BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42940.1
Length=2611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331106 jgi|Araly1|331106|fgenesh1_pm.C_scaffold_8000449 3221 0.0
Ahg473842 jgi|Araly1|473842|fgenesh2_kg.1__3796__AT1G45180.1 407 2e-112
> Ahg331106 jgi|Araly1|331106|fgenesh1_pm.C_scaffold_8000449
Length=2049
Score = 3221 bits (1744), Expect = 0.0
Identities = 1976/2082 (95%), Gaps = 39/2082 (2%)
Strand=Plus/Plus
Query 217 ATGCAGGGGGAGAGGGCCAGTCTTGGCTATTTATCAGAGGCCTTGAACTTTGAGCATGGT 276
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGGGGGAGAGGGCCAGTCTTGGTTATTTATCAGAGGCCTTGAACTTTGAGCATGGT 60
Query 277 TCTTCTTCAAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAAT 336
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTTCGAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAAT 120
Query 337 GACTTGCAGGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTT 396
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTTGCAAGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTT 180
Query 397 TATCACGAGCAACAGGGTTTACGCAGATTTAGCCTTGGTGAGGCTAGCTCTAGTGGCACG 456
||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 181 TATTGCGAGCAACAGGGTTTACACAGATTTAGCCTCGGTGAGGCTAGCTCTAGTGGCACG 240
Query 457 AAGGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACAAGATGCTTTGACGGACGA 516
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AAAGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACTAGATGCTTTGACGGACGA 300
Query 517 GGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCT 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCT 360
Query 577 GTTCAGAATGTCAATCTGAATGCAGAGTATATAGAAATTCACGAGGATATTAATCCATAT 636
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GTTCAGAGTGTCAATCTGAATGCAGAATATATAGAAATTCACGAGGATATTAATCCATAT 420
Query 637 AGAGGTCGGTCTGGCTTCATAGAAGCTAATGGACCAGGGACCAGGGTCTCACAACCTGGC 696
|| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 AGGGGTCGGTCTGGCTTCTTAGAAGCTAATGGACCAGGGACCAGGGTTTCACAACCTGGC 480
Query 697 AGATCTTTTGAAGAGAACGGTGTTGGAACAGGTTCTTCTGTAGAGGGACGTCGTGCATCC 756
||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CGATCTTTTGAAGAGACCAGTGTTGGAACAGGTTCTTCTGTAGAGGGACGACGTGCATCC 540
Query 757 TGCAAAAGAAAAGCTCTTGAAGGCAGTATTAGTCAATCTTCTTCAGGAGGTTATCATGAT 816
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 541 TGCAAGAGAAAAGCTCTTGAAGGCAGTATTGGTCAATCTTCTTCAGGAGGTTATCGTGAT 600
Query 817 TTCCAGCGTGGAGAAAGCAGTTCGTGGACCCCAGGTTCTACGGTTTTTAGGCCAGGAAAT 876
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 601 TTCCAGCGTGGAGAAAGCAGTTCATGGACCCCAGGTTCTACGGTTTATAGGCCAGGAAAT 660
Query 877 GGTTTAAACATATCTGGCTCCCTTGACAATGGACCAAGAGGAATGGTCTCCGGTACTGTA 936
||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||
Sbjct 661 GGTTTAAACATATCTAGCTCCCTTGACAATGGACCAAGAGGACTGGTCTCC-G----GT- 714
Query 937 CCAAATTTTCCTGTTTCTGCACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGT 996
| || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ----A----CC-G----T--ACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGT 759
Query 997 AGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCATCTACC 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 760 AGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCAGCTACC 819
Query 1057 TTTGCTGCGGGAACTGTTGTCAGGCGGCCTGTCCCTCCATCCCAGTTGAACTTGTCAAGA 1116
||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 820 TTTTCCGCGGGAACTGTTGTCAGGCGACCTGTCCCTCCATCCCAGTTGAACTTATCAAGA 879
Query 1117 CACTTACCAGCAGATCAGCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCGTTTCT 1176
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 880 GTCTTACCAGCAGATCATCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCTTTTCT 939
Query 1177 CGTAACCCAAATTCTACTCCTGTGAGCATACCACCTGGTTCAAGGACTATGCTACCACCA 1236
|||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 940 CGTACCCCAAATGCTACTGCTGTGAGCATACCACCTGTTTCAAGGACTATGCTACCACCA 999
Query 1237 TTTCGGTGGACTG-GGAGCTCACTAGTGGGTGGAACATCGAACTCTACTGCGCCCGTTGA 1295
||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1000 TTTCGGTGGACTGAGG-GATCACTAGCGGGTGGAACATCGAACTCTACTGCGCCCGTTGA 1058
Query 1296 GAGAAATCTTCATCTAGATGAAACCAGGTCAAGAAGCATACCCGGGAATACTCTTGAGAT 1355
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1059 GAGAAATCTTCATCTAGATGAAACCAGATCAAGAAGCATACCCGGGAATACTCTAGAGAT 1118
Query 1356 TCCCATGTTTGCAGCTCCTGAGGTAGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGT 1415
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1119 TCCCATGTTTGCAGCTCCTGAACTCGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGT 1178
Query 1416 AACAAATGGAAACCTGAATAGTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGT 1475
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AACAAATGGAAACCTGAATATTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGT 1238
Query 1476 TccaccaccaccaccaccaTCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACA 1535
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 T------CCACCACCACCATCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACA 1292
Query 1536 TTATCAAAGAAGAAGGACTGAAAGGTCTGAACTTG-CACGTAGGTCCTTGCTTTCTTCCC 1594
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1293 TTATCAAAGAAGAAGGACTGAGAGGTCTGAACTTGTC-CGTAGGTCCTTGCTTTCTTCCC 1351
Query 1595 TTGCAGCAGATGCTACAAACCAGAGATCTGGTGATCATCCAACACTTCGTTCGTTGGCCC 1654
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1352 TTGCAGGAGATGCTACAAACCAGAGATCAGGTGATCATCCAACACTTCGTTCGGTGGCCC 1411
Query 1655 CTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATA 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 CTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATA 1471
Query 1715 ATCGGGCTTACTCGAGAGCAGGTCCGTT-GTTTGATAGGCAAGGGGATAGTGTGGTTGGT 1773
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1472 ATCGGGCTTACTCGAGAGCAGGTCC-TTGGTTTGATAGGCAAGGGGATACTGTGGTTGGT 1530
Query 1774 ATTCCTCATCCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTG 1833
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 ATTCCTCATTCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTG 1590
Query 1834 TCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGATGCTAATAATAACAACTTGCGG 1893
|||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct 1591 TCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGAGGGTAATAATAAC---TTGCGG 1647
Query 1894 CTTGAGGACGTTATGCTTCTAAATCACTCAGTACTATTTGATGGGGCTACTGGT---CAT 1950
|||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||
Sbjct 1648 CTTGAGGACGTTATGCTTCTAAATCAGTCAGTACTGTTTGATGGGGCTGCTGGTATTCAT 1707
Query 1951 GACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCA 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 GACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCA 1767
Query 2011 CTAGAAGAGCGGATTGGAGATGTTTGTACCGGTGTAAACGAGGAAACCATATCAAACCGG 2070
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1768 CTAGAAGAGCGGATTGGAGATGTATGTACCGGTGTAAACGAGGAAACCATATCAAACCGG 1827
Query 2071 TTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATGCAGAGCCATGCTGT 2130
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1828 TTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATACAGAGCCATGCTGT 1887
Query 2131 GTTTGTCAGGAGGAATACACCGAAGGAGAAGACATGGGGACACTAGAATGTGGGCATGAA 2190
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1888 ATTTGTCAGGAGGAATACACTGAAGGAGAAGACATGGGGACACTAGAATGTGGGCACGAA 1947
Query 2191 TTCCATAGCCAATGCATTAAAGAATGGCTGAAACAGAAGAATCTTTGCCCAATCTGCAAG 2250
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1948 TTCCATAGCCAATGCATAAAAGAATGGCTGAAACAGAAGAATCTGTGCCCAATCTGCAAG 2007
Query 2251 ACTACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGCATGA 2292
|| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2008 ACAACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGGATGA 2049
> Ahg473842 jgi|Araly1|473842|fgenesh2_kg.1__3796__AT1G45180.1
Length=2411
Score = 407 bits (220), Expect = 2e-112
Identities = 505/637 (79%), Gaps = 41/637 (6%)
Strand=Plus/Plus
Query 1644 TTCGTTGGCCCCTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATA- 1702
||| |||| ||||||| ||||| |||||| || ||||||||| ||||||||| ||| |
Sbjct 1569 TTCCTTGGTCCCTCCTTCCTCTCCGGATGAGCATGTGCTTCAATCTGGTGGTGTTAACAC 1628
Query 1703 --GTCAGATGCATAATCGGGCTTACTCGAGAGCAGGTCCGTTGTTTGATAGGCAAGGGGA 1760
|||| ||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct 1629 CTCTCAGGTGCATAATCGGGCTTCCTCGAGAGCAGGTCC--------A-AGGCAAGGGCA 1679
Query 1761 TAGTGTGGTTGGTATTCCTCATCCTTTGCG-GGCCTTGGCAGCTGCAAG-CAGAGGAAGA 1818
| || ||| ||||||||| ||||||| || ||||||| | |||| | ||||||||
Sbjct 1680 AAATGCAACTGGCATTCCTCATTCTTTGCGAGG-CTTGGCATCCACAAGTC-GAGGAAGA 1737
Query 1819 AGCAGACTTATGGTGTC--CC-AGATGCAG-AATGTCTTGGATG-TCATGCGTAGGGATG 1873
|||||| |||| | | || |||| | | ||||||||||| | |||||||| || |
Sbjct 1738 AGCAGA---ATGGGGGCAGCCGAGAT-CCGTAATGTCTTGGA-GCACATGCGTA--GA-G 1789
Query 1874 CTAATAATAACAACTTGCGGCTTGAGGACGTTATGCTTCTAAATCACTCAGT-ACTATTT 1932
| | |||||||| ||||||| ||||||||||| ||||| ||| | | |
Sbjct 1790 C-----A-GGGAACTTGCGTTTTGAGGATGTTATGCTTCTCAATCAGTCAATGGC-GCTA 1842
Query 1933 GATGGGGCT-ACTGGTCATGACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTC 1991
| || |||| | | ||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 1843 GGTGTGGCTGA-TATTCATGACCGATATAGAGACATGCGACTTGATGTTGACAACATGAC 1901
Query 1992 ATATGAGGAATTGTTGGCACTAGAAGAGCGGATTGGAGATGTTTGTACCGGTGTAAACGA 2051
||||||||| |||||| | ||||||||||||||||||||||||||||||||| | || ||
Sbjct 1902 ATATGAGGAGTTGTTGTCTCTAGAAGAGCGGATTGGAGATGTTTGTACCGGTTTGAATGA 1961
Query 2052 GGAAACCATATCAAACCGGTTAAAGCAAC-GAAAATACAAAAGCAACACAAAATCTCCAC 2110
|||||||||||||||||| || ||||||| ||| |||||||| | || | ||||| |
Sbjct 1962 GGAAACCATATCAAACCGATTGAAGCAACAGAAG-TACAAAAGTAGTACCAGTTCTCCTC 2020
Query 2111 AAGATGCAGAGCCATGCTGTGTTTGTCAGGAGGAATACACCGAAGGAGAAGACATGGGGA 2170
|||| | ||| ||||||||| |||||||||||||||||| ||||||||||| | || |
Sbjct 2021 AAGAAGTAGAACCATGCTGTATTTGTCAGGAGGAATACAAGGAAGGAGAAGATAAAGGAA 2080
Query 2171 CACTAGAATGTGGGCATGAATTCCATAGCCAATGCATTAAAGAATGGCTGAAACAGAAGA 2230
| || || ||||| || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 2081 TGTTGGAGTGCGGGCACGACTTCCATAGCCAATGCATCAAAGAATGGCTGAAGCAGAAGA 2140
Query 2231 ATCTTTGCCCAATCTGCAAGACTACAGGCTTGAACAC 2267
|||||||||| || ||||| || ||||| || |||||
Sbjct 2141 ATCTTTGCCCCATTTGCAAAACCACAGGATTAAACAC 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98463283325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5