BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42820.2
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 1565 0.0
Ahg494739 jgi|Araly1|494739|fgenesh2_kg.8__555__AT5G42810.1 252 6e-66
> Ahg494737 jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1
Length=1211
Score = 1565 bits (847), Expect = 0.0
Identities = 959/1014 (95%), Gaps = 4/1014 (0%)
Strand=Plus/Plus
Query 2 ctctctctctctctcCGGCTCACACGAGTCGCTAATCAAATAAACCTAAACCCTAGATCG 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCTCCGGCTCACACGAGTCGCTAATCAAATAACCCTAAACCCTAGATCG 60
Query 62 TGATCGGCAACGGCACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGAAAATCCTC 121
||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 61 TGATCGGAAACAACACCTCCTCGTCGGCGATAGCTTCTCTTCCACTAAAAGCAACTCCTC 120
Query 122 TTCGGTGAGAATGGCAGAGCATTTAGCTTCAATCTTTGGTACTGAAAAGGATAGAGTGAA 181
|||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 121 TTCGGTGAAAATGGCAGAGCATTTGGCTTCAATCTTTGGTACTGAAAAAGATAGAGTGAA 180
Query 182 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTCCGTTTTACTTTAAGATTGGTGCTTGTCGTCACGGTGACCGGTGCTCACGGCTTCA 240
Query 242 TAACCGTCCCACCATCTCGCCGACGCTTCTCCTCTCGAACATGTACCAGAGACCTGACAT 301
|||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 241 TAACCGTCCCACTATCTCCCCGACGCTCCTTCTCTCGAACATGTATCAGAGACCTGACAT 300
Query 302 GATAACTCCAGGTGTGGATCCTCAGGGACAGCCGTTAGACCCGAGTAAGATCCAAGACCA 361
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 301 GATAACTCCAGGTGTGGATCCTCAGGGTCAGCCATTAGACCCGAGTAAGATCCAAGACCA 360
Query 362 CTTTGAGGATTTCTACGAAGATATTTTCGAAGAACTCAACAAGTTTGGTGAAGTGGAGAG 421
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CTTTGAGGATTTCTATGAAGATATTTTCGAAGAACTTAACAAGTTTGGTGAAGTGGAGAG 420
Query 422 TCTCAATGTTTGTGACAATCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 481
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCAATGTTTGTGATAACCTTGCTGATCATATGATTGGGAATGTGTATGTTCTGTTTAA 480
Query 482 GGAGGAGGATCACGCAGCTGCTGCGTTGCAGGCTTTGCAGGGGAGATTTTATTCCGGTCG 541
||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || || ||
Sbjct 481 GGAGGAGGATCACGCTGCTGCTGCGTTGCAGGCTTTGCAAGGGAGGTTTTACTCTGGACG 540
Query 542 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTTAGGGAAGCTACTTGTAGGCAGTA 601
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TCCTATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGGGAAGCTACTTGTAGGCAGTA 600
Query 602 TGAAGAAAACAGCTGTAACCGTGGTGGGTACTGTAATTTCATGCATGTGAAGCAGATTTC 661
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TGAAGAAAACAGTTGTAACCGTGGTGGGTATTGTAATTTCATGCATGTGAAGCAGATTTC 660
Query 662 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGTTCATACCGTCGGGGAAGCAG 721
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 661 GAGGGAGCTTAGGAGGAAATTGTTTGGGAGGTATCGTCGGTCATACCGCCGGGGAAGTAG 720
Query 722 AAGTCGAAGCAGGAGTATAAGCCCTCGACGTAagagagagcattcgcgagagcgagagag 781
||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 721 AAGCCGGAGCAGGAGTATAAGCCCTCGACGCAAGAGAGAGCATTCGCGGGAGCGAGAGAG 780
Query 782 agGGGACGTT-AGGGACCGTGACCGGCATGGAAATGGGAAAAGGAGCAGTGATAGATCAG 840
|||||| || |||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 781 AGGGGAT-TTGAGGGACCGTGACCGCCATGGAAATGGGAAACGAAGCAGTGATAGATCAG 839
Query 841 AGAGGCATGATCGGGATGGTGGTGGAAGGAGGAGACATGGAAGCCCGAAACGGAGCAGAA 900
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 AGAGGCATGATCGAGATGGTGGTGGAAGAAGGAGACATGGAAGCCCGAAACGGAGCAGAA 899
Query 901 GCCCACGAAATGTGAGAGAAGGAAGCGAGGAAAGGAGGGCGAGAATTGAGCAATGGAACC 960
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 900 GTCCACGAAATGTGAGAGAAGGAAGTGAGGAAAGGAGGGCAAGAATTGAGCAATGGAACC 959
Query 961 GAGAACGTGATGAGGGAGTTTAAGGGTA-TCGTTTGGGCTGATTACTTCATAAA 1013
||||||| |||||||||||||||| ||| | |||||| |||||| ||||| |||
Sbjct 960 GAGAACGCGATGAGGGAGTTTAAGAGTAAT-GTTTGGACTGATTGCTTCAGAAA 1012
> Ahg494739 jgi|Araly1|494739|fgenesh2_kg.8__555__AT5G42810.1
Length=1714
Score = 252 bits (136), Expect = 6e-66
Identities = 163/176 (93%), Gaps = 1/176 (1%)
Strand=Plus/Minus
Query 1319 ATAGTTCCAACAAATTTTAAGTTTAAGAAATGAACATTCATCTTTTAGGGCTTTCTTTAT 1378
|||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1714 ATAGTTCCAATAAATTTCAAGTTTAGGAAATGAACATTCATCTTTTAGGGCTTTCTTTAT 1655
Query 1379 TATGTTCTACAACAACAGTAACCaaaaaaaaGAGAGCTAGTGGTATTGAGACGATACATG 1438
|||||| ||||||||||||||| |||||||| | ||||||||||||||||||||| ||||
Sbjct 1654 TATGTTTTACAACAACAGTAACGAAAAAAAAAACAGCTAGTGGTATTGAGACGATCCATG 1595
Query 1439 ACTTAGCTGTGGGAAGGTTTTGAGTTGCCGATTTGTTCTGCCGTGTTTTCG-GCTT 1493
||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||
Sbjct 1594 ACTTAGCTGTGCGAAGGTTTTGAGTCGCCGATTTGTTCTGCCACGTTTTCGAGCTT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5