BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42770.2
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331123 jgi|Araly1|331123|fgenesh1_pm.C_scaffold_8000466 732 0.0
> Ahg331123 jgi|Araly1|331123|fgenesh1_pm.C_scaffold_8000466
Length=621
Score = 732 bits (396), Expect = 0.0
Identities = 431/448 (96%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 415 GCTGAAGCAATCATGCAGCGGATCCCTGATGGTGAAAACATAGAGGAGGATAAGTCGACC 474
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 175 GCTGAAGCAATCATGCAGCAGATCGCTGATGGTGATAACATAGAGGAGGATAAGTCGACC 234
Query 475 TTACTTATTACTTGTGACCAAGTGGTTGTCTATGAAGATGCTGTTAGAGAGAAACCCTCG 534
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 235 TTACTTATTACTTGCGACCAAGTGGTCGTCTATGAAGATGCTGTCAGAGAGAAACCCTCG 294
Query 535 AGTGTCGAAGAAGCAAGGGAGTACATAAGAGGCTATTCCAAGGGGCATACAGCAACAGTG 594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 295 AGTGTCGAAGAAGCAAGGGAGTACATAAGAGGCTATTCCAAGGGGCACACAGCAACAGTG 354
Query 595 AGTTCTGTGGCTGTGACAAATCTCAAAACAGGAGTCAGAAAAGGAGGCGTCGATAGAGTG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGTTCTGTGGCTGTGACAAATCTCAAAACAGGAGTCAGAAAAGGAGGCGTCGATAGAGTG 414
Query 655 GAGATCTATTTCAATGAAATACCGGAAGAGACTATCGAGAAACTGATTGAGGAAGGCATG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAGATCTATTTCAATGAAATACCGGAAGAGACTATCGAGAAACTGATTGAGGAAGGCATG 474
Query 715 GTGCTTAAGGTGGCTGGTGCACTCCTAATCGAGCATCCGCTAAT-CTTGCCATGCGTTAA 773
||||||||||| |||||||||||||||||||| ||||| || || || ||| || |||||
Sbjct 475 GTGCTTAAGGTAGCTGGTGCACTCCTAATCGAACATCCTCTTATACT-GCCGTGTGTTAA 533
Query 774 GGAAGTGGTTGGGACAACAGATAGTGTGATGGGTCTGCCCAAAGAATTGACTGAGAAACT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGAAGTGGTTGGGACAACAGATAGTGTGATGGGTCTGCCCAAAGAATTGACTGAGAAACT 593
Query 834 GATAAAGGAAGTATTGGCAAGCACATAG 861
||||||||||||||||||||||||||
Sbjct 594 TCTAAAGGAAGTATTGGCAAGCACATAG 621
Score = 287 bits (155), Expect = 1e-76
Identities = 171/179 (96%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 160 ATGGAATCGAATCATCCTCACTTCAAGCTAATTTTGGGATCTTCTTCGATTGCTCGACGT 219
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAATCGAATCAACCTCACTTCAAGCTAATTTTGGGATCTTCTTCGATTGCTCGACGT 60
Query 220 AAGATACTAACAGATATGGGATACCAATTCACTCTCATGAGTGCTGATATTGATGAGAAA 279
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGATTTTAACAGACATGGGATACCAATTCACTCTCATGAGTGCTGATATTGATGAGAAA 120
Query 280 AGCATCCGCAAGGAGAAACCTGAAGAGTTGGTTTTGGCTTTAGCTGAGGCAAAGGCTGA 338
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AGCATTCGTAAGGAGAAACCTGAAGAGTTGGTTTTGGCTTTAGCTGTGGCAAAGGCTGA 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5