BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42825.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944183 jgi|Araly1|944183|scaffold_700412.1 268 3e-71
> Ahg944183 jgi|Araly1|944183|scaffold_700412.1
Length=247
Score = 268 bits (145), Expect = 3e-71
Identities = 219/253 (87%), Gaps = 11/253 (4%)
Strand=Plus/Plus
Query 61 GGAAAGCTTTTTGTCTC--CA--CCTACAAGAA-TTTTCCGATGATAGCCGTTCCAAATA 115
||||||||||| ||||| || || || ||| ||||||| | |||||||| || | |
Sbjct 1 GGAAAGCTTTTGGTCTCTGCATGCCGACCGGAATTTTTCCGGTAATAGCCGTCCCGAGTG 60
Query 116 ATTTGGGCTTTTGCCCGGTATCTTCTAGCTCTTTTAGTGGAGATGACCGGTTCCCGTACG 175
| | ||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||
Sbjct 61 ACTCGGGCTTTTGCCCGGTATCTTCCAGCTCCTTTAGTGGAGATGACCGGTTCCTGTTCG 120
Query 176 GCAAATCCTGCTTTCATAAGAGGTTTTGGCCGCTTGTATCCTTGCTCGTAGTCAATCAGT 235
||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCAAATCCTGCTTCCATGAGAGGTTTTGGCCGCTTGTATCCTTGCTCGTAGTCGATCAGT 180
Query 236 TTTATGCTGATTGCTTTGATATTTTAGTTTTGTTTTTCAATAAATCTCAACAGATTTGAG 295
||||| |||||||||||| | |||| || ||||| |||||||| |||| |||||||||
Sbjct 181 TTTATACTGATTGCTTTG-T-TTTT--TTA-GTTTT-CAATAAATTTCAATAGATTTGAG 234
Query 296 ATGGTAATTAGTT 308
|||||||||||||
Sbjct 235 ATGGTAATTAGTT 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5