BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42900.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356828 jgi|Araly1|356828|fgenesh1_pg.C_scaffold_8000615 1016 0.0
> Ahg356828 jgi|Araly1|356828|fgenesh1_pg.C_scaffold_8000615
Length=762
Score = 1016 bits (550), Expect = 0.0
Identities = 704/771 (91%), Gaps = 39/771 (5%)
Strand=Plus/Plus
Query 82 ATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTTCT-C--CGA---TGAC--- 132
|||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1 ATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTGCTCCGACGACTCTGACGAT 60
Query 133 TC-T--GACGA---TTCTTCC-------GA-CGA-TGCTTCTTCCGTGGAGGGAGAGACC 177
|| | ||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 61 TCTTCCGACGATGCTTCTTCCGTGGAGGGAGAGACCGCTTCTTCCGTGGAGGGAGAGACC 120
Query 178 ACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAG 180
Query 238 CATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCGCTC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCTCTC 240
Query 298 GGAGCTCTCGGGAAGAACGAGAATGTATCCGAATCAACGAGGTTCGGTAGCGGTAGAAAA 357
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 GGAGCTCTGGGGAAGAACGAGAATGTATCGGAATCGACGAGGTTCGGTAGCGGTAGAAAA 300
Query 358 CCGTCTCAAGAACAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTGAAA 417
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CCGTCTCAAGAGCAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTTAAA 360
Query 418 CAACCTGAACATCGGATTAACGGAAGGCACGGTGGTAATTCTCATGAGTTTCTTAGGAGT 477
|||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||
Sbjct 361 CAACCTGAACATCGGATTAACGGAAGACACGGTAGT--T-CTCATGAGTTTCTTAGGAGT 417
Query 478 CCATGGATTAAGCATTATAAACCTTTAGTAAAGACACAAATCCCGGTAACGGATGAGCCC 537
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||
Sbjct 418 CCATGGATTAAGCATTATAAACCTTTAGTAAAGACGCAAATTTCGGTAATGGATGCGCCC 477
Query 538 GAAAATCAAGTTGTTAGCAGCTCTAATGGGAAGAAGGGAATA-T-----GCAGCTCTGGC 591
||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||
Sbjct 478 GAAAATCAAGTTGTTAGCAGCTCAAATGGGAAGAAGGTAATAGTTATATGCAGCTCTGGT 537
Query 592 TCAGCCTCTAGTCTCAAGCAGCTAAGCTCTCATTCGCGTGACCACGACCAAATCAGCGTT 651
|||||||| | |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 538 TCAGCCTCGAATCTCAAGCAGATATGCTCTCATTCGCGTGACCACGACCAAATCAGCGTT 597
Query 652 GGAGAAGCAGAGGTATCGGATCAGAACTTTGTTAACGAAGGAATAAAAGGCGAAAACGGA 711
||||||| || | |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 598 GGAGAAG-AG-G-TATCGGATCAGAACTTTGTTAACGAAGGAACAAAAGGCGAAAATGGA 654
Query 712 AGCTCGAAGAAGATGAAGACGGTGATGATGAGTGAATCGTCGAGTACCGATCAGGTTGTT 771
|||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 655 AGCTCGAAGAAGATGAAGACAGTGATGA-G--TGAATCGTCTAGTACCGATCAGGTTGTT 711
Query 772 CCACTCAATAAACTCTTGCAACATGACGTAAATTTGAAGTCTGTTTCTTGA 822
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 CCACTCAATAAACTCTTGCAACATGACATAAATTTGAAGTCTGTTTCTTGA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5