BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42910.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg915998 jgi|Araly1|915998|Al_scaffold_0008_749 1502 0.0
> Ahg915998 jgi|Araly1|915998|Al_scaffold_0008_749
Length=1107
Score = 1502 bits (813), Expect = 0.0
Identities = 1022/1121 (91%), Gaps = 22/1121 (2%)
Strand=Plus/Plus
Query 167 ATGGATAGTTACTGGAGACTTAAAAACTTGGTGAATGATTTGCCAGTTAGTACTTCTTTA 226
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAGTTACTTGAGACTGAAAAACTTGGTGAATGATTTGCCAGTTAGTACTTCTTTA 60
Query 227 AGCCGACAAGGATCAATATACTCATGGACAGTAGATCAGTTTCAGACCAGCTTAGGGTTA 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AGCCGACAAGGATCAATATACTCATGGACAGTAGATCAGTTTCAGACCAGCTTAGGGAAA 120
Query 287 GATTGTGGATCAATGAACATGGATGAGTTGGTTAAGCAT-ATATCAAGTGCTGAAGAAAC 345
||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 121 GATTGTGGATCAATGAACATGGATGAGCTGGTTAAG-ATGATATCTAGTGCTGAAGAAAC 179
Query 346 ACAAGAGGGGTCGCAGAGGCAAGGCTCAACTACTCTGCCTCCAACACTTAGCAAACAAAA 405
||||||||| ||||||||||||| |||||| |||||||||| |||||||||| || ||||
Sbjct 180 ACAAGAGGGATCGCAGAGGCAAGTCTCAACAACTCTGCCTCGAACACTTAGCCAA-AAAA 238
Query 406 -TGTTGGTGAAGTTTGGAAATCTATCACAGAGGAAAAACACACCAATAACAATGGAGGAG 464
|||| |||||||||||||| |||| ||||||| |||||||||| |||||||||||||
Sbjct 239 CTGTTAATGAAGTTTGGAAATATATCTTAGAGGAAGAACACACCAAAAACAATGGAGGAG 298
Query 465 TAACAAACATTAC-TCATCTTCAG-GGACAACAAACCTTAGGGGAAATCACTCTTGAAGA 522
|||||||||| || | |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 299 TAACAAACAT-ACCTAATCTTCAGAGG-CAACAAACCTTAGGGGAAATCACTCTTGAAGA 356
Query 523 GTTTTTCATCCGTGCTGGAGCAAGAGGAGGTAATACCAATGGTGGCTCCATTCATGACTC 582
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GTTTTTCATCCGTGCTGGAGAAAGAGGAAATAATACCAATGGTGGCTCCATTCATGACTC 416
Query 583 ATCGTCATCGATTTCCGGTAATCCACACACTAGTTTGGGTGTTCAGATTCAGCCAAAAGC 642
||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||
Sbjct 417 ATCGTCATCGATTTCCGGTAATCCAAACACAAGTTTGGGTGTTCATATTCAGCCGAAAGC 476
Query 643 CATGGTTTCTGATTTTATGAACAATATGGTTCCAAGGAGTCATGATTCTTATTTGCATCA 702
||||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 477 CATGGTTACTGATATTATGAACAATATGGTTCCAAGGAGTCTTGAGTCTAATTTGCATCA 536
Query 703 AAATGTGAATGGATCT-ATGTCAACATATCAACCACAACAATCTATCATGTCTATGCCAA 761
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 AAATGTGAATGGA-CTTATGTCAACATATCAACCACAACAATCTATCATGTCTATGCCTA 595
Query 762 ATGGTTATTCTTATGGAAAACAAATCCGATTCTCAAATGGTTCCTTGGG-ATCTGGTAAC 820
||||||||||||| |||||||||||||||||| | ||||||| | |||| || || | |
Sbjct 596 ATGGTTATTCTTACGGAAAACAAATCCGATTCACGAATGGTTTCATGGGTAT-TG--A-C 651
Query 821 CAAAGTCTCCAAGATACGAAGAGAAGCTTGGTCCCAAGTGTTGCGACAATTCCAAGTGAA 880
||||| |||||||| | ||||||||||||||||| |||||| |||||||||| | ||
Sbjct 652 CAAAGACTCCAAGAAAAAAAGAGAAGCTTGGTCCCCAGTGTTACGACAATTCCT-G-GA- 708
Query 881 GCCATAACATGTTCACCGGTTACCCCATTTCCAACATTAAATGGGAAACAAAAGATTAAC 940
|| |||||||||||||||||||| |||||||||||||||||||||| |||||| || |
Sbjct 709 GCTATAACATGTTCACCGGTTACTCCATTTCCAACATTAAATGGGATACAAAAAATCGAT 768
Query 941 GGTGAGTCTTCATTACTCTCACCATCTCCATACATTAGTAATGGTAGTACTAGTACAAGA 1000
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 769 GGTGAGTCTTCATTACTGTCACGATCTCCATACATTAGTAATGGTAGTACTAGTACAAG- 827
Query 1001 G-GTGGGAAGATTAATAGTGAAATTACCGCGGAAAAACAATTCGTTGACAAAAAGCTTAG 1059
| ||||||||||| ||| ||| || |||||||| |||||||||||||||||||||| ||
Sbjct 828 GTGTGGGAAGATTCATAATGACATCACCGCGGAGAAACAATTCGTTGACAAAAAGCAAAG 887
Query 1060 GAGAAAGATTAAGAACCGAGAATCCGCAGCGAGATCACGGGCTCGAAAGCAAGCTCAAAC 1119
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 888 GAGAAAGATAAAGAACCGAGAATCCGCAGCAAGATCACGGGCTCGGAAGCAAGCTCAAAC 947
Query 1120 TATGGAGGTTGAAGTTGAACTTGAAAACTTAAAGAAAG-ATTATGAAGAGCTACTAAAAC 1178
||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 948 TATGGAGCTTGAAGTTGAACATGAAAACTTAAAGAAAGCAT-ATGAAGAGCTACTAAAAC 1006
Query 1179 AACATGTAGAGTTGCGGAAAAGACAAATGGAACCAGGAATGATTAGCCTTCATGAACGAC 1238
||||||||||| |||||||||| ||||| ||||| || ||| ||| |||||| | | |||
Sbjct 1007 AACATGTAGAGATGCGGAAAAGGCAAATCGAACCGGGGATGCTTAACCTTCAAGGAGGAC 1066
Query 1239 CGGAGAGAAAGCTGAGGAGAACGAAATCGGACATCAAGTGA 1279
| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1067 CAGAGCGAAAGCTGAGGAGAACGAAATCGGACATCAAGTGA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5