BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G42890.1

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948939 jgi|Araly1|948939|scaffold_800826.1                        621    2e-177


> Ahg948939 jgi|Araly1|948939|scaffold_800826.1
Length=415

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 391/417 (94%), Gaps = 5/417 (1%)
 Strand=Plus/Plus

Query  98   TTTCACTACACTGCGCAATaaaaaaaTGGCGAATACCCAACTCAAATCCGATGCAATCAT  157
            |||||||||||||| | | ||||||||||| ||||||||||||||||| |||||||||||
Sbjct  1    TTTCACTACACTGCTC-A-AAAAAAATGGCAAATACCCAACTCAAATCTGATGCAATCAT  58

Query  158  GGACATGATGAAGGAACATCTTTCCACCGACGCCGGGAAAGAGGTCACAGAGAAGATCGG  217
            ||||||||||||||||||||| ||  ||||||| ||||||||  |||| |||||||||||
Sbjct  59   GGACATGATGAAGGAACATCTCTCTTCCGACGCTGGGAAAGATCTCACTGAGAAGATCGG  118

Query  218  TCTTGTTTATCAGATCAACATTGCTCCAAAGAAATTAGGGTTTGAAGAGGTTACTTACAT  277
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  119  TCTTGTTTATCAGATCAACATTGCTCCAAAGAAATTAGGGTTTGAAGAGGTTACTTTCAT  178

Query  278  CGTTGATCTGAAGAAAGGCGAAGTCACCAAAGGGAAATATGAAGGAGGGAAAGTGGATGC  337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CGTTGATCTGAAGAAAGGCGAAGTCACCAAAGGGAAATATGAAGGAGGGAAAGTGGATGC  238

Query  338  TACGTTCTCCTTCAAGGATGATGATTTTGTCAAAGTTGCCACTGGAAAGATGAATCCTCA  397
             ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  239  GACGTTTTCCTTCAAGGATGATGATTTTGTCAAAGTTGCTACTGGGAAGATGAATCCTCA  298

Query  398  GATGGCTTTCATTAGGGGTGCGATGAAGATCAAGGGTAGTCTCAGTGCTGCGCAGAAATT  457
            ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  299  GATTGCTTTCATCAGGGGTGCGATGAAGATCAAGGGTAGTCTCAGTGCGGCGCAGAAATT  358

Query  458  CACCCCTGACATCTTCCCTAAA-CCTTCAAAGTTGTGAACACCAAAAAGAGTGGTAT  513
            |||||| ||||||||||| ||| ||||||||||||||| ||| ||||||| ||||||
Sbjct  359  CACCCCGGACATCTTCCC-AAAGCCTTCAAAGTTGTGAGCAC-AAAAAGAATGGTAT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829729410


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5