BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42880.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331112 jgi|Araly1|331112|fgenesh1_pm.C_scaffold_8000455 3197 0.0
Ahg473856 jgi|Araly1|473856|fgenesh2_kg.1__3810__AT1G45545.1 750 0.0
> Ahg331112 jgi|Araly1|331112|fgenesh1_pm.C_scaffold_8000455
Length=2280
Score = 3197 bits (1731), Expect = 0.0
Identities = 2105/2284 (92%), Gaps = 32/2284 (1%)
Strand=Plus/Plus
Query 69 ATGTTGGGCGATGATAAAGATTCAGACGACCTTAATTTATTTCTCAACGCCATTGGTGAA 128
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGTTGGGCGATGACAAAGATTCAGACGACCTTAATTTATTTCTCAATGCCATTGGTGAA 60
Query 129 GCTGGTGATG---AA-G---AA-G-G--TC-CAACGTCTTTCAATGACATCGACTTCTTG 176
|||| |||| || | || | | || | |||||||||||||| || |||||||||
Sbjct 61 ACTGGAGATGAACAAGGTCCAACGAGAATCTCCACGTCTTTCAATGATATAGACTTCTTG 120
Query 177 ACATTCGACGATGAAGATTTACATAATCCATTTCAAGATTGTGAGACAAGTCCTATCAAC 236
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 121 ACATTCGACGATGATGATTTACATAATCCATTTCAAGATTGTGATTCAAGTCCAATCAAC 180
Query 237 GAACCTCCTAAGGTTTATGTTGCACCAAGGGTGATGATAAGTCATCAAGATTCGTTTTCT 296
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACCTTCTAGGGTTTATGTTGCACCAAGGGTGATGATAAGTCATCAAGATTCGTTTTCT 240
Query 297 GAAGATTCAAGAACCGATGTTATCGAAGATGCTAGGATTTTGCCTGCTTCTCCTCGTCTT 356
||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 241 GAAGATTCAAGAATCGATGTTATTGAAGATGCTAGGATTTTGCCTGCTTCCCCTCGTCTT 300
Query 357 AGAGTTCCTGCTTCTCCTCGAGCATTTGTGTATCCGAGATCTGTCGAATCACCTCGTTTT 416
||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||
Sbjct 301 AGAGTTCCTGCTTCTCCTCGAGCTTTTGTGTATCCAAGATCTGTTGAATCGCCTCGTTTC 360
Query 417 GGTTCTCCGAGATCTGTCGAATCGCCTTGTTTCGGGTCTCCGATTGGTGTTATCGATACA 476
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 361 GGTTCTCCGAGATCTGTCGAATCACCTAGTTTCGGGTCTCCTATTGGTGTTATCGATACA 420
Query 477 GCTTCACCTTTCGAATCGGTTAGAGAAGCAGTTTCTAAGTTTGGTGGGATCACAGATTGG 536
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTCGCCTTTCGAATCGGTTAAAGAAGCAGTTTCTAAGTTTGGTGGGATCACAGATTGG 480
Query 537 AAAGCTCATAAGATTCAGACTATAGAGAGACGGAAGATGGTAGATGAAGAGCTTGAGAAG 596
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAAGCTCATAAGATTCAGACAATAGAGAGACGGAAGATGGTAGATGAAGAGCTTGAGAAG 540
Query 597 ATACAAGAAGCAATGCCTGAGTACAAGAGAGAAGCTGAGTTAGCTGAAGAAGCGAAATAC 656
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||
Sbjct 541 ATACAAGAAGCAATGCCTGAGTTCAAGAGAGAAGCTGAGTTAGCTGAAGAGGCGAAACAC 600
Query 657 GATGCGTTGGAGGAGTTAGAGAACACAAAGGGACTCATCGAGGAGCTGAAACTAGAATTG 716
||||||||| ||||| ||||||||||||||||||| || |||||||| ||||| || |||
Sbjct 601 GATGCGTTGAAGGAGCTAGAGAACACAAAGGGACTGATTGAGGAGCTAAAACTCGAGTTG 660
Query 717 GAGAAAGCGGAAAAGGAAGAGCAACAAGCGAAACAGGATTCAGAGCTGGCGCAGATGCGT 776
|||||||| ||||||||||||||||| ||||||||||| || || || ||||||||||||
Sbjct 661 GAGAAAGCAGAAAAGGAAGAGCAACAGGCGAAACAGGACTCGGATCTTGCGCAGATGCGT 720
Query 777 GTTGAGGAGATGGAGAAAGGTGTAGCTAATGAGGCAAGTGTTGCTGTTAAAACACAGCTC 836
|| || ||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 GTGGAAGAGATGGCGAGAGGTGTAGCTAATGAGGCAAGTGTTGCTGTTAAAGCACAGCTC 780
Query 837 GAGGTAGCTAAAGCGAGGCAAGTCTCGGCTACTTCTGAGTTACGGTCTGTTAGAGAAGAG 896
|||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 781 GAGGTAGCGAAAGCGAGGCAAGTCTCGGCTACTTGTGAGCTACGGTCTGTGAGAGAAGAG 840
Query 897 ATTGAAATGGTTAGTAATGAATATAAAGATATGTTGAGGGAAAAAGAATTAGCTGCA-GA 955
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 841 ATTGAAATGGTTAGTAATGAATATGAAGATATGTTGAGGGAAAAAGAATTAGCT-AAGGA 899
Query 956 GAGAGCTGATATTGCTGTTTTGGAAGCTAAAGAGATTGAGAGAACGATGGATGGTTTGAG 1015
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 GAGAGCTGATATTGCTGTTATGGAAGCTAAAGAGATTGAGAGAACAATGGATGGTTTGAG 959
Query 1016 TATAGAGCTGATTGCCACCAAGGAGTTGTTGGAATCTGTGCACACGGCTCATCTCGAAGC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATAGAGCTGATTGCCACCAAGGAGTTGTTGGAATCTGTGCACACGGCTCATCTCGAAGC 1019
Query 1076 GGAAGAGAAGAGATTCAGTGTAGCAATGGCTAGGGACCAAGATGTTTATAATTGGGAAAA 1135
||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||
Sbjct 1020 GGAAGAGAAGAGATTCAGTGTGGCAATGGCTCGGGACCAAGATGTTTACAACTGGGAAAA 1079
Query 1136 GGAATTGAAGATGGTCGAAAATGATATTGAGAGGCTTAACCAAGAGGTTCGTGCGGCTGA 1195
||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1080 GGAATTGAAGATGGTGGAAAATGATATCGAGAGGCTTAACCAAGAAGTTCGTGCGGCTGG 1139
Query 1196 TGATGTGAAAGCTAAGCTAGAGACTGCTTCTGCTCTTCAGCATGATTTGAAGACCGAATT 1255
|||||||||| | |||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 1140 TGATGTGAAAACAAAGCTAGATACTGCTTCTGCTCTTCAGCATGATTTGAAGGCTGAATT 1199
Query 1256 AGCGGCTTTCACGGATATAT-CAAGCGGTAATCTGTTGTTGGAAAAGAA---T------G 1305
|||||||||||| || | || |||||||| |||||||| ||||||||| | |
Sbjct 1200 AGCGGCTTTCACAGAAA-ATGCAAGCGGTGATCTGTTGACGGAAAAGAAGAGTAATAATG 1258
Query 1306 ACATTCATGCTGCGGTTGAGTCTGCGAGGAGAGAACTCGAAGAAGTAAAAGCCAACATAG 1365
|||| ||||| || ||||| |||||||| ||||| || |||||||| ||||||||||| |
Sbjct 1259 ACATACATGCGGCTGTTGATTCTGCGAGAAGAGAGCTTGAAGAAGTCAAAGCCAACATTG 1318
Query 1366 AGAAAGCAGCTTCAGAGGTGAAAAAATTGAAGATAATAGCTGGTTCATTACAGTCTGAGC 1425
| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||
Sbjct 1319 AAAAAGCAGCTTCAGAGGTGAAAACATTGAAGATAATTGCTGGATCATTACAGTCCGAGC 1378
Query 1426 TTGGAAGAGAGAGACAGGATCTAGAAGAAACTAAGCAAAAAGAAAGTACGGGTTTGGCCC 1485
|||||||||||||||||||||||| |||||||||||| | || || | ||||| || |
Sbjct 1379 TTGGAAGAGAGAGACAGGATCTAGCAGAAACTAAGCAGAGAGGAACTGTGGGTTCGGTTC 1438
Query 1486 GGACAAACGATAAAGACGCAGGAGAGGAGTTGGTTGAAACAGCCAAGAAGTTGGAGCAGG 1545
|||||| | |||||| || |||||||||| | || ||||| ||||||||||||||||
Sbjct 1439 AGACAAAGGGTAAAGAATCAAGAGAGGAGTTAGAGGATACAGCAAAGAAGTTGGAGCAGG 1498
Query 1546 CGACGAAAGAGGCAGAGGATGCAAAGGCATTGGCTACAGCTTCTAGAGACGAGCTTAGAA 1605
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 1499 CGACGAAAGAGGCAGAGGATGCAAAGGCATTTGCTACAGCTGCTAGAGACGAGCTTCGAA 1558
Query 1606 TGGCGAAGGAATTGTCTGAGCAAGCGAAAAGAGGAATGTCTACGATAGAGAGTCGGTTAG 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1559 TGGCGAAGGAATTGTCTGAGCAAGCGAAAAGAGGAATGTCTACGATAGAGAGTAGGTTAA 1618
Query 1666 -TAGAGGCGAAAAAGGAAATGGAGGCTGCTCGGGCGTCAGAGAAGTTAGCCTTGGCTGCT 1724
| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1619 CT-GAGGCGAAAAAGGAAATGGAGGCTGCTAGGGCTTCAGAGAAGTTAGCCTTGGCTGCT 1677
Query 1725 ATAAAAGCTCTGCAAGAGACTGAATCTTCTCAGAGATTCGAGGAGATTAATAATTCACCA 1784
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATAAAAGCTTTACAAGAGACTGAATCTTCTCAGAGATTCGAGGAGATTAATAATTCACCA 1737
Query 1785 AGAAGCATTATAATCTCTGTAGAGGAATACTACGAGCTAAGCAAGCAGGCACTCGAGTCT 1844
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1738 AGAAGCATCATAATCTCTGTAGAGGAATACTACGAGCTAAGCAAGCAGGCACACGAGTCC 1797
Query 1845 GAGGAGGAGGCAAACACAAGACTATCAGAGATTGTCTCTCAAATAGAGGTGGCGAAAGAG 1904
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1798 GAGGAGGAGGCAAACACAAGACTATCAGAGATTGTCTCCCAAATAGAGGTGGCTAAAGAG 1857
Query 1905 GAAGAGTCAAGAATCTTGGAGAAACTAGAGGAAGTGAATAGAGAAATGAGTGTAAGAAAA 1964
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1858 GAAGAGTCAAGAATCTTGGAGAAACTAGAGGAAGTGAATAGGGAAATGAGCCTAAGAAAA 1917
Query 1965 GCAGAGCTTAAAGAGGCTAATGGAAAAGCCGAAAAGGCTAGAGATGGGAAGTTGGGAATG 2024
| |||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct 1918 GAAGAGCTTAAAGAGGCTAATGGAAAAGCCGAGAATGCTAGAGACGGGAAGTTGGGTATG 1977
Query 2025 GAGCAAGAGCTGAGAAAATGGAGGTCGGAAAATGGGAAGAGGAGAACAGACGAAGGCAGA 2084
||||||||| | ||||||||||| || ||||||||||| ||||||||||||||| ||||
Sbjct 1978 GAGCAAGAGTTAAGAAAATGGAGATCAGAAAATGGGAAAAGGAGAACAGACGAAAGCAGG 2037
Query 2085 GAGCCTGAGAAAAGTCCGACGAGGTCAAGCACCGAGGGGAGAAACAAGGAGAATGGA-TT 2143
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 2038 GAGCCTAAGAAAAGTCCGACGAGGTCAAGCACCGAGGGGAGAAATAAGGAGAACGGACTT 2097
Query 2144 CGGGCAGTCGAAATCGTTTGCATTTGGTGAACAAGGAAGCAGCAGCAACAACACTGGAGG 2203
|||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2098 -GGGCAGTCAAAATCGTTTGCATTTGGTGATCAAGGAAGCAGCAGCAACTACACTGGAGG 2156
Query 2204 AAGTACTACTACTAATA--A-TAATAATCTGACTCCTGAAACAaagaagaagaagaagaa 2260
| |||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 2157 AGGTACTACTACTACTACCAATAATAATCTGACTCCTGAAACAAAGAAGAAGAAGAAGAA 2216
Query 2261 gCTTTCTTTGTTTCCAAAAGTTTTCATGTTCTTGTCAAGAAAGAAGTCTCACAGTCACAA 2320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2217 GCTTTCTTTGTTTCCAAAAGTTTTCATGTTCTTGTCAAGAAAGAAGTCTCACAGTCGCAA 2276
Query 2321 GTGA 2324
||||
Sbjct 2277 GTGA 2280
> Ahg473856 jgi|Araly1|473856|fgenesh2_kg.1__3810__AT1G45545.1
Length=2220
Score = 750 bits (406), Expect = 0.0
Identities = 1295/1706 (76%), Gaps = 133/1706 (8%)
Strand=Plus/Plus
Query 413 TTTTGGTTC-TCCGAGATCTGTC-GAATCGCCTTGTTTCGGGT---CTCCGA-T--TGGT 464
|||| |||| ||||||||| || | ||| || ||||||||| || ||| | | ||
Sbjct 396 TTTT-GTTCATCCGAGATC-ATCTGCATCCCCACGTTTCGGGTCACCTACGAGTCCT-GT 452
Query 465 GTT-ATCGATACAGCTTCACC-TTTCGAATCGGT-TAGAGAAGCAGTTTCTAAGTTTGGT 521
|| |||||||| ||| |||| ||| |||||||| || ||||| ||||| |||||||||
Sbjct 453 CTTGATCGATACCGCTGCACCGTTT-GAATCGGTCAAG-GAAGCGGTTTCAAAGTTTGGT 510
Query 522 GGGATCACAGATTGGAAAGCTCATAAGATTCAGACTATAGAGAGACGGAAGATGGTAGAT 581
|||||||||||||||||||| ||||| || ||||| |||||||||||||||| ||| |||
Sbjct 511 GGGATCACAGATTGGAAAGCACATAAAATCCAGACAATAGAGAGACGGAAGACGGTGGAT 570
Query 582 GAAGAGCTTGAGAAGATACAAGAAGCA-ATGCCTGAGTACAAGAGAGAAGCTGA-GTTAG 639
|||||||||||||||||||||||| | ||||||||||| |||| | |||| | || ||
Sbjct 571 CAAGAGCTTGAGAAGATACAAGAAG-ATATGCCTGAGTATAAGAAACAAGCAGTTGT-AG 628
Query 640 CTGAAGAAGCGAA--ATACGATGCGTTGGA-GGAG-TTAGAGAACACAAAGGGAC-TCAT 694
| ||||| ||||| || | ||| | || | |||| || |||| |||| || | || |
Sbjct 629 CGGAAGAGGCGAAGCAT-C-ATGTGGTG-ATGGAGCTT-GAGAGGACAA-GGAATGTCGT 683
Query 695 CGAGGAGCTGAAACTAGAATTGGAGAAAGCGGAAAAGGAAGAGCAACAAGCGAAACAGGA 754
||| ||||| ||||| || | ||||| || ||||| |||||||||||||||||||| ||
Sbjct 684 CGAAGAGCTTAAACTGGAGCTAGAGAAGGCTGAAAAAGAAGAGCAACAAGCGAAACAAGA 743
Query 755 TTCAGAGCTGGCGCAGATGCGTGTTGAGGAGATGGAGAAAGGTG-TAGCTA-ATGAGGCA 812
||| || || ||| || |||| || ||||| |||||| |||| | |||| | |||| ||
Sbjct 744 TTCTGATCTCGCGAAGCTGCGAGTGGAGGAAATGGAGCAAGG-GATAGC-AGATGAAGCG 801
Query 813 AGTGTTGCTGTTAAAACACAGCTCGAGGTAGCTAAAGCGAGGCAAGTCTCGGCTACTTCT 872
||||| || | ||||||||||| |||||||||||||||||||| | || || ||||
Sbjct 802 AGTGTCGCAGCGAAAACACAGCTTGAGGTAGCTAAAGCGAGGCATTTGTCAGCGGTTTCT 861
Query 873 GAGTTACGGT-CTGTTAGAGAAGAGATTGAAATGGT-TAGTAATGAATATAAAGATATGT 930
||| || || | | ||||||||||| |||||||| | ||||| ||| | | | |||
Sbjct 862 GAGCTA-GGAACCATAAGAGAAGAGATAGAAATGGTGTCC-AATGAGTATGA-G-TCTGT 917
Query 931 T--GAGGGAAAAAGAATTAGCTGCAGAGAGA-GCTGAT-ATTGCTGTTTTGGAAGCTAAA 986
| |||||| ||||| || ||||| || | | || || ||| |||||||| ||||||||
Sbjct 918 TTTGAGGGAGAAAGATTTGGCTGC-GAAAAAAGCAGAGGATT-CTGTTTTGAAAGCTAAA 975
Query 987 GA-GATTGAGAGAACGA-TGGATGGTTTGA-GTATAGAGCTGATTGCCACCAAGGAGTTG 1043
|| | | |||| ||| | |||| ||||| | | |||||| | ||||| |||||| ||||
Sbjct 976 GATG-TAGAGA-AACAAATGGAGGGTTTAACG-ATAGAGGTCATTGCAACCAAGCAGTTA 1032
Query 1044 TTGGAATCTG-TGCACACGGCTCATCTCGAAGCGGAAGAGAAGAGA-TTCAGTGTAGCAA 1101
||||| || | | || || ||||||||||||| |||| |||| | || | || ||| |
Sbjct 1033 TTGGAGTCAGCT-CATGCGACTCATCTCGAAGCTCAAGAAAAGAAACTTGA-TGCAGCCA 1090
Query 1102 TGGCTAGGGACCAAGATGTTTATAATTGGGAAAAGGAA-TTGAAGATGGTCGAA-AATGA 1159
||||| | ||||| || |||||||| ||| |||||| || || ||||| ||| || ||
Sbjct 1091 TGGCTCGAGACCAGGACGTTTATAACCAGGAGAAGGAACTTAAA-ATGGTGGAAGAA-GA 1148
Query 1160 TATTGAGAGGCTTA-ACCAAGAGGTTCG-TGCGGCTGATGATGTGAAAGCTAAGCTAGAG 1217
||| ||||| ||| || |||| || | |||||| |||||||||||| | || ||| ||
Sbjct 1149 GATTAAGAGGTTTAGAC-AAGACATT-GATGCGGCAGATGATGTGAAAACCAAACTAAAG 1206
Query 1218 ACTGCTTCTGCTCTTCAGCATGATTTGAAGA-CCGAATTAGCGGCTTTCACGGA-T-ATA 1274
||||||||||| ||||| || ||||| ||| ||||| |||| |||| || || | | |
Sbjct 1207 ACTGCTTCTGCACTTCAACAAGATTT-AAGGGCCGAAATAGCCGCTTACAAAGACTCAAA 1265
Query 1275 TCAAGCGGTAATCTGTTGTTGGAAAAGAATGACATTCATGCTGCGGTTGAGTCTGCGAGG 1334
| | || || | | || || || ||| || || |||||||| || ||||||
Sbjct 1266 -CGTG-GGAAA---GA-GAAACAACAG--TGTCATACAAGCAGCGGTTGATTCCGCGAGG 1317
Query 1335 AGAGAA-CTCGAAGAAGTAAAAGCCAACATAGAGAAAGCAGCTTCAGAGGTGAAAAAATT 1393
| || | || |||||||| | | ||||||| ||||||||| ||| |||||||||| ||
Sbjct 1318 A-AGGAGCTTGAAGAAGTTATATCCAACATTGAGAAAGCAAATTCCGAGGTGAAAACTTT 1376
Query 1394 GAAGATAATAG-CTGGTTCATTACAGTCTGAGCTTG-GAAGAGAGA-GACAGGATCTAGA 1450
||||||||| | | || ||||| ||||| || |||| || |||||| | || ||| ||
Sbjct 1377 GAAGATAATTGTC-GGATCATTGCAGTCGGAACTTGCGA-GAGAGAAG-CAAGATTTATC 1433
Query 1451 AGAAACTAAGCAAAAAGAAAGTACGGGTTTGGCCCGGACAAACGATAAA-GACGCAGGAG 1509
||||| || || | |||| | | | | | | | |||||| | | ||| ||
Sbjct 1434 GGAAACCAAACAGA--GAAAC-A-GAGAA-GAAACA-AGAGTGGATAAATG-CACAG-AG 1485
Query 1510 AGGAGTTGGTTGAAACAGCCAAGAAGTTGGAGCAGGCGACGAAAGAGGCAGAGGATGCAA 1569
| || ||| || |||||| | |||||| || | | |||| || | |||
Sbjct 1486 AT-AGCCAA--GAAGTTGC-AAGAAGCT--AGCAGG-GAGGCA-GAGG-AG-G----CAA 1531
Query 1570 AGGCA-TTGGCTACAGCTTCTAGAGACGAGCTTAGAATGGCGAAGGAATTGTCTGA-GCA 1627
|| || ||| | | |||| | |||| ||||| |||| |||||||||| ||| || | |
Sbjct 1532 AGTCACTTGCC-ATAGCTGGTCGAGAGGAGCTGAGAAAGGCGAAGGAAGAGTCGGATG-A 1589
Query 1628 AGCGAAAAGAGGAATGTCTACGATAGAGAGTCGGTTAGTAGAGGCGAAAAAGGAAATGGA 1687
|||||||| |||| | ||| ||||||| || | |||| | ||||||||||||||||||||
Sbjct 1590 AGCGAAAACAGGACTCTCTGCGATAGAAAGACAGTTAATGGAGGCGAAAAAGGAAATGGA 1649
Query 1688 GGCTGCTCGGGCGTCAGAGAAGTTAGCCTTGGCTGCTATAAAAGC-TCTGCAAGAGACTG 1746
||| || | || || |||||||| ||||| ||||| |||||||| | |||||||||| |
Sbjct 1650 AGCTTCTAGAGCTTCTGAGAAGTTGGCCTTAGCTGCGATAAAAGCGT-TGCAAGAGACCG 1708
Query 1747 AATCTTCTCAGAGATTCGAGGAGATTAATAATTCACCAAGAAGCATTATAATCTCTGTAG 1806
||| | || | | | |||| || |||| || ||||||||||||||| ||||| || || |
Sbjct 1709 AATATGCTAACAAAATCGAAGACATTAGTAGTTCACCAAGAAGCATAATAATTTCAGTGG 1768
Query 1807 AGGAATACTACGAGCTAAGCAAGCAGGCAC-TCGAG-TCTGAGGAGG-AGGCAA-ACACA 1862
||||||| || |||||||||||||| |||| | ||| | || |||| || ||| | | |
Sbjct 1769 AGGAATATTATGAGCTAAGCAAGCAAGCACAT-GAGGTA-GAAGAGGCAGCCAATAGA-A 1825
Query 1863 AGACTATCAGAGATTGTCTCTCAAA-TAGAGGTGGCGAAAGAGGAAGAGTCAAGAATCTT 1921
| |||| | ||||| ||||| |||| | ||| |||| ||||| || || |||||||||||
Sbjct 1826 A-ACTAGCGGAGATCGTCTC-CAAAATCGAGATGGCTAAAGAAGAGGAATCAAGAATCTT 1883
Query 1922 GGAGAAA-CTAGAGGAAGTGAATAGAGAAATGAGTG-TAAGAAAAGCAGAGCTTAAAGAG 1979
||| ||| ||||||||||||| |||||||| || ||||||| | |||||| |||||
Sbjct 1884 GGA-AAATCTAGAGGAAGTGAGTAGAGAAAC-AGCAATAAGAAAGGTAGAGCTAAAAGAA 1941
Query 1980 GCTAATGG-AAAAGCCGA-AAAGGCTAGAGATGGGAAG-TTGGGAATGGAGCAAGAGCTG 2036
|| |||| ||||| || |||| |||||||||||||| |||| | |||| || ||| ||
Sbjct 1942 GC-AATGACAAAAGTTGAGAAAG-CTAGAGATGGGAAGGTTGGTA-TGGATCACGAGTTG 1998
Query 2037 AGAAAATGGAGGTCGGAAAATGGGAA 2062
|||||||||||||||| || |||||
Sbjct 1999 CGAAAATGGAGGTCGGATAACGGGAA 2024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5