BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42785.1
Length=595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494743 jgi|Araly1|494743|fgenesh2_kg.8__559__AT5G42785.1 682 0.0
> Ahg494743 jgi|Araly1|494743|fgenesh2_kg.8__559__AT5G42785.1
Length=547
Score = 682 bits (369), Expect = 0.0
Identities = 491/550 (89%), Gaps = 7/550 (1%)
Strand=Plus/Plus
Query 1 ACCATTTTTGTATTTTGTGGTTTATTATTAAGGATGAAACAAAGATCGATGGTTTGGTCA 60
|||||||||||||||||||||| | |||||||||||||||||| ||| || ||||||||
Sbjct 1 ACCATTTTTGTATTTTGTGGTTGA-TATTAAGGATGAAACAAACATCAAT-CTTTGGTCA 58
Query 61 G---AAGAAAATTAAATTGTTGTTGAGAAATGAAAGGAAGGGCCTACGTAATGATCTTCT 117
| || |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 GAAAAAAAAAAATAAATTGTCGTTGAGAAATGAAAGGAAGGGCCTACGTAATGATCTTCT 118
Query 118 TCTTCTGGGCTCTTCTCACCATTATCACCCCAATGCTTGTTAGCTGGTCTCAATCTCTCA 177
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 119 TCTTCTGGGCTCTTCTCACAATAATCACCCCAATGCTTGTTAGCTGGTCTCAAGCTCTCA 178
Query 178 AAAATCTTCCACCACTCTCTAATGATCAAGAACAAAAAATCAAGGACTCTGGTCCAAGAA 237
|||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||
Sbjct 179 AAAATCTTCCACCACTCTCTCATGATCAAGAACAAAAAATCAAAGACACCAGTCCAAGGC 238
Query 238 GAATGATGGGATATTCAGAAGAAATGCATTTGGCACAAGAGTTTGTTAGTCACGTAGAAG 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 239 GAATGATGGGATATACAGAAGAAATGCATTTGGCACAAGAGTTTGTTAGTCACATAAAAG 298
Query 298 AAGAGAAGTTGATGATGGAGCCGTCAATGGCGCCAACGCCTGAAGATAACCATGTTATGC 357
|||||||||||||||||| |||||| |||||||| || ||||||||||||| ||||| ||
Sbjct 299 AAGAGAAGTTGATGATGGTGCCGTCCATGGCGCCGACTCCTGAAGATAACCCTGTTACGC 358
Query 358 CTTCACTATCTTCCTTGCGGATAAAACAACAAGAAGGATTAGTCGCTAAACGGGCACATC 417
|||| || ||| |||||| | |||||||||||| |||||||||| | |||| |||||||
Sbjct 359 TTTCATTACCTTTCTTGCGAAAAAAACAACAAGACGGATTAGTCGTTGAACGTGCACATC 418
Query 418 CCATGAGATTGCGATGATCTTAAAGGAA-TTAtttctttctttctttctttttttATTTC 476
|||| ||||||| || | ||||| ||| || ||||||| ||| ||||||| |||||||
Sbjct 419 CCATTAGATTGCAATAAG-TTAAAAGAAATTCTTTCTTTTTTTTTTTCTTTGTTTATTTT 477
Query 477 GGCGATTATCTAAATTGTCCTCTTTGATCAAGTAAGTGTTCATAATGACTCAGATATATA 536
|||||||||||| || || ||||||||||||||||||||||||||||||| |||||||
Sbjct 478 GGCGATTATCTACATCATCTTCTTTGATCAAGTAAGTGTTCATAATGACTCCGATATATT 537
Query 537 TTTTTTACTT 546
||||||||||
Sbjct 538 TTTTTTACTT 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21786841319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5