (1%)
Strand=Plus/Plus
Query 69 GAACCTTCCGTCAACACGTGTCATACCCTCAGCTCTCACACGCTTCTTCCCTATCG---- 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GAACCTTCCGTCAACACGTGTCATACCCTCAGCTCTCACA-----CTTCCCTATCGCTTT 55
Query 125 GAAAc-ttt-ctctct-tc--tagctttcttcttctcacaattccggaatcttcttcttc 179
| ||| |||||| || |||||||||||||||||||||||| ||||||||||||||
Sbjct 56 TTTTCTTTTCCTCTCTCTCAATAGCTTTCTTCTTCTCACAATTCCAGAATCTTCTTCTTC 115
Query 180 acctcatcttcGAAGACCTTCAGTAATGGCGTCATCAACCGCTTTGATTTGTGATACCGA 239
|||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 116 ACCTCATCTTCGAAGATCTTCAGTAATGGCGTCATCAACTGCTTTGATTAGTGATACCGA 175
Query 240 AGCGTGGAAGGATTTGAAGGGACATGTAGAAGATATTAAGAAGACTCATTTGCGTGATTT 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 176 AGCGTGGAAGGATTTGAAGGGACATGTTGAAGATATTAAGAAGACTCATTTGCGTGATTT 235
Query 300 GATGAGTGATGCTAATAGATGCCAGTCCATGATGATGGAGTTTGATGGGTTGCTGTTGGA 359
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 236 GATGACTGATGCTAATAGATGCCAGTCCATGATGATGGAATTTGATGGGTTGCTGTTGGA 295
Query 360 TTATTCTCGACAGCGTGCAACTGTTGAGACAATGGACAAGCTTTTGAACTTGGCAAAGGC 419
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 296 TTATTCTCGACAGCGTGCAACTGTAGAGACAGTGGACAAGCTTTTGAACTTGGCAAAGGC 355
Query 420 TTCTCAATTGACAGAGAAGATCAGCCGCATGTTCAATGGGGAGCATATTAACAGTACAGA 479
| | || ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 356 TGCACAGTTGACTGAGAAGATCAGCCGCATGTTCAACGGGGAGCATATTAACAGTACGGA 415
Query 480 GAACAGATCAGTTCTTCATGTTGCGCTCCGTGCTCCAAAGGATGCAGTTATCAAGGCTGA 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GAACAGGTCAGTTCTTCATGTTGCGCTCCGTGCTCCAAAGGATGCAGTTATCAAGGCTGA 475
Query 540 TGGAATGAATGTGGTTCCAGAAGTGTGGAACGTTCTAGATAAGATCAAGGAATTTTCTGA 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGGAAAGAATGTGGTTCCAGAAGTGTGGAACGTTCTAGATAAGATCAAGGAATTTTCTGA 535
Query 600 CAAAATTCGCTCTGGTTCATGGGTTGGAGCCACTGGCAAACCGCTGAAAGATGTCATTGC 659
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 GAAAATTCGCTCTGGTTCATGGGTAGGAGCCACTGGCAAACCGCTGAAAGATGTCATTGC 595
Query 660 GATTGGTATTGGTGGTAGCTTCTTAGGTCCACTGTTTGTCCACACGGCTCTCCAAACAGA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 GATTGGTATTGGTGGTAGCTTCTTAGGTCCACTGTTTGTACACACGGCTCTCCAAACAGA 655
Query 720 TCCTGAAGCTCTAGAGTCTGCTAAAGGACGCCAGCTGCGATTTCTTGCAAATATTGATCC 779
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 656 CCCTGAAGCTCTAGAGTCTGCTAAAGGACGTCAGCTGCGATTCCTTGCGAATATTGATCC 715
Query 780 TGTTGATGTTGCTAGAAATATCAGT-GGACTAAATCCAGAAACTACTCTAGTTGTGGTGG 838
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 716 TGTTGATGTTGCTAGAAATATCA-TCGGACTAAATCCAGAAACTACTCTAGTTGTGGTGG 774
Query 839 TCTCGAAAACGTTTACAACAGCTGAAACAATGCTT-AACGCCAGAACATTGAGGGAATGG 897
|||| ||||| ||||||||||| || |||||| || ||||| || |||||||||||||||
Sbjct 775 TCTCAAAAACATTTACAACAGCAGAGACAATG-TTGAACGCTAGGACATTGAGGGAATGG 833
Query 898 ATAACAGCTGCTCTTGGGGCTTCAGCTGTTGCAAAACATATGGTTGCTGTCAGCACTAAT 957
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 ATAACAGCTGCTCTCGGGGCTTCAGCTGTTGCAAAACACATGGTTGCTGTCAGCACTAAT 893
Query 958 CTTGCGTTAGTAGAGAAGTTTGGTATTGACCCGAACAATGCATTTGCATTTTGGGACTGG 1017
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 894 CTTGCGTTAGTGGAGAAGTTCGGAATTGACCCGAACAATGCATTTGCATTTTGGGACTGG 953
Query 1018 GTTGGTGGAAGGTACAGTGTTTGCAGTGCGGTTGGAGTCTTACCTTTGTCTCTGCAGTAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTTGGTGGAAGGTACAGTGTTTGCAGTGCGGTTGGAGTCTTACCTTTGTCTCTGCAGTAT 1013
Query 1078 GGCTTCTCCATGGTTGAGAAGTTTTTGAAGGGAGCTTCAAGCATTGATCAGCATTTCCAG 1137
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GGCTTCTCCGTGGTTGAGAAGTTTTTGAAGGGAGCTTCAAGCATTGATCAGCATTTCCAG 1073
Query 1138 TCCACACCGTTCGAGAAGAATATACCTGTGCTTTTAGGGTTGTTGAGTGTATGGAATGTA 1197
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1074 TCCACACCGATCGAGAAGAATATACCTGTACTTTTAGGGTTGTTGAGTGTATGGAATGTA 1133
Query 1198 TCATTTCTTGGATATCCTGCTAGGGCCATCTTACCTTATTCGCAAGCCCTTGAGAAATTT 1257
|||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1134 TCATTTCTTGGATACCCTGCCAGGGCCATCTTACCTTACTCCCAAGCCCTTGAGAAATTT 1193
Query 1258 GCTCCACACATTCAACAGGTTAGTATGGAGAGTAATGGAAAGGGAGTCTCAATTGATGGT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GCTCCACACATTCAACAGGTTAGTATGGAGAGTAATGGAAAGGGAGTCTCAATTGATGGT 1253
Query 1318 CTACCTCTCCCGTTCGAGACTGGTGAGATTGATTTTGGTGAACCTGGAACAAATGGTCAA 1377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1254 CTACCTCTCCCGTTCGAGACTGGTGAGATTGATTTTGGTGAACCTGGTACAAATGGTCAA 1313
Query 1378 CACAGCTTTTACCAACTCATTCACCAGGGACGCGTAATCCCTTGTGATTTCATTGGCATT 1437
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CACAGCTTTTACCAACTAATTCACCAGGGACGCGTAATCCCTTGTGATTTCATTGGCATT 1373
Query 1438 GTGAAGAGTCAGCAACCTGTGTACCTTAAGGGAGAGGTGGTCAGTAACCACGACGAGCTC 1497
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1374 GTGAAGAGTCAGCAACCTGTGTATCTGAAGGGAGAGGTGGTCAGTAACCACGACGAGCTC 1433
Query 1498 ATGTCAAACTTTTTTGCACAGCCTGATGCTCTTGCATATGGAAAAACTCCTGAACAGCTG 1557
||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1434 ATGTCCAACTTTTTTGCCCAGCCTGATGCTCTTGCTTATGGAAAAACACCTGAACAGCTG 1493
Query 1558 CAGAAAGAGAATGTTTCAGAAAATCTCATTCCCCATAAGACATTCTCTGGAAATCGACCT 1617
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1494 CAGAAAGAGAATGTTTCAGAAAATCTCATTCCCCACAAGACATTCTCCGGAAATCGACCT 1553
Query 1618 TCTCTTAGCCTTCTACTTCCAGAATTGACTGCTTACAATGTTGGCCAGTTGTTGGCTATC 1677
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1554 TCTCTTAGCCTTCTACTTCCAGAATTGACTGCTTACAATGTTGGCCAGTTATTGGCAATC 1613
Query 1678 TATGAACACAGAGTAGCAGTTCAAGGCTTTGTGTGGGGTATCAATTCGTTTGACCAGTGG 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1614 TATGAACACAGAGTAGCAGTTCAAGGCTTTGTGTGGGGTATCAATTCGTTTGACCAATGG 1673
Query 1738 GGCGTTGAGCTAGGAAAAGTTCTGGCTACTCAGGTCAGGAAACAGCTTCATTCATCACGC 1797
|| |||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct 1674 GGAGTTGAGCTAGGAAAAGTTCTTGCTACTCATGTGAGGAAGCAGCTTCATTCATCACGC 1733
Query 1798 ACTCAAGGAACCGCTCCCGAGGGATTCAATTACAGTACCACCACACTTTTGAAACGATAT 1857
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ACTCAAGGCACCACTCTCGAGGGATTCAATTACAGTACCACCACACTTTTGAAACGATAT 1793
Query 1858 CTCGAGACAAGTTCCGAGCCCCAGATGTGATGACCAAGCCCAAGTTTCTCTCCTTCGACC 1917
|||||||||||||||||||| |||||||||||| ||||||| |||||||| | ||| |||
Sbjct 1794 CTCGAGACAAGTTCCGAGCCACAGATGTGATGAACAAGCCCCAGTTTCTC-C-TTC-ACC 1850
Query 1918 -AAACGTGAACCATTTGAGCATTTTTCAC-CCTTGTTCTTCtttttttC-ACTGTCCCTG 1974
|||||||||||||| ||||||| ||| ||| |||||||| |||||| |||||||||
Sbjct 1851 CAAACGTGAACCATTCCCGCATTTTGCACTCCT-GTTCTTCTCTTTTTCCACTGTCCCTA 1909
Query 1975 ATCAGAGTATACTTTATCGGCACTCATAAATTATCTAAAAATGGGTACTAATAA-TCCAA 2033
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1910 ATCAGAGTATACTTTATCGGCACTCATAAATTATCTAAAAATGGGTACTAATAAATCCAA 1969
Query 2034 ACCCCATAAAATCAGAATTGGGAGCATAATATCAGAGGAGCtttttttCTCTAAATTATA 2093
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1970 ACCCCATAAAATCAGAATTGGGAGCATAATATCAGAC-AGCTTTTTTTCT--AATTTATA 2026
Query 2094 TGCAC 2098
|||||
Sbjct 2027 TGCAC 2031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81170312095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5