BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42830.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948948 jgi|Araly1|948948|scaffold_800835.1 1923 0.0
Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1 398 8e-110
> Ahg948948 jgi|Araly1|948948|scaffold_800835.1
Length=1367
Score = 1923 bits (1041), Expect = 0.0
Identities = 1271/1377 (92%), Gaps = 35/1377 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCTTCATCTTCAGTAAAAATCGTCTCGAAAAGCTTCGTGAAACCCAAAACCTTA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 21 ATGGATTCTTCATCTTCAGTAAAAATCGTCTCGAAATGCTTCGTGAAACCCAAAACCATA 80
Query 61 CCAGAAGAATCAAAGCAACCATACTATTTATCTCCATGGGACTACGCAATGCTCTCTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCAGAAGAATCAAAGCAACCATACTATTTATCTCCATGGGACTACGCAATGCTCTCTGTT 140
Query 121 CAGTACATCCAAAAAGGTCTTCTCTTTCACAAGCCACCACTTGACTCCATTGACACTCTT 180
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 141 CAATACATCCAAAAAGGTCTTCTCTTTCACAAGCCATCACTTGACTCCATTGACACT-TT 199
Query 181 -CTTGAGAAGCTAAAAGATTCTCTGGCCGTCACACTAGTCCATTTCTACCCTCTCGCGGG 239
||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 200 GCTTGAGAAGCTAAGAGAGTCTCTGGCTGTCACACTAGTCCATTTCTACCCTCTCGCGGG 259
Query 240 TCGCCTCTCATCGTTAACAACGGAAAAACCGAAATCTTACTCTGTTTTCGTTGATTGTAA 299
||| ||||| ||||| ||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 260 TCGTCTCTCGTCGTTGACAACCGAAAATCCGAAATCTTACTCTGTTTTTGTTGATTGTAA 319
Query 300 CGATAGCCCTGGCGCGGGGTTTATCTACGCGACCTCAGATTTATGTATAAAAGATATTGT 359
||| ||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 320 CGAGAGCCCTGGCGCTGGGTTTATCTACGCGACCTCAGATTTATGTGTAGAAGATATTGT 379
Query 360 GGGTGCTAAGTATGTCCCTTCAATTGTTCAATCTTTCTTTGACCATCACAAAGCTGTGAA 419
||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 380 GGGTGCTAAGTATGTTCCTTCGATTGTTCATTCTTTCTTTGACCATCACAGAGCTGTGAA 439
Query 420 TCATGATGGACACACCATGAGCCTCTTATCTGTCCAGGTGACAGAATTGGTAGATGGAAT 479
|||||||||||||||| |||| | | ||| | | | | | || | |||
Sbjct 440 TCATGATGGACACACCCTGAG-C-C---TCT-T--A--T--C---A---GTCCA--GAA- 478
Query 480 TTTCATAGGACTGTCTATGAACCATGCGATGGGAGACGGTACTGCGTTCTGGAAGTTCTT 539
| | ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||
Sbjct 479 --T--T-GGACTGTCTATGAACCATGTGATGGGAGACGGTACTGCCTTCTGGAAG-TCTT 532
Query 540 TACCGCATGGTCCGAAATCTTCCAAGGACAAGAGAGCAACCAAAACGATGACTTGTGTCT 599
|||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct 533 TACCGCTTGGTCCGAAATCTTCCAAGGACAAGAAAGCAACAAAAACAATGACTTGTGTCT 592
Query 600 TAAGAATCCACCCGTGTTGAAGCGTTACATCCCTGAAGGATACGGTCCTCTATTCAGCCT 659
||| |||||||| || || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 593 TAAAAATCCACCGGTCTTAAAGCGTTACATCCCTGAAGGATACGGTCCTCTCTTCAGCCT 652
Query 660 TCCATATAGTCATCCAGATGAATTTATCAGAACCTACGAATCTCCAATTCTCAAGGAGAG 719
||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 653 TCCCTATAGCCATCCTGATGAATTTATCAGAACCTACGAATCTCCAGTTCTCAAGGAAAG 712
Query 720 AATGTTCTGTTTCTCATCAGAAACCATAAGAATGCTTAAAACAAGGGTCAACCAAATATG 779
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 713 AATGTTCTGTTTCTCATCAGAAACCATAAGATTGCTTAAAGCAAAGGTCAACCAAATATG 772
Query 780 CGGAACAACCTCCATCTCATCTTTCCAATCGCTAACCGCGGTTATATGGAGATGCATAAC 839
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 773 CGGAACTACCTCCATTTCATCTTTCCAGTCGCTAACCGCGGTTATATGGAGATGCATAAC 832
Query 840 AAGGGCGA-GGAGATTACCTCTCGATCGAGAAACAAGTTGTAGAGTTGCTGCTGACAACA 898
|||||| | |||||||||| ||||| |||||||||||||||||| |||||||||||||||
Sbjct 833 AAGGGC-ACGGAGATTACCCCTCGACCGAGAAACAAGTTGTAGAATTGCTGCTGACAACA 891
Query 899 GAGGAAGAATGTATCCACCGCTTCACAAGGATTACTTCGGAAACTGCCTCTCTGCTTTGA 958
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 892 GAGGAAGAATGTATCCACCGCTTCACAAGGAGTACTTTGGAAACTGCCTCTCTTCTTTGA 951
Query 959 GAACGGCTGCAAAAGCTGGTGAACT-ATTGGAGAATGATCTTGGATTTGCTGCTTTGAAA 1017
|||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 952 GAACGGCTGCAAAAGCTGGTGAGCTGA-TGGAGAATGATCTTGGATTTGCTGCTTTGAAA 1010
Query 1018 GTGCATCAAGCAGTAGCTGAACATACGAGCGAAAAGGTATCTCAAATGATTGATCAATGG 1077
||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1011 GTGCATCAAGCGGTAGCTGAACATACTAGTGAAAAAGTATCTCAAATGATTGATCAATGG 1070
Query 1078 CTAAAGTCTCCTTAT-ATTTACCATATTGATCGGCTATTTGAACCGATGAGCGTTATGAT 1136
||||||| |||| | |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1071 TTAAAGTCCCCTT-TCATTTACCATATTGATCGGCTTTTTGAACCGATGAGCGTTGTGAT 1129
Query 1137 GGGAAGCTCGCCGAGGTTTAATAAGTATGGTTGTGAATTTGGGTTGGGAAAAGGAGTGAC 1196
||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1130 GGGAAGCTCACCGAGGTTTAACAAGTATGGTTGTGAATTTGGGATGGGAAAAGGAGTGAC 1189
Query 1197 GCTTAGAAGTGGCTATGCGCATAAGTTCGATGGAAAGGTATCTGCTTACCCGGGAAGAGA 1256
|| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1190 ACTAAGAAGTGGCTACGCGCATAAGTTTGATGGAAAGGTATCTGCTTACCCGGGAAGAGA 1249
Query 1257 AGGAGGGGGAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AGGAGGGGGAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGA 1309
Query 1317 ATCAGATGAAGAGTTCATGTCACTTGTTTCTCTTTGAAAATTTACCAATTTCTTCCA 1373
||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1310 ATCAGATGAAGAGTTTATGTCACTTGTTTCTCTTTAAAAAATTACCAATTTCTTCCA 1366
> Ahg487616 jgi|Araly1|487616|fgenesh2_kg.6__750__AT5G07850.1
Length=1370
Score = 398 bits (215), Expect = 8e-110
Identities = 1020/1393 (73%), Gaps = 117/1393 (8%)
Strand=Plus/Plus
Query 8 CTTCATCTTCAGTAAAAATCGTCTCGAAAAGCTTCGTGAAACCCAAAACCTTACCAGAAG 67
||||||| |||||||||||| || || |||| || |||||||||||| | || |||
Sbjct 11 CTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAACCATCCCCGAAA 70
Query 68 AAT-CAAAGCAACCATACTATTTATCTCCATGGGA-CTACGCAATGCTCTCTGTTCAGTA 125
||| |||| | |||||| ||||||| || | ||| || | ||||||||| | || ||
Sbjct 71 AATGGAAAG-AGCCATACCATTTATCACCCTTGGATCT-TGTGATGCTCTCTATGCATTA 128
Query 126 -CATCCAAAAAGGTCTTCTC-TT-TC--A-C--A--A-GC---C--ACCACTTGACTCCA 169
| ||||||| ||||||||| || || | | | | || | | || || | ||
Sbjct 129 TC-TCCAAAATGGTCTTCTCTTTCTCAAATCTGATGATGCAATCAAAACAAAAGATTTCA 187
Query 170 TTGACACTCTT-CTTGAGAAGCTAAAAGATTCTCTGGCCGTCACACTAGTCCATTTCTAC 228
| || ||| || || | ||||| | ||||||| |||| || || || |||||||| ||
Sbjct 188 TGGAGACT-TTGCTACAAAAGCTTAGAGATTCTATGGCTGTAACCCTTGTCCATTTTTAT 246
Query 229 CCTCTCGCGGGTCGCCTCT-CATCGTTAACAACGGAAAAACCGAAATCTTACTCTGT-TT 286
|| ||||||||||| |||| || | |||| ||| || || |||| ||| ||||| || ||
Sbjct 247 CCGCTCGCGGGTCGTCTCTCCA-CTTTAAAAACCGACAATCCGAGATCCTACTCGGTGTT 305
Query 287 TCGTTGATTGTAACGATAG-CCCTGGCGCGGGGTTTATCTACGCGACCTCAGATTTATGT 345
| || |||||||| || || ||| || || || |||||| || | || ||| || ||
Sbjct 306 T-GTGGATTGTAATGACAGTCCC-GGGGCTGGATTTATCCGTGCTAAATCGGATCTAAGT 363
Query 346 ATAAAAGATATTG-TGGGTGCTAAGTATGTCCCTTCAATTGTTCAATCTTTCTTTGACCA 404
||| |||||||| || || | || ||||| |||| ||||||||||||||||||||||
Sbjct 364 GTAAGAGATATTGTTGAGT-CCAAATATGTTCCTTTGGTTGTTCAATCTTTCTTTGACCA 422
Query 405 TCACAAAGCTGTGAATCATGATGGACACACCATGAGCCTCTTATCTGTCCAGGTGACAGA 464
|| ||||| |||| |||||||| ||||||||||| ||||| || ||| |||| |||||
Sbjct 423 CCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCTCTTCTCAGTCAAGGTAACAGA 482
Query 465 ATTGGTAGATGGAATTTTCATAGGACTGTCTA-TGAACCATGC-GATGGGAGACGGTA-C 521
||||||||||||| | ||||||||| |||| | |||| || || | ||||||| || |
Sbjct 483 ATTGGTAGATGGAGTGTTCATAGGATTGTC-ATTGAATCACGCTG-TGGGAGATGG-AGG 539
Query 522 TGCGTTCTGGAAGTTCTTT-ACCGCATGGTCCGAAATCTTCCAA-GGACAAGAGAGCAAC 579
| | || ||| | || ||| | | | | ||| || || || ||| | || | ||| ||
Sbjct 540 TACATTATGGCA-TTTTTTCAACTCTTTGTCGGAGAT-TTTCAATGCAC-A-AGA--AA- 592
Query 580 CAAAACGATGACTTG-TGTCTTAAGAATCCACCCGT-GTTGAAGCGTTACATCCCTGAAG 637
| |||| ||||| | ||| |||||||| || || || | |||| | ||| |||
Sbjct 593 C----CGATAACTTGCT-TCTCAAGAATCCTCCAGTACTTTCA-CGTTGGTTTCCTAAAG 646
Query 638 GATACGGTCCTCTATT-CAGCCTTCCATAT-AGTCATC-CAGATGAATTTATCAGAACC- 693
| ||||||||| | || ||||||||| | | | ||| | | |||||||| || | ||
Sbjct 647 GGTACGGTCCTGT-TTACAGCCTTCC-TTTCACTCA-CTCTGATGAATTCAT-TG-GCCG 701
Query 694 -TACGAATCTCCAATTC-TCAAGGAGAGAATGTTCTGTTTCTCATCAGAAACCATAAGAA 751
| |||||| || || | ||||||||||| ||| ||||||||| ||||| |||| |
Sbjct 702 ATTCGAATCACC-GGTCTTGAAGGAGAGAATATTCCATTTCTCATCTGAAACAATAA-CA 759
Query 752 TGC-TT-AAAAC-AAGGGTCAACCAA-ATATGCGGAACAACCTCCATCTCATCTTTCCAA 807
| | || ||| | |||| | || ||| | |||| ||||||| | || || ||||| |||
Sbjct 760 T-CATTGAAATCAAAGGCT-AATCAAGA-ATGCAGAACAACAACTATTTCTTCTTTTCAA 816
Query 808 TCGCTAACCGCGGTTATATGGAGATGCATAACAAGGGCGAGGAGATTACC-TCTCGATCG 866
|| |||| || ||||||||||||| || ||||| || || | |||||| | | ||||
Sbjct 817 GCGTTAACTGCATTTATATGGAGATGTATCACAAGAGCAAGAAAATTACCTTAT-GATC- 874
Query 867 A-GAAACAAGTTGTAGAGTTGCTGCTGACAACAGAGGAAGAA-TGTATCCACCGCTT-CA 923
| |||| ||||||| |||| ||| |||| || || || || ||||||| || |
Sbjct 875 ATGAAATTCGTTGTAGCCTTGCCGCTAACAATGGAACAA-AATTGGATCCACC-ATTGC- 931
Query 924 CAAGGA-TTACTTCGGAAACTGCCTCTCTGCT-T--TG-AGAACGGCTGCAAAAGCTGGT 978
| || || || || || || | |||||| | | ||| | | | | | | ||
Sbjct 932 CTTTGAGCTATTTTGGTAATTGTATTTCTGCTATAAAGTCGAA-GACCGTTACATCCAGT 990
Query 979 GAACTATTGGAGAATGATCTT-GGATTTGCTGCTTTGAAAGTGCATCAAGCAGTAG-CT- 1035
|| ||| | || |||||| || |||| |||||||||||| ||||| |||| || | |
Sbjct 991 GAGCTACTAGAAAATGAT-TTGGGATGGGCTGCTTTGAAAATGCATAAAGCTGT-GATTG 1048
Query 1036 GAACATACGAGCGAAAAGGTATC-TCAAATGATTGATCAA-TGGCT-AAAGTC-TCCTTA 1091
||| | || || ||| |||| || | | || || || ||| | ||| || | ||||
Sbjct 1049 GAA-ACACTAGTGAAGAGGTCTCGGC-GACAATCGA-AAATTGGATGAAA-TCAT-CTTA 1103
Query 1092 TATTTACCATATT-GATCGGCTATTT-GAACCGAT-GAGCGTT-ATGATGGGAAGCTCGC 1147
| ||| |||| || || ||| ||| | | | || | | ||| | || ||||||||||
Sbjct 1104 TGTTTTCCAT-TTAGAAAAGCT-TTTGGGAGCAATGGTG-GTTCA-CATTGGAAGCTCGC 1159
Query 1148 CGAGGTTTAATAAGTATGGTTGTGAATTTGGGTTGGGAAAAG-GAG-TGACGCTTAGAAG 1205
|||||||||| | ||||| || || |||||| ||||||||| | | || || |||||||
Sbjct 1160 CGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAAAGCG-GTTG-CGGTTAGAAG 1217
Query 1206 TGGCTATGCGCATAAGTTCGAT-GGAAAGGTATCTGCTTACCCGGGAAGAGAAGGAGGGG 1264
|| |||| | |||||| ||| ||||| |||| ||||| | |||||||||||||| |
Sbjct 1218 CGGTTATGGGGGTAAGTTTGATGGGAAA-ATATCAGCTTATGCAGGAAGAGAAGGAGGAG 1276
Query 1265 GAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGAATCAGATG 1324
|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1277 GAAGCATAGATTTGGAAGTATGTCTACTTCCAGAGTTTATGGAAGCTTTGGAATCAGATG 1336
Query 1325 AAGAGTTCATGTC 1337
||||||| |||||
Sbjct 1337 AAGAGTTTATGTC 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5