BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42850.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948944 jgi|Araly1|948944|scaffold_800831.1 599 1e-170
Ahg938873 jgi|Araly1|938873|scaffold_503064.1 198 4e-50
> Ahg948944 jgi|Araly1|948944|scaffold_800831.1
Length=449
Score = 599 bits (324), Expect = 1e-170
Identities = 402/440 (91%), Gaps = 4/440 (1%)
Strand=Plus/Plus
Query 33 GTCGGagaagaagaagaagaaagaTGACGTTGAAGAAGGTGGACGCGAATCCATCAACCT 92
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTCGGAGAAGAAGAAGAAGAACGATGACGTTGAAGAAGCTGGACGCGAATCCATCAACCC 60
Query 93 TGGAATC-GAGTTTACAAGAACTGAAATCAGACGAAA-CAAGCCGTAGCAAGATCAATTT 150
| ||||| | | || || || ||||||| ||||||| | | |||||||||||||||||
Sbjct 61 TAGAATCGGCG-TTGGAACAATTGAAATCGGACGAAACCTA-TCGTAGCAAGATCAATTT 118
Query 151 CATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGT 210
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 CATACTCTTCCTCGCCGACAACGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGT 178
Query 211 TAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAAGCTAAT 270
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 179 TAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAATCTTAT 238
Query 271 TCGTGCTTACGCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGA 330
|||||| ||||||||||| |||||||||||| || |||||| |||||| |||||||| ||
Sbjct 239 TCGTGCATACGCCGGAGATAGACCGACGTGGAGGGCTCCGGGGCATCCGTGGAGAGTCGA 298
Query 331 TTCTCGGTTTAAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAA 390
| | |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 TCCACGGTTTAAGCTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACGCTGTTAA 358
Query 391 AGGACGTCTTGAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACC 450
||||| ||||| ||||||||||||||| ||||||||||||| || ||||||||||| ||
Sbjct 359 GGGACGGCTTGAGGATCATCAAGCTCACATTCCTCACTTGATCCTGCCCCTTCTTGCGCC 418
Query 451 ATCCACTTGATTTGATCGAT 470
||| ||||||||||||||||
Sbjct 419 ATCGACTTGATTTGATCGAT 438
> Ahg938873 jgi|Araly1|938873|scaffold_503064.1
Length=448
Score = 198 bits (107), Expect = 4e-50
Identities = 164/190 (86%), Gaps = 9/190 (5%)
Strand=Plus/Plus
Query 281 GCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGATTCTCGGTTT 340
||||| ||||||||| ||||| | |||||| ||||| | |||||||||||||||||||||
Sbjct 255 GCCGGTGACAGACCGGCGTGGAGAACTCCGACGCATTCGTGGAGAGTTGATTCTCGGTTT 314
Query 341 AAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAAGGACGTCTT 400
|| || | |||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 315 AAGCTCATCGGAGTGCCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAGGGACGGCTT 374
Query 401 GAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACCATCCACTTGA 460
|| ||||||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 375 GAGGATCATCAAGCTCACCT---------GATTCTGCCCCTTCTTGCGCCATCCACTTGA 425
Query 461 TTTGATCGAT 470
|| |||||||
Sbjct 426 TTCGATCGAT 435
Score = 124 bits (67), Expect = 7e-28
Identities = 69/70 (99%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 134 CGTAGCAAGATCAATTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGC 193
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CGTAGCAAGATCAGTTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGC 245
Query 194 TGGTGTCCAG 203
||||||||||
Sbjct 246 TGGTGTCCAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5