BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42860.1
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494732 jgi|Araly1|494732|fgenesh2_kg.8__548__AT5G42860.1 1814 0.0
> Ahg494732 jgi|Araly1|494732|fgenesh2_kg.8__548__AT5G42860.1
Length=1218
Score = 1814 bits (982), Expect = 0.0
Identities = 1134/1206 (94%), Gaps = 15/1206 (1%)
Strand=Plus/Plus
Query 20 TCTCATCTTCTACTTGTTCATCTTCCATTCCAATCTCAAGATGCACGCGAAGACCGACTC 79
||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 27 TCTCATCTTCTGCTTCTTCATCTTCCATTCCAATCTCAAGATGCACGCCAAAACCGACTC 86
Query 80 CGAGGTGACAAGCCTCTCAGCTTCATCGCCGACTAGATCTCCCCGTCGACCAGCCTACTT 139
|||||||||||||||||||||||||| || |||||||||||||| || || || |||||
Sbjct 87 AGAGGTGACAAGCCTCTCAGCTTCATCACCAACTAGATCTCCCCGCCGTCCCGCGTACTT 146
Query 140 CGTCCAATCTCCATCACGTGACTCCCACGATGGGGAGAAAACAGCAACATCATTCCACTC 199
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 147 CGTCCAATCTCCATCACGTGACTCTCACGATGGAGAGAAAACAGCAACATCATTCCACTC 206
Query 200 AACACCGGTACTCACCAGCCCGATGGGATCTCCACCACATTCTCACTCTTCCTCAAGCCG 259
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 207 AACACCGGTCCTCACCAGCCCAATGGGATCTCCACCACATTCTCACTCTTCCTCAAGCCG 266
Query 260 CTTCTCCAAGATCAACGGCTCAAAACGTAAGGGCCACGCTGGAGAAAAACAGTTCGCTAT 319
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 267 CTTCTCCAAGATCAATGGCTCAAAACGCAAAGGCCACGCTGGAGAAAAACAGTTCGCTAT 326
Query 320 GATTGAAGAAGAAGGTCTTCTTGATGATGGAGATAGAGAACAAGAAGCTTTGCCTCGTCG 379
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 327 GATTGAAGAAGAAGGTCTTCTTGATGATGGAGATAGAGAACAAGAACCTTTGCCTCGTCG 386
Query 380 ATGTTATGTTTTAGCTTTCATTGTTGGATTCTCTCTACTCTTTGCTTTCTTCTCTTTGAT 439
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 387 ATGTTATGTCTTAGCTTTCATTGTTGGATTCTCTTTGCTCTTTGCTTTCTTCTCTTTGAT 446
Query 440 TCTTTATGCAGCTGCTAAACCTCAGAAACCTAAGATCTCTGTTAAGAGTATAACGTTTGA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 447 TCTTTATGCAGCTGCTAAACCTCAGAAACCTAAGATCTCTGTTAAGAGTATAACGTTCGA 506
Query 500 GCAACTTAAGGTTCAAGCTGGACAAGATGCTGGAGGTATAGGAACTGATATGATCACTAT 559
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 507 GCAACTTAAGGTTCAGGCTGGACAAGATGCGGGAGGTATTGGAACTGATATGATCACGAT 566
Query 560 GAACGCGACACTGAGAATGTTGTACCGTAACACTGGTACTTTCTTTGGTGTTCATGTCAC 619
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 567 GAATGCGACGCTGAGAATGTTGTATCGTAACACTGGTACTTTCTTTGGTGTTCATGTCAC 626
Query 620 TTCTTCTCCGATTGATCTTAGCTTCTCGCAGATCACTATTGGCTCTGGCTCTATTAAGAA 679
||||||||||||||||||||||||||| ||||||||||| || ||||| ||| | |||||
Sbjct 627 TTCTTCTCCGATTGATCTTAGCTTCTCTCAGATCACTATCGGTTCTGGATCTGTCAAGAA 686
Query 680 GTTTTATCAGTCAAGGAAAAGCCAAAGAACAGTGGTGGTGAATGTACTTGGAGACAAGAT 739
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 687 ATTTTATCAGTCAAGAAAAAGCCAAAGAACAGTGGTGGTGAATGTGCTTGGAGACAAGAT 746
Query 740 TCCACTCTATGGAAGTGGCTCAACATTAGTCCCACCACCACCTCCTGCACCAATTCCAAA 799
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 747 TCCTCTCTATGGAAGTGGCTCAACCTTAGTCCCACCACCACCTCCTGCACCAATTCCAAA 806
Query 800 ACCCAAGAAGAAGAAAGGACCTATCGTTATCGTCGAACCACCAGCGCCTCCTGCTCCAGT 859
||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 807 ACCTAAGAAGAAGAAAGGACCCATCGTTATCGTCGAACCACCAGTGCCTCCTGCTCCAGT 866
Query 860 ACCGATGAGGCTAAACTTCACCGTTAGATCTCGAGCTTACGTGTTGGGGAAGTTAGTTCA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 ACCGATGAGGCTAAACTTCACCGTTAGATCTCGAGCTTACGTGTTGGGGAAGTTAGTTCA 926
Query 920 ACCTAAGTTTTACAAGAGAATCGTGTGCTTGATTAATTTCGAACACAAGAAACTCAGTAA 979
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 927 ACCTAAGTTTTACAAGAGAATCGTGTGTTTGATTAATTTCGAACACAAGAAACTCAGTAA 986
Query 980 ACATATTCCCATCACGAATAACTGCACTGTCACATCTATTTAAAAGAAGaaaaaaaTACA 1039
||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| ||
Sbjct 987 ACATATTCCAATCACGAATAACTGCACTGTCACATCTATTTAAAGGG-GAAATAAA--CA 1043
Query 1040 CATGAGAGTGCGGACGGTCTCGTATTGGGTAGTGCGCCTATGGCCCTATACATGTTACAA 1099
|||||||||||| ||||||||||||||||||||| | | | |||||||||||| |
Sbjct 1044 CATGAGAGTGCGAACGGTCTCGTATTGGGTAGTG----T--G-C--TATACATGTTACCA 1094
Query 1100 GGTATTGCGTGTGGCCTACCCCAAAGCAGAAGAATCATCATCAGTGGGTTTCATAAATTT 1159
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1095 GGTAGTGCGTGTGGCCTACCCCAAAGCAGAAGAATCATCATCAGTTGGTTTCATAAATTT 1154
Query 1160 AATTTACGTAATTGGTTTGAGAGATTTT-GTTAATGATACACAGTAAACGAGAAGATTCA 1218
|||||| |||| || |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1155 AATTTATGTAAGTGAATTGAGAGATTTTTGTTAATGATACA--GTAAACGAGAAGATTCA 1212
Query 1219 CAtttt 1224
||||||
Sbjct 1213 CATTTT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5