BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42750.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494760 jgi|Araly1|494760|fgenesh2_kg.8__576__AT5G42750.1 1991 0.0
> Ahg494760 jgi|Araly1|494760|fgenesh2_kg.8__576__AT5G42750.1
Length=1325
Score = 1991 bits (1078), Expect = 0.0
Identities = 1263/1346 (94%), Gaps = 37/1346 (3%)
Strand=Plus/Plus
Query 1 GAAAGTTTCAAGACCGAACCTAATAATAATATTATTATACCATCATATCCTTTGATCAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAGTTTCAAGACCGAACCTAATAATAATATTATTATACCATCATATCCTTTGATCAAC 60
Query 61 ACAAAAATCCCttttcccttttttggtttttctactt-tttttCTTCCTCATCAATCATC 119
||||||||||||||| |||||||| |||||| | ||| |||||||| | | |||||||||
Sbjct 61 ACAAAAATCCCTTTT-CCTTTTTTCGTTTTT-T-CTTCTTTTTCTT-C-C-TCAATCATC 114
Query 120 ATGGAAACTAATCTACAACAGGTGAAGAACAGTTCTCAAACTTTTTCTGAAAAGCAAAAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATGGAAACTAATCTACAACAGGTGAAGAACAGTTCTCAAACTTTTTCTGAAAAGCAAAAC 174
Query 180 CCTAAACAAGAAGCTTCACCTTCACCAATATCATCCACTTGttcttctccttctcatgac 239
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CCTAAACAAGAAG------CTTCACCAATATCATCCACTTGTTCTTCTCCTTCTCATGAC 228
Query 240 ttctctttcactatctctctccagcctctctcttcttcctcAAAACACATCAGTCCTACT 299
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 229 TTCTCTTTTACTATCTCTCTCCAGCCTCTCTCTTCTTCCTCAAAACATATCAGCCCTACT 288
Query 300 CTTAGAAGCCCATCCAAAACGACATCGTCTTATCAACAAACCGATCCTTTCGCCGTCGAC 359
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTTAGAGGTTCAACCAAAACGACATCGTCTTATCAACAAACCGATCCTTTCGCCGTCGAC 348
Query 360 TTATCCCCCGCCGATGAAAtcttcttccacggccaccttcttcctctccatctcctctct 419
|||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 349 TTATCCCCGGCCGATGAGATCTTCTTCCACGGCCATCTTCTTCCTCTCCACCTCCTCTCT 408
Query 420 cacctccctgtctctccCCGAACTTCCA-CAGGCTCGTATAATGACGGATTTACCCTCCC 478
||||||||||||||||| |||||||||| || | || |||||||||||||||||||||||
Sbjct 409 CACCTCCCTGTCTCTCCTCGAACTTCCACCA-GTTCTTATAATGACGGATTTACCCTCCC 467
Query 479 CGTCAAAGATATATTACCCGACCAGCCCacaaacaacaacaacaacaCTGAAAACGCTAT 538
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 468 CGTCAAAGATATATTACCTGACCAGCCCAC--A-AACAACAACAACACTGAAAACGCTAT 524
Query 539 CACCAA-CATAAGTACCGAGGCAAAGGACGACAACACCGA-AGACAAAGCAGAGGGCGAG 596
|| ||| ||| ||||| ||||||||| ||||||||||| | |||||||||||| |||||
Sbjct 525 CA-CAACCATCAGTACGGAGGCAAAGAACGACAACACC-AGCGACAAAGCAGAGAGCGAG 582
Query 597 -A----T-TCGGGTAAAAACCAAACCCATTAAGTCATTTTCTCTCTTTGGTTTATCAAAA 650
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 583 AATCTTTCTCGGGTAAAAACCAAACCCATGAAGTCATTTTCTCTCTTTGGTTTATCAAAA 642
Query 651 TGGAGAAAGGGTTTTGAAAGCAACGAGCGAGAACAAGAACAACAACAACAGAAGATCAAG 710
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 643 TGGAGAAAGAGTTTTGAAAGCAACGAGCGAGAACAAGAACAGCAGCAACAGAAGATCAAG 702
Query 711 AAACCTATGAGCTTAGACCTAAGTCACGCCGTCAAGAAGTACATAAGGATGTTGTTTCAG 770
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 703 AAACCTATAAGCTTAGACCTAAGTCACGCGGTCAAGAAGTACATAAGGATGTTGTTTCAG 762
Query 771 AAAAGAGGAAACGGCACGCAGTTTTGGAACAGAAGACAGACTTCTTCTTACTCTTTCTCT 830
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 763 AAAAGAGGAAACGGCACGCAGTTTAGAAACAGAAGACAGACTTCTTCTTATTCTTTCTCT 822
Query 831 TCCTCTCTTATGGGTCCAAACGGAAACAGCAAAACAATGATTAATGGATCTTACAACAAG 890
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 823 TCCTCTCTTATGGGTCCAAACGGAAACAGCAAAACAATGATTAATGGATCATACAACAAG 882
Query 891 AGAGATCTCATAAGAGGAAGGAGAGGTGAATTGTTCTCGGCTCCGGCGTCGATGAGAACA 950
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 883 AGAGATCTGATTAGAGGAAGGAGAGGTGAGTTGTTCTCGGCTCCGGCGTCGATGAGAACA 942
Query 951 TCTCCGACTAATAGTGGCCATCTTCGTGTGTCTACGGCCGGACTATCGTCAAGCTCGGGG 1010
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 943 TCTCCGACTAATAGTGGACATCTCCGTGTGTCCACGGCCGGACTATCGTCAAGCTCGGGG 1002
Query 1011 TCCACGTCATCATCGTCAAGTGATAGTACCATGGAAGAGTTACAAGCTGCGATTCAAGCA 1070
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1003 TCCACGTCATCATCGTCTAGTGATAGTACCATGGAAGAGTTACAAGCTGCGATACAAGCG 1062
Query 1071 GCTATTGCTCATTGCAAGAACTCAAGCGCCGTTGATCGTGATGATAAGGTTAAGGATTCT 1130
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GCCATTGCTCATTGCAAGAACTCAAGCGCCGTTGATCGTGATGATAAGGTTAAGGATTCT 1122
Query 1131 TGATTTGGTTTTTTCTTTTGTCCTTAATCTGTTGTTCTTTCTTGTCGGAAAGATaaaaa- 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1123 TGATTTGGTTTTTTCTTTTGTCCTTAATCTGTTGTTCTTTCTTGTCGGAAAGAAAAAAAA 1182
Query 1190 gaaaaaa-caaaaGTGTTAGTGTGTGACGTGGATTTTAAGAATTACAGTAGAGGTAATTA 1248
||||||| |||| |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1183 GAAAAAAACAAA-GTGTTAGTGTGTGACGTGGAATTCAAGAATTACAGTAGTGGTAATTA 1241
Query 1249 TTTATTTCGTGTATAG-A-A-AAAA-GGAGTTATTGTTCCTATACTATGTGTCCCCATAA 1304
|||||||||||||||| | | |||| ||||||| ||||||||||||||||||||||||||
Sbjct 1242 TTTATTTCGTGTATAGTATAGAAAAAGGAGTTACTGTTCCTATACTATGTGTCCCCATAA 1301
Query 1305 TTCATTTATAATAATGAAAAAGAGAT 1330
||||||||||||||| |||| |||||
Sbjct 1302 TTCATTTATAATAAT-AAAA-GAGAT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5