BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42780.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948961 jgi|Araly1|948961|scaffold_800848.1 863 0.0
> Ahg948961 jgi|Araly1|948961|scaffold_800848.1
Length=771
Score = 863 bits (467), Expect = 0.0
Identities = 679/778 (87%), Gaps = 27/778 (3%)
Strand=Plus/Plus
Query 48 TCTTCATCATCATCATCAATGGATGAG---ATAAAACCAAAGAAAGAAGAGAATTCCAAA 104
||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 4 TCTTCTTCATCATCATCAATGGATGAGATAATAAAACCAAAGAAAGAAGAAAACTCCAAA 63
Query 105 CGACGTCGTAACGTCAAACCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCTTCCA 164
|| |||||||| | || | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 64 CGTCGTCGTAATGCCACAGCCATTTGCCGTGAAACTGGAGACCACGTCCATTATCCTCCA 123
Query 165 ACATGCAAAACCAAGCCCAAACCCACGCGTACTCATCACGCGCCACCACCGATCCTCGAC 224
||| ||| |||||| |||||| |||||||| ||||||||||||| || |||||||||||
Sbjct 124 ACACGCAGAACCAAACCCAAATCCACGCGTGCTCATCACGCGCCCCCGCCGATCCTCGAA 183
Query 225 TCAATCTTCAAAGTCACTCACAAGCCACACTACTACGAATGCAGGAAGAATCACGCCGCT 284
|| ||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 TCGATCTTAAAAGTTAATCACAAGCCACACTACGGTGAATGCAGGAAGAATCACGCCGCT 243
Query 285 GATATCGGAACCACCGCTTACGACGGCTGCGGCGAGTTTGTTAGCTCCACCGGTGAAGAA 344
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 244 GATATCGGAACCACCGCTTACGATGGCTGTGGCGAGTTTGTTAGCTCCACCGGAGAAGAA 303
Query 345 GATTCTTTAAACTGCGCCGCATGTGGCTGTCACCGTAACTTCCACCGTGAAGAGTTAATC 404
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct 304 GATTCTTTAAACTGCGCCGCATGCGGCTGTCACCGGAACTTCCACCGTGAAGAGTCCATC 363
Query 405 CCGGAGAACGGCGGCGTTACTGAGACGGTTCTTGAAGTTCTCAAGATTTCATCGTGTCAG 464
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 364 CCGGAGAACGGTGGCGTTACTGAGACGGTTCTTGACGTTCTCAAGATTTCTTCGTATCAG 423
Query 465 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGTggaaaaagcgaaggaaagaagaaga-- 522
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 424 TTTCGTCGGATCTTTTGCTCACCTTACGGCGGCGGAAAAAGCAAAGGAAAGAAGGAGAGT 483
Query 523 -a-gaaggagaa-ggaga-GTTATGGAGGGGATCCGATAATTAAAGATCGATTCGGCGGT 578
| | |||||| || | |||| || | || | | | ||| | ||||||
Sbjct 484 TATGGAGGAGATCGG-GTTGTTAAAGATCG-ATTTGGCGGTGGA-GATTTAG-CGGCGGA 539
Query 579 GC-GGAGGAGGAGGAGG-GG-----ATAGTGAAGAGGTTGAAAACGAAGTTCACGGCGGA 631
| |||||||||||||| || | ||||||||| ||||| |||||||| ||||||||
Sbjct 540 GGAGGAGGAGGAGGAGGAGGTGGGGAGAGTGAAGAGATTGAAGACGAAGTTTACGGCGGA 599
Query 632 GCAAACGGAGAAAATGAGGGATTATGCGGAGAAGCTTCGGTGGAAGGTGAGACCTGAGAG 691
||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 600 GCAGACGGAGAAAATGAGGGGTTACGCGGAGAAGCTACGGTGGAAGGTGAGACCTGAGAA 659
Query 692 GCAG-GAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTAGGA 750
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 G-AGAGAGGAGGTTGAAGAGTTTTGTGTAGAGATTGGAGTGAATCGGAAGAATTTTAGGA 718
Query 751 TTTGGATGAATAATCACAAGGATAAAATTATAATTGATGAATGATTATTTACCAAACT 808
|||||||||| |||||||| ||||| | | | ||| |||||||||||||||||||
Sbjct 719 TTTGGATGAACAATCACAAAGATAAGA--AC--T-GATTAATGATTATTTACCAAACT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5