BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42895.1
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906642 jgi|Araly1|906642|Al_scaffold_0003_3770 494 2e-139
Ahg481608 jgi|Araly1|481608|fgenesh2_kg.4__668__AT4G09545.1 486 4e-137
Ahg917846 jgi|Araly1|917846|Al_scaffold_0008_2597 449 5e-126
> Ahg906642 jgi|Araly1|906642|Al_scaffold_0003_3770
Length=369
Score = 494 bits (267), Expect = 2e-139
Identities = 339/373 (91%), Gaps = 8/373 (2%)
Strand=Plus/Plus
Query 1 ATGTCTATCAAAAATGTGCTTTCACTTC-TTGCGGTTTTATGCATCATTGTTTCTGTAAA 59
||||||||||||||||||||||||| || | || ||| |||||||||| |||||||||||
Sbjct 1 ATGTCTATCAAAAATGTGCTTTCAC-TCATAGCAGTTCTATGCATCATAGTTTCTGTAAA 59
Query 60 TGCTCAATTGCCACAGATTCCTGG-TCCGTTTCCTTTTCCATTTCCGTTCCAACCGATTC 118
|||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||
Sbjct 60 TGCTCAATTGCCACAGTTTCC-GGCTCCGTTTTCTTTTCCATTTCCGTTCCAACCGATTT 118
Query 119 CTGGTATGCCAGGATTACTTGACATAACAAAATGTTTGTCATCCGTGATGGATATTCCCA 178
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 119 CTGGTATGCCAGGATTACCTGATTTAACAAAATGTTTGTCATCCGTGATGGATATTCCTG 178
Query 179 GATGCATTACAGAAATTTCTCAATCTATTTTCATTGGAAAATTCGGTAATTTAGGTCCGG 238
|||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 179 GATGCATTGCAGAGATTTCTCAATCCATTTTCACTGGAAAATTCGGTAATTTAGGTCCGG 238
Query 239 CTTGTTGCAAAGCATTTTTGGATGCTGAAGCCAATTGTATGCCCAAAATTCCATTCATTC 298
|||||||||||||||||||||| || |||| |||||| || || ||||||| ||||||||
Sbjct 239 CTTGTTGCAAAGCATTTTTGGACGCCGAAGACAATTGCATACCGAAAATTCTATTCATTC 298
Query 299 CGCTTTTTCC-TCCAATGCTAAAGGAACAATGTTCAAGAATTG-CTGGTGCAACTCCTCC 356
| ||||||| ||| || ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 299 GG-TTTTTCCCTCCGATACTAAAGGAACAATGTTCAAGAATTGTC-GGTGCAACTCCTCC 356
Query 357 GACACCAAAATAG 369
|||||||||||||
Sbjct 357 GACACCAAAATAG 369
> Ahg481608 jgi|Araly1|481608|fgenesh2_kg.4__668__AT4G09545.1
Length=362
Score = 486 bits (263), Expect = 4e-137
Identities = 330/363 (91%), Gaps = 2/363 (1%)
Strand=Plus/Plus
Query 1 ATGTCTATCAAAAATGTGCTTTCACTTCTTGCGGTTTTATGCATCATTGTTTCTGTAAAT 60
|||||||||||||||||| ||||||| || |||| | |||||||||| |||||||| |||
Sbjct 1 ATGTCTATCAAAAATGTGATTTCACTCCTAGCGGCTCTATGCATCATAGTTTCTGTGAAT 60
Query 61 GCTCAATTGCCACAGATTCCTGGTCCGTTTCCTTTTCCATTTCCGTTCCAACCGATTCCT 120
||||| ||||||||| |||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 61 GCTCAGTTGCCACAGTTTCCAGCTCCGTTTCCTTTTCCATTTCCGTTCCATCCGATTCCA 120
Query 121 GGTATGCCAGGATTACTTGACATAACAAAATGTTTGTCATCCGTGATGGATATTCCCAGA 180
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 121 GGTATGCCAGGATTACCTGACATAACAAAATGTTGGTCATCCGTGATGGATATTCCTGGA 180
Query 181 TGCATTACAGAAATTTCTCAATCTATTTTCATTGGAAAATTCGGTAATTTAGGTCCGGCT 240
||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 181 TGCATCGCAGAGATTTCTCAATCCATTTTCACTGGAAAATTCGGTAATTTAGGTCCGGCT 240
Query 241 TGTTGCAAAGCATTTTTGGATGCTGAAGCCAATTGTATGCCCAAAATTCCATTCATTCCG 300
||||||||||||||||| || |||||||||||||| || || ||||||||||||||||||
Sbjct 241 TGTTGCAAAGCATTTTTAGACGCTGAAGCCAATTGCATACCGAAAATTCCATTCATTCCG 300
Query 301 CTTTTTCC-TCCAATGCTAAAGGAACAATGTTCAAGAATTGCTGGTGCAACTCCTCCGAC 359
||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 301 -TTTTTCCCTCCGATGCTAAAGGAACAATGTTCAAGAATTGCCGGTCCAACTCCTCCTAC 359
Query 360 ACC 362
|||
Sbjct 360 ACC 362
> Ahg917846 jgi|Araly1|917846|Al_scaffold_0008_2597
Length=369
Score = 449 bits (243), Expect = 5e-126
Identities = 332/374 (89%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 1 ATGTCTATCAAAAATGTGC-TTTCACTTC-TTGCGGTTTTATGCATCATTGTTTCTGTAA 58
|||||||| |||||||| | |||||| || | |||||| ||| |||||| ||||||| ||
Sbjct 1 ATGTCTATTAAAAATGT-CATTTCAC-TCATAGCGGTTCTATACATCATAGTTTCTGCAA 58
Query 59 ATGCTCAATTGCCACAGATTCCTGG-TCCGTTTCCTTTTCCATTTCCGTTCCAACCGATT 117
||||||| ||||||||| || |||| ||| ||||||||||||||||| ||||||||||||
Sbjct 59 ATGCTCAGTTGCCACAG-TTTCTGGCTCCATTTCCTTTTCCATTTCCATTCCAACCGATT 117
Query 118 CCTGGTATGCCAGGATTACTTGACATAACAAAATGTTTGTCATCCGTGATGGATATTCCC 177
||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 118 CCTGGGATGCCAGGATTACCTGACATAACAAAATGTTTGTCATCGGTGATGGATATT-CC 176
Query 178 A-GATGCATTACAGAAATTTCTCAATCTATTTTCATTGGAAAATTCGGTAATTTAGGTCC 236
| | |||||| |||| || |||||||| || |||| ||||||||| |||| || |||||
Sbjct 177 AGGGTGCATTGCAGAGATATCTCAATCCATATTCACCGGAAAATTCCGTAACTTGGGTCC 236
Query 237 GGCTTGTTGCAAAGCATTTTTGGATGCTGAAGCCAATTGTATGCCCAAAATTCCATTCAT 296
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||
Sbjct 237 GGCTTGTTGCAAAGCATTTTTGGACGCTGAAGCAAATTGTATGCCGAAAATTCTATTCAT 296
Query 297 TCCGCTTTTTCCTCCAATGCTAAAGGAACAATGTTCAAGAATTG-CTGGTGCAACTCCTC 355
|||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||
Sbjct 297 TCCGTTTTTTCCTCCGATGCTAAAGGAACAATGTTCAAGAATTGTC-GGTGCAACTCCTC 355
Query 356 CGACACCAAAATAG 369
| || |||||||||
Sbjct 356 CTACTCCAAAATAG 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13163678205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5