BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42790.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948958 jgi|Araly1|948958|scaffold_800845.1 1367 0.0
Ahg473874 jgi|Araly1|473874|fgenesh2_kg.1__3828__AT1G47250.1 817 0.0
> Ahg948958 jgi|Araly1|948958|scaffold_800845.1
Length=877
Score = 1367 bits (740), Expect = 0.0
Identities = 838/885 (95%), Gaps = 8/885 (1%)
Strand=Plus/Plus
Query 69 AGAAGAAAGCGAGACGAAGAAGCAAAGATGTTCAGAAACCAATACGACACAGATGTTACG 128
||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 AGAAG-AAG-AAGAAGAAGAAGCAAAAATGTTCAGAAACCAATACGACACAGATGTGACC 58
Query 129 ACATGGAGTCCAACAGGTCGTTTATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAA 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACATGGAGTCCAACAGGTCGTTTATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAA 118
Query 189 GGATCTGCAGCAATTGGACTCAGATCTCGTTCTCATGTCGTTCTCGCTTGTGTTAACAAA 248
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 GGATCTGCAGCAATTGGACTCAGATCTCGTTCCCATGTCGTTCTCGCTTGTGTTAACAAA 178
Query 249 GCTCAATCGGAGCTTTCTTCGCATCAGAGGAAGATCTTTAAAGTCGATGACCATATCGGT 308
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 179 GCTCAATCGGAACTTTCTTCTCATCAGAGGAAGATCTTTAAAGTTGATGACCATATTGGT 238
Query 309 GTTGCAATCGCTGGTCTCACAGCCGACGGTCGTGTATTGTCTCGGTATATGAGATCGGAA 368
|||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||
Sbjct 239 GTTGCAATCGCTGGTCTCACCGCTGATGGTCGTGTTTTGTCTCGGTATATGAGATCGGAA 298
Query 369 TCGATTAATCACTCTTTTACTTATGAGTCTCCTCTTCCTGTTGGTCGTCTCGTTGTTCAT 428
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 299 TCGATTAATCACTCGTTTACTTATGAATCTCCTCTTCCTGTTGGTCGTCTCGTTGTCCAT 358
Query 429 CTTGCTGATAAAGCTCAGGTCTGTACCCAACGATCATGGAAACGACCCTATGGTGTTGGT 488
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCGCTGATAAGGCTCAGGTCTGTACCCAACGATCATGGAAACGACCCTATGGTGTTGGT 418
Query 489 TTGCTGGTAGGTGGATTGGATGAGTCTGGAGCCCACCTTTACTACAACTGTCCCAGCGGA 548
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 419 TTACTGGTAGGTGGATTGGATGAGTCTGGTGCCCATCTTTACTACAACTGTCCAAGCGGA 478
Query 549 AACTACTTCGAGTACCAAGCTTTTGCTATTGGATCCCGTTCCCAAGCAGCAAAGACCTAT 608
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 479 AACTACTTCGAGTACCAAGCTTTTGCTATCGGGTCCCGTTCACAAGCAGCAAAGACCTAT 538
Query 609 CTGGAACGCAGGTTTGAGAGCTTTGGGGATTCTTCTAGAGAAGATCTGATCAAAGATGCT 668
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 CTGGAACGCAGGTTTGAGAGCTTTGGGGATTCTTCAAGAGAAGATCTGATCAAAGATGCT 598
Query 669 ATTTTGGCTGTTAGGGAGACATTGCAAGGGGAAACACTGAAGAGTTCTCTCTGCACAGTC 728
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 ATTTTGGCTGTTAGGGAGACATTGCAAGGAGAAACACTGAAGAGTTCTCTCTGCACAGTC 658
Query 729 GCTATTCTAGGAGTCGATGAACCGTTCCACTTCCTGGACCAGGAAGCAATACAGAAAGTG 788
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 659 GCTATTCTAGGAGTCGATGAACCGTTCCACTTCTTGGACCAGGAAGCGATACAGAAAGTG 718
Query 789 ATCGACACATTTGAGAAAGTGCCAGAGGAAGAGGAAGGAGAAGGCGAGGCTGGTGAGGGT 848
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 719 ATCGACACATTTGAGAAAGTGCCTGAGGAAGAGGAAGGCGAAGGCGAGGCTGGTGAGGGT 778
Query 849 GAGGCCGAAGCTGCCGAGGCTGCACCAGCAGAACGAGGTGGTGGTGTTGCAGGTGACCAA 908
||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 779 GAGGCTGAAGCTGCCGCTGCTGCACCAGCAGAACAAGGTGGTGGTGGTGCAGGTGAC--- 835
Query 909 GACGTGGCTCCAATGGAAATGTAAGGCTTGTGTGTGTAACGCTGG 953
| || |||||||||||||||||||||| |||||||||||||||
Sbjct 836 GT--TG-CTCCAATGGAAATGTAAGGCTTATGTGTGTAACGCTGG 877
> Ahg473874 jgi|Araly1|473874|fgenesh2_kg.1__3828__AT1G47250.1
Length=993
Score = 817 bits (442), Expect = 0.0
Identities = 668/777 (86%), Gaps = 15/777 (2%)
Strand=Plus/Plus
Query 92 AAAGATGTTCAGAAACCAATACGACACAGATGTTACGACATGGAGTCCAACAGGTCGTTT 151
|||||||||||| ||||| |||||||||||||| || |||||| ||||||||||| |
Sbjct 21 AAAGATGTTCAGGAACCAGTACGACACAGATGTGACTACATGGTCACCAACAGGTCGACT 80
Query 152 ATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAAGGATCTGCAGCAATTGGACTCAG 211
||||||||| ||||||||||||||||| ||||||||||| || || ||||| ||||| ||
Sbjct 81 ATTCCAAGTCGAATACGCCATGGAAGCTGTGAAGCAAGGCTCAGCCGCAATCGGACTTAG 140
Query 212 ATCTCGTTCTCATGTCGTTCTCGCTTGTGTTAACAAAGCTCAATCGGAGCTTTCTTCGCA 271
|||||| || |||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct 141 ATCTCGCTCACATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCTCA 200
Query 272 TCAGAGGAAGATCTTTAAAGTCGATGACCATATCGGTGTTGCAATCGCTGGTCTCACAGC 331
||| || |||||||||||||||||||| ||||| |||||||| || |||||||| || ||
Sbjct 201 TCAAAGAAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTAACTGC 260
Query 332 CGACGGTCGTGTAT-TGTCTCGGTATATGAGATCGGAATCGATTAATCACTCTTTTACTT 390
|| |||||||| | ||||||| ||||||||||| || || |||||||||||||||||||
Sbjct 261 TGATGGTCGTGT-TCTGTCTCGTTATATGAGATCTGAGTCTATTAATCACTCTTTTACTT 319
Query 391 ATGAGTCTCCTCTTCCTGTTGGTCGTCTCGTTGTTCATCTTGCTGATAAAGCTCAGGTCT 450
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct 320 ATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCGTCTTGCTGATAAAGCTCAGGTAT 379
Query 451 GTACCCAACGATCATGGAAACGACCCTATGGTGTTGGTTTGCTGGTAGGTGGATTGGATG 510
|||||||||| ||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 380 GTACCCAACGTTCATGGAAAAGGCCTTATGGTGTTGGTTTGCTGGTAGGTGGATTGGACG 439
Query 511 AGTCTGGAGCCCACCTTTACTACAACTGTCCC-AGCGGAAACTACTTCGAGTACCAAGCT 569
|||| ||||| ||||| ||||||||||| ||| |||||||||||||| || || |||||
Sbjct 440 AGTCAGGAGCTCACCTCTACTACAACTG-CCCTAGCGGAAACTACTTTGAATATCAAGCA 498
Query 570 TTTGCTATTGGATCCCGTTCCCAAGCAGC-AAAGACCTATCTGGAACGCAGGTTTGAGAG 628
||||||||||| || ||||| ||||| || ||| || |||||||||||||| || |||||
Sbjct 499 TTTGCTATTGGGTCTCGTTCACAAGCTGCGAAA-ACATATCTGGAACGCAGATTCGAGAG 557
Query 629 CTTTGGGGATTCTTCTAGAGAAGATCTGATCAAAGATGCTATTTTGGCTGTTAGGGAGAC 688
||| || || || ||||||||||||||||||||||||||| |||| | ||||| ||
Sbjct 558 CTTCCAAGAATCATCAAGAGAAGATCTGATCAAAGATGCTATTATGGCCATAAGGGAAAC 617
Query 689 ATTGCAAGGGGAAACACTGAAGAGTTCTCTCTGCACAGTCGCTATTCTAGGAGTCGATGA 748
|||||||||||||||||||||||| || |||||||| || || ||||||||||||||||
Sbjct 618 ATTGCAAGGGGAAACACTGAAGAGCTCACTCTGCACTGTTTCTGTTCTAGGAGTCGATGA 677
Query 749 ACCGTTCCACTTCCTGGACCAGGAA-GCAATACAGAAAG-TGATCGACACATTTGAGAAA 806
||| ||||| ||| ||||||||||| ||| |||| |||| |||| || || ||||||||
Sbjct 678 ACCCTTCCATTTCTTGGACCAGGAAAGCA-TACA-AAAGGTGATTGATACGTTTGAGAAG 735
Query 807 GTGCCAGAGGAAGAGGAAGGA-GAAGGCGAGGCTGGTGAGGGTGAGGCCGAAGCTGC 862
|| || ||||||||||| ||| | || |||| | ||||| || ||||||||||
Sbjct 736 GTTCCCGAGGAAGAGGA-GGATGCTGGTGAGG--G-TGAGGCCGAACCCGAAGCTGC 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5