BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42930.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494726 jgi|Araly1|494726|fgenesh2_kg.8__542__AT5G42930.1 1430 0.0
Ahg474822 jgi|Araly1|474822|fgenesh2_kg.1__4776__AT1G56630.1 398 9e-110
> Ahg494726 jgi|Araly1|494726|fgenesh2_kg.8__542__AT5G42930.1
Length=931
Score = 1430 bits (774), Expect = 0.0
Identities = 876/926 (95%), Gaps = 4/926 (0%)
Strand=Plus/Plus
Query 565 AGATGGACTTATTAGGTTTCTACAGCTGTTGGAATGGTTACCAGAAACAAAGATCAACGG 624
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 8 AGATGGACTTATTAGGTTTCTACAGCTGTTGGAATGGTTACCAGAAACAAAGGTCAACAG 67
Query 625 AGGTGATTGTTATAAAGGACACAAGTACAGATCCAAACCTCATCATCGTTAGTTTCAGAG 684
| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 68 AAGTGATTGTTATAAAAGACACAAGCACAGATCCAAACCTTATCATTGTTAGTTTCAGAG 127
Query 685 GCACTGATCCTTTCGATGCCGATGATTGGTGTACAGACCTGGATCTCTCTTGGTACGAGG 744
||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 128 GCACTGATCCTTTTGATGCCGATGATTGGTGTACAGACTTGGATCTCTCCTGGTACGAGG 187
Query 745 TTAAGAATGTGGGAAAGATTCATGGCGGGTTCATGAAAGCTTT-GGGCCTTCAAAAAGAA 803
||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||
Sbjct 188 TTAAGAATGTGGGAAAGATCCATGGCGGATTCATGAAAGCTTTAGGG-CTTCAAAAAGAA 246
Query 804 GGATGGCCTAAAGAAGTAAACCTTGACGAAACCCAAAACGCAACAACTCTATATGCATAC 863
||||||||||| ||||||||| ||||| |||||||||| | |||||||||||||||||||
Sbjct 247 GGATGGCCTAAGGAAGTAAACTTTGACCAAACCCAAAAAGAAACAACTCTATATGCATAC 306
Query 864 TACACTGTTAGGCGTCACTTAAAAGAAATCCTCGACCAAAACCCGACATCTAAATTTATA 923
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 307 TACACTGTTAGGCGTAACTTAAAAGAAATTCTCGACCAAAACCCGACATCTAAATTTATA 366
Query 924 TTGACCGGACATAGCCTAGGTGGGGCTTTAGCGATCCTATTCACGGCTGTTTTGGTGATG 983
|||||||||||||||||||||||||||||||| || |||||||||||||| || || |||
Sbjct 367 TTGACCGGACATAGCCTAGGTGGGGCTTTAGCTATTCTATTCACGGCTGTGTTAGTCATG 426
Query 984 CATGATGAGGAGCAAATGCTAGAGAGACTAGAAGGAGTTTACACATTTGGACAGCCACGC 1043
||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 427 CATGAAGAGGAGCAAATGCTAGAGAGGCTAGAAGGAGTTAACACATTTGGACAGCCACGC 486
Query 1044 GTAGGCGACGAGGAGTTTGGAAATTTCATGAAAGATTCACT-AAAGAAGTTTGACGTGAA 1102
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 487 GTAGGCGACGAGGAGTTTGGAAATTTCATGAAAGATTCGTTGAAA-AAGTTTGACGTGAA 545
Query 1103 GTATGAAAGATATGTTTATTGCAACGACATGGTTCCTAGGTTGCCTTTCGACGACAAAAC 1162
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 GTACGAAAGATATGTTTATTGCAACGACATGGTTCCTAGGTTGCCTTTCGACGACAAGAC 605
Query 1163 ACTCATGTTTAAACACTTTGGGGCATGCCTTTACTATGACAGTTTCTATAAAGGAAAGGT 1222
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 ACTCATGTTCAAACACTTTGGGGCGTGCCTTTACTATGACAGTTTCTATAAAGGAAAGGT 665
Query 1223 AGAGGAAGAGGAACCAAACAAAAACTACTTTAATCTCGTATGGGTTTTACCAAAGATAAT 1282
||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 666 AGAGGAAGAAGAGCCAAACAAAAACTACTTTAATCTCTTATGGGTCACACCAAAGATAAT 725
Query 1283 GAATGCACTGTGGGAGTTGATACGTAGTTTCGTCATGCCTTATTGGAAAGGTGGAGAGTT 1342
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 726 GAATGCAATGTGGGAGTTGATACGTAGTTTCGTCATACCTTATTGGAAAGGTGGAGAGTT 785
Query 1343 CAGAGAAGGATGGTTCTTAAGGTGTTTTAGGGTTGTTGCATTGTTGATTCCTGGATTACC 1402
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 786 CAGAGAAGGATGGTTCTTGAGGTGTTTTAGGGTTGTTGCATTGTTGATTCCGGGATTACC 845
Query 1403 TGCTCACTTCCCTAATGAGTACATCAATGTTACTCTTTTAGGTGACTTACCTGACTCGCA 1462
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 846 TGCTCACTTTCCTAATGAGTACATCAATGTTACTCTTTTGGGTGATTTACCTGACTCGCA 905
Query 1463 TCTTGATTAAATTTTGACGAAGTCAT 1488
||||||||||||||||||||||||||
Sbjct 906 TCTTGATTAAATTTTGACGAAGTCAT 931
> Ahg474822 jgi|Araly1|474822|fgenesh2_kg.1__4776__AT1G56630.1
Length=1056
Score = 398 bits (215), Expect = 9e-110
Identities = 322/374 (86%), Gaps = 6/374 (2%)
Strand=Plus/Plus
Query 1084 TAAA-GAAGTTTGACGTGAAGTATGAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 1142
|||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 620 TAAAGGAA-TTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 678
Query 1143 TTGCCTTTCGACGACAAAACACTCATGTTTAAACACTTTGGGG-CATGCCTTTACTATGA 1201
||||||||||||||||| ||||||||||| ||||| ||||||| | |||||||||| | |
Sbjct 679 TTGCCTTTCGACGACAAGACACTCATGTTCAAACATTTTGGGGAC-TGCCTTTACTGTAA 737
Query 1202 CAGTTTCTATAAAGGAAAGGTAGAGGAAGAGGAACCAAACAAAAACTACTTTAATCTCGT 1261
||||||||| ||||||||||| || |||||||| ||||||||||||||||| ||| | |
Sbjct 738 CAGTTTCTACAAAGGAAAGGTGGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATATT 797
Query 1262 ATGGGTTTTACCAAAGATAATGAATGCACTGTGGGAGTTGATACGTAGTTTCGTCATGCC 1321
|||||| |||| |||||| | || ||| |||||||||||||| | |||||| |||| |
Sbjct 798 TTGGGTTATACCGAAGATATTAAACGCAGTGTGGGAGTTGATAAGGAGTTTCATCATATC 857
Query 1322 TTATTGGAAAGGTGGAGAGTTCAGAGAAGGATGGTTCTTAAGGTGTTTTAGGGTTGTTGC 1381
|| |||| ||||| ||| | ||||||||||||||| || | |||||||||| |||||||
Sbjct 858 TTGTTGGCAAGGTAAAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGGCTTGTTGC 917
Query 1382 ATTGTTGATTCCTGGA-TTACCTGCTCACTTCCCTAATGAGTACATCAATGTTACTCTTT 1440
|||||||||||| ||| || |||||||| || |||||||||||| |||||||| ||||||
Sbjct 918 ATTGTTGATTCCGGGACTT-CCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTT 976
Query 1441 TAGGTGACTTACCT 1454
| || |||| |||
Sbjct 977 TGGGAAACTTTCCT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5