BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G42780.1 Length=982 Score E Sequences producing significant alignments: (Bits) Value Ahg948961 jgi|Araly1|948961|scaffold_800848.1 863 0.0 > Ahg948961 jgi|Araly1|948961|scaffold_800848.1 Length=771 Score = 863 bits (467), Expect = 0.0 Identities = 679/778 (87%), Gaps = 27/778 (3%) Strand=Plus/Plus Query 48 TCTTCATCATCATCATCAATGGATGAG---ATAAAACCAAAGAAAGAAGAGAATTCCAAA 104 ||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 4 TCTTCTTCATCATCATCAATGGATGAGATAATAAAACCAAAGAAAGAAGAAAACTCCAAA 63 Query 105 CGACGTCGTAACGTCAAACCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCTTCCA 164 || |||||||| | || | |||||||||||||||||||||||||||||||||||| |||| Sbjct 64 CGTCGTCGTAATGCCACAGCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCCTCCA 123 Query 165 ACATGCAAAACCAAGCCCAAACCCACGCGTACTCATCACGCGCCACCACCGATCCTCGAC 224 ||| ||| |||||| |||||| |||||||| ||||||||||||| || ||||||||||| Sbjct 124 ACACGCAGAACCAAACCCAAATCCACGCGTGCTCATCACGCGCCCCCGCCGATCCTCGAA 183 Query 225 TCAATCTTCAAAGTCACTCACAAGCCACACTACTACGAATGCAGGAAGAATCACGCCGCT 284 || ||||| ||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 184 TCGATCTTAAAAGTTAATCACAAGCCACACTACGGTGAATGCAGGAAGAATCACGCCGCT 243 Query 285 GATATCGGAACCACCGCTTACGACGGCTGCGGCGAGTTTGTTAGCTCCACCGGTGAAGAA 344 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 244 GATATCGGAACCACCGCTTACGATGGCTGTGGCGAGTTTGTTAGCTCCACCGGAGAAGAA 303 Query 345 GATTCTTTAAACTGCGCCGCATGTGGCTGTCACCGTAACTTCCACCGTGAAGAGTTAATC 404 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| Sbjct 304 GATTCTTTAAACTGCGCCGCATGCGGCTGTCACCGGAACTTCCACCGTGAAGAGTCCATC 363 Query 405 CCGGAGAACGGCGGCGTTACTGAGACGGTTCTTGAAGTTCTCAAGATTTCATCGTGTCAG 464 ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||| Sbjct 364 CCGGAGAACGGTGGCGTTACTGAGACGGTTCTTGACGTTCTCAAGATTTCTTCGTATCAG 423 Query 465 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGTggaaaaagcgaaggaaagaagaaga-- 522 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| Sbjct 424 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGCGGAAAAAGCAAAGGAAAGAAGGAGAGT 483 Query 523 -a-gaaggagaa-ggaga-GTTATGGAGGGGATCCGATAATTAAAGATCGATTCGGCGGT 578 | | |||||| || | |||| || | || | | | ||| | |||||| Sbjct 484 TATGGAGGAGATCGG-GTTGTTAAAGATCG-ATTTGGCGGTGGA-GATTTAG-CGGCGGA 539 Query 579 GC-GGAGGAGGAGGAGG-GG-----ATAGTGAAGAGGTTGAAAACGAAGTTCACGGCGGA 631 | |||||||||||||| || | ||||||||| ||||| |||||||| |||||||| Sbjct 540 GGAGGAGGAGGAGGAGGAGGTGGGGAGAGTGAAGAGATTGAAGACGAAGTTTACGGCGGA 599 Query 632 GCAAACGGAGAAAATGAGGGATTATGCGGAGAAGCTTCGGTGGAAGGTGAGACCTGAGAG 691 ||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| Sbjct 600 GCAGACGGAGAAAATGAGGGGTTACGCGGAGAAGCTACGGTGGAAGGTGAGACCTGAGAA 659 Query 692 GCAG-GAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTAGGA 750 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 G-AGAGAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTAGGA 718 Query 751 TTTGGATGAATAATCACAAGGATAAAATTATAATTGATGAATGATTATTTACCAAACT 808 |||||||||| |||||||| ||||| | | | ||| ||||||||||||||||||| Sbjct 719 TTTGGATGAACAATCACAAAGATAAGA--AC--T-GATTAATGATTATTTACCAAACT 771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36483631569 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5