BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42955.1
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494722 jgi|Araly1|494722|fgenesh2_kg.8__538__AT5G42955.1 582 6e-166
Ahg952316 jgi|Araly1|952316|scaffold_58500002.1 545 8e-155
Ahg948923 jgi|Araly1|948923|scaffold_800810.1 545 8e-155
Ahg948921 jgi|Araly1|948921|scaffold_800808.1 545 8e-155
Ahg949066 jgi|Araly1|949066|scaffold_800953.1 544 3e-154
Ahg948919 jgi|Araly1|948919|scaffold_800806.1 538 1e-152
Ahg948916 jgi|Araly1|948916|scaffold_800803.1 538 1e-152
Ahg948918 jgi|Araly1|948918|scaffold_800805.1 532 6e-151
Ahg952224 jgi|Araly1|952224|scaffold_47400001.1 531 2e-150
Ahg948917 jgi|Araly1|948917|scaffold_800804.1 527 3e-149
Ahg497471 jgi|Araly1|497471|fgenesh2_kg.585__1__AT5G42955.1 501 2e-141
Ahg494746 jgi|Araly1|494746|fgenesh2_kg.8__562__AT5G42955.1 496 8e-140
Ahg333428 jgi|Araly1|333428|fgenesh1_pm.C_scaffold_1006000001 466 7e-131
Ahg497449 jgi|Araly1|497449|fgenesh2_kg.474__9__AT5G42955.1 220 6e-57
Ahg497454 jgi|Araly1|497454|fgenesh2_kg.474__14__AT5G42957.1 207 4e-53
> Ahg494722 jgi|Araly1|494722|fgenesh2_kg.8__538__AT5G42955.1
Length=414
Score = 582 bits (315), Expect = 6e-166
Identities = 382/415 (92%), Gaps = 2/415 (0%)
Strand=Plus/Plus
Query 38 TAAAATAAGAATATTTCTTGTATATTTCAACCATAAGTAGATATGTCTAAATTTAACACT 97
||||||||||||| |||||||| ||||||| | |||||||||||||||||||||| | ||
Sbjct 1 TAAAATAAGAATAATTCTTGTACATTTCAAGCGTAAGTAGATATGTCTAAATTTAGCTCT 60
Query 98 CAGATTACTACATTGTTCATTGTTTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCA 157
|| |||||||| | ||||| ||| ||||||||||||||| ||||||||||| |||||||
Sbjct 61 CATATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGTGTTTGTTCCGGTTTTCTCA 120
Query 158 GTCGAAGAAGCTGAAGCAACATTATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAG 217
||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 121 GTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTTGTAAAAATCACTCCTAAG 180
Query 218 TGTGCTTTGGATATAATCGCTGCTGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTG 276
||||| ||||||||||||| || ||||||||||||||||||||| | |||||||||||||
Sbjct 181 TGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTG 239
Query 277 CAAGGATCTCGTCAAAGAAGGAAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGA 336
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGA 299
Query 337 TAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAA 396
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 TAAACCCATGTTACTTGCCCACGAAACAGAATACTTGAAGAAGAGTGCTGACTTGTGGAA 359
Query 397 ACATTGTGTCTCAATTTCCAAAAGTGCTTCAAATATGGAATGCTTTTACTATTTT 451
|||||||||||||| || |||||||||| ||||||| | ||||| |||||||||
Sbjct 360 TCATTGTGTCTCAATCTCGAAAAGTGCTTGAAATATGTATTGCTTGTACTATTTT 414
> Ahg952316 jgi|Araly1|952316|scaffold_58500002.1
Length=389
Score = 545 bits (295), Expect = 8e-155
Identities = 358/389 (92%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 61 ATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTGT 120
||||||| | |||||||||||||||||||||| | |||| |||||||| | ||||| ||
Sbjct 2 ATTTCAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGT 61
Query 121 TTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATT 180
| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 62 TGTAGCTTTGGTGTGTGTGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTAAAGCAAAATC 121
Query 181 ATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGC 240
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||
Sbjct 122 ATTATGGAATACTTGTCTTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGT 181
Query 241 TGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAAGGAA 299
||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 182 TGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGA 240
Query 300 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 300
Query 360 AAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAA 419
|||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||
Sbjct 301 AAACAGAATACTTGAAGAAGAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAA 360
Query 420 GTGCTTCAAATATGGAATGCTTTTACTAT 448
|||||| ||||||| | ||||| ||||||
Sbjct 361 GTGCTTGAAATATGTATTGCTTGTACTAT 389
> Ahg948923 jgi|Araly1|948923|scaffold_800810.1
Length=389
Score = 545 bits (295), Expect = 8e-155
Identities = 358/389 (92%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 61 ATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTGT 120
||||||| | |||||||||||||||||||||| | |||| |||||||| | ||||| ||
Sbjct 2 ATTTCAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGT 61
Query 121 TTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATT 180
| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 62 TGTAGCTTTGGTGTGTGTGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATC 121
Query 181 ATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGC 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 122 ATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGT 181
Query 241 TGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAAGGAA 299
||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 182 TGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGA 240
Query 300 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTGTGTCACGATACACTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 300
Query 360 AAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAA 419
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 301 AAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCGAAAA 360
Query 420 GTGCTTCAAATATGGAATGCTTTTACTAT 448
|||||| | ||||| | | ||| ||||||
Sbjct 361 GTGCTTGATATATGTATTTCTTGTACTAT 389
> Ahg948921 jgi|Araly1|948921|scaffold_800808.1
Length=389
Score = 545 bits (295), Expect = 8e-155
Identities = 358/389 (92%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 61 ATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTGT 120
||||||| | |||||||||||||||||||||| | |||| |||||||| | ||||| ||
Sbjct 2 ATTTCAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAAATTACTACGCTATTCATCGT 61
Query 121 TTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATT 180
| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 62 TGTAGCTTTGGTGTGTGTGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATC 121
Query 181 ATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGC 240
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||
Sbjct 122 ATTATGGAATACTTGTCTTGTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGT 181
Query 241 TGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAAGGAA 299
||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 182 TGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGA 240
Query 300 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 300
Query 360 AAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAA 419
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 301 AAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCGAAAA 360
Query 420 GTGCTTCAAATATGGAATGCTTTTACTAT 448
|||||| | ||||| | | ||| ||||||
Sbjct 361 GTGCTTGATATATGTATTTCTTGTACTAT 389
> Ahg949066 jgi|Araly1|949066|scaffold_800953.1
Length=390
Score = 544 bits (294), Expect = 3e-154
Identities = 360/392 (92%), Gaps = 4/392 (1%)
Strand=Plus/Plus
Query 60 TATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTG 119
|||||||| | ||||||||||||||||||||| | ||||||||||||| | ||||| |
Sbjct 1 TATTTCAAGCGTAAGTAGATATGTCTAAATTTTGCTCTCAGATTACTACGCTATTCATCG 60
Query 120 TTTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACAT 179
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 61 TTGTAGCTTTGGTGTGTGCGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAAT 120
Query 180 TATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTG 239
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 121 CATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTG 180
Query 240 CTGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAAGGA 298
||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 181 TTGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGG 239
Query 299 AAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCAC 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAGTTTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCAC 299
Query 359 GAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCT-CAATTTCCAA 417
|||||||||||||||||||||||| ||||||| ||||| |||||||| | |||| |||||
Sbjct 300 GAAACAGAATACTTGAAGAAGAGTAATGACTTATGGAATCATTGTGT-TACAATCTCCAA 358
Query 418 AAGTGCTTCAAATATGGAATGCTTTTACTATT 449
|||||| | ||||||| | ||||| |||||||
Sbjct 359 AAGTGCATGAAATATGTATTGCTTGTACTATT 390
> Ahg948919 jgi|Araly1|948919|scaffold_800806.1
Length=390
Score = 538 bits (291), Expect = 1e-152
Identities = 360/393 (92%), Gaps = 6/393 (2%)
Strand=Plus/Plus
Query 59 ATATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATT 118
|||||| || | |||||||||||||||||||||| | ||||||||||||| | |||||
Sbjct 1 ATATTTTAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATC 60
Query 119 GTTTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACA 178
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 GTTGTAGCTTTGGTGTGTGCGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAA 120
Query 179 TTATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCT 238
| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 121 TCATTATGGAATACTTGTGTTGTTAAAATCACTCCTAAGTGTGCGTTGGATATAATTGCT 180
Query 239 GCTGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAA-G 296
| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
Sbjct 181 GTTGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGG 239
Query 297 GAAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 356
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAAA-TGTGTCACGATACACTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 298
Query 357 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCA 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 299 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCA 358
Query 417 AAAGTGCTTCAAATATGGAATGCTTT-TACTAT 448
||||| ||| || | || | || ||| ||||||
Sbjct 359 AAAGTACTTGAACTTTGTATTG-TTTGTACTAT 390
> Ahg948916 jgi|Araly1|948916|scaffold_800803.1
Length=390
Score = 538 bits (291), Expect = 1e-152
Identities = 360/393 (92%), Gaps = 6/393 (2%)
Strand=Plus/Plus
Query 59 ATATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATT 118
|||||| || | |||||||||||||||||||||| | ||||||||||||| | |||||
Sbjct 1 ATATTTTAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATC 60
Query 119 GTTTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACA 178
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 GTTGTAGCTTTGGTGTGTGCGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAA 120
Query 179 TTATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCT 238
| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 121 TCATTATGGAATACTTGTCTTGTTAAACTCACTCCTAAGTGTGCGTTGGATATAATCGCT 180
Query 239 GCTGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAA-G 296
| ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |
Sbjct 181 GTTGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGG 239
Query 297 GAAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 356
||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAAA-TGTGTCACGAAACACTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 298
Query 357 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCA 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 299 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCA 358
Query 417 AAAGTGCTTCAAATATGGAATGCTTT-TACTAT 448
||||| ||| || | || | || ||| ||||||
Sbjct 359 AAAGTACTTGAACTTTGTATTG-TTTGTACTAT 390
> Ahg948918 jgi|Araly1|948918|scaffold_800805.1
Length=390
Score = 532 bits (288), Expect = 6e-151
Identities = 359/393 (91%), Gaps = 6/393 (2%)
Strand=Plus/Plus
Query 59 ATATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATT 118
|||||| || | |||||||||||||||||||||| | ||||||||||||| | |||||
Sbjct 1 ATATTTTAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATC 60
Query 119 GTTTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACA 178
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 GTTGTAGCTTTGGTGTGTGCGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAA 120
Query 179 TTATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCT 238
| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 121 TCATTATGGAATACTTGTGTTGTTAAAATCACTCCTAAGTGTGCGTTGGATATAATTGCT 180
Query 239 GCTGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAA-G 296
| ||||||||||||||||||||| | |||||||||||||||| |||||||| |||||| |
Sbjct 181 GTTGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTTAAAGAAGG 239
Query 297 GAAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 356
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAAA-TGTGTCACGATACACTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 298
Query 357 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCA 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 299 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCA 358
Query 417 AAAGTGCTTCAAATATGGAATGCTTT-TACTAT 448
||||| ||| || | || | || ||| ||||||
Sbjct 359 AAAGTACTTGAACTTTGTATTG-TTTGTACTAT 390
> Ahg952224 jgi|Araly1|952224|scaffold_47400001.1
Length=390
Score = 531 bits (287), Expect = 2e-150
Identities = 356/390 (91%), Gaps = 2/390 (1%)
Strand=Plus/Plus
Query 61 ATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTGT 120
|||| || | |||||||||||||||||||||| | |||| ||||||| | ||||| ||
Sbjct 2 ATTTGAAGCGTAAGTAGATATGTCTAAATTTAGCTCTCAAATTACTATGCTATTCATCGT 61
Query 121 TTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATT 180
| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 62 TGTAGCTTTGGTGTGTGTGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATC 121
Query 181 ATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGC 240
||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||
Sbjct 122 ATTATGGAATACTTGTCTTGTAAAAATCAATCCTAAGTGTGCGTTGGATATAATCGGTGT 181
Query 241 TGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAAGGAA 299
||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 182 TGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGA 240
Query 300 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACG 300
Query 360 AAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAA 419
||||| |||||||||||||||||| |||||||||||| |||||||||||||| || ||||
Sbjct 301 AAACACAATACTTGAAGAAGAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAA 360
Query 420 GTGCTTCAAATATGGAATGCTTTTACTATT 449
|||||| ||||||| | ||||| |||||||
Sbjct 361 GTGCTTGAAATATGTATTGCTTGTACTATT 390
> Ahg948917 jgi|Araly1|948917|scaffold_800804.1
Length=390
Score = 527 bits (285), Expect = 3e-149
Identities = 358/393 (91%), Gaps = 6/393 (2%)
Strand=Plus/Plus
Query 59 ATATTTCAACCATAAGTAGATATGTCTAAATTTAACACTCAGATTACTACATTGTTCATT 118
|||||| || | ||||||||||||||||||||| | ||||||||||||| | |||||
Sbjct 1 ATATTTTAAGCGGAAGTAGATATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATC 60
Query 119 GTTTTAGCTTTGGTGTGTGCGTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACA 178
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 GTTGTAGCTTTGGTGTGTGCGTTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAA 120
Query 179 TTATTATGGAATACTTGTCTTGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCT 238
| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 121 TCATTATGGAATACTTGTCTTGTTAAAATCACACCTAAGTGTGCGTTGGATATAATTGCT 180
Query 239 GCTGTCTTTGAAAATGGAACCATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAA-G 296
| ||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||| |
Sbjct 181 GTTGTCTTTGAAAATGGAACCAT-CTCTGATCCTTGCTGCAACGATCTCGTCAAAGAAGG 239
Query 297 GAAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 356
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAAA-TGTGTCACGATACACTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCC 298
Query 357 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCA 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 299 ACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCA 358
Query 417 AAAGTGCTTCAAATATGGAATGCTTT-TACTAT 448
||||| ||| || | || | || ||| ||||||
Sbjct 359 AAAGTACTTGAACTTTGTATTG-TTTGTACTAT 390
> Ahg497471 jgi|Araly1|497471|fgenesh2_kg.585__1__AT5G42955.1
Length=348
Score = 501 bits (271), Expect = 2e-141
Identities = 322/347 (93%), Gaps = 2/347 (1%)
Strand=Plus/Plus
Query 80 ATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTGTTTTAGCTTTGGTGTGTGCG 139
||||||||||||| | |||| ||||||| | ||||| ||| ||||||||||||||| |
Sbjct 1 ATGTCTAAATTTAGCTCTCAAATTACTATGCTATTCATCGTTGTAGCTTTGGTGTGTGTG 60
Query 140 TTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATTATTATGGAATACTTGTCTT 199
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 120
Query 200 GTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGCTGTCTTTGAAAATGGAACC 259
|| |||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 121 GTAAAAATCACTCCTAAGTGTGCGTTGGATATAATCGGTGTTGTCTTTGAAAATGGAACC 180
Query 260 ATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAAGGAAAAGTGTGTCACGATACGCT 318
|| | |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 181 AT-CTCTGATCCTTGTTGCAACGATCTCGTCAAAGAAGGGAAAGTGTGTCACGATACGCT 239
Query 319 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGAA 299
Query 379 GAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAAGTGCTT 425
||||| |||||||||||| |||||||||||||| || ||||||||||
Sbjct 300 GAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTGCTT 346
> Ahg494746 jgi|Araly1|494746|fgenesh2_kg.8__562__AT5G42955.1
Length=348
Score = 496 bits (268), Expect = 8e-140
Identities = 323/349 (93%), Gaps = 6/349 (2%)
Strand=Plus/Plus
Query 80 ATGTCTAAATTTAACACTCAGATTACTACAT-TGTTCATTGTTTTAGCTTTGGTGTGTGC 138
||||||||||||| | |||| ||||| || | | || |||||| || |||||||||||||
Sbjct 1 ATGTCTAAATTTAGCTCTCAAATTACCAC-TCTATTTATTGTTGTAACTTTGGTGTGTGC 59
Query 139 GTTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATTATTATGGAATACTTGTCT 198
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 GTTTGTTCTGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATTATTATGGAATACTTGTCT 119
Query 199 TGTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGCTGTCTTTGAAAATGGAAC 258
| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 120 TCTTAAAATCACTCCTAACTGTGCGTTGGATATAATCGCTGTTGTCTTTGAAAATGGAAC 179
Query 259 CATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAA-GGAAAAGTGTGTCACGATACG 316
||| | |||||||||||||||| |||||| |||||||| |||||| |||||||||||| |
Sbjct 180 CAT-CTCTGATCCTTGTTGCAACGATCTCATCAAAGAAGGGAAAA-TGTGTCACGATAAG 237
Query 317 CTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAG 297
Query 377 AAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAAGTGCTT 425
|||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 298 AAGAGTGATGACTTGTGGAATCATTGTGTCTCAATCTCCAAAAGTGCTT 346
> Ahg333428 jgi|Araly1|333428|fgenesh1_pm.C_scaffold_1006000001
Length=390
Score = 466 bits (252), Expect = 7e-131
Identities = 302/326 (93%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 80 ATGTCTAAATTTAACACTCAGATTACTACATTGTTCATTGTTTTAGCTTTGGTGTGTGCG 139
||||||||||||| | ||||||||||||| | ||||| ||| |||||||||||||||||
Sbjct 1 ATGTCTAAATTTAGCTCTCAGATTACTACGCTATTCATCGTTGTAGCTTTGGTGTGTGCG 60
Query 140 TTTGTTCCGGCTTTCTCAGTCGAAGAAGCTGAAGCAACATTATTATGGAATACTTGTCTT 199
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 61 TTTGTTCCGGTTTTCTCAGTCGAAGAAGCTGAAGCAAAATCATTATGGAATACTTGTCTT 120
Query 200 GTTAAAATCACTCCTAAGTGTGCTTTGGATATAATCGCTGCTGTCTTTGAAAATGGAACC 259
|||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||| |||
Sbjct 121 ATTAAAATCACTCCTAAGTGTGCGTTGGATATAATTGCTGTTGTCTTTGAAATTGGTACC 180
Query 260 ATGC-CTGATCCTTGTTGCAAGGATCTCGTCAAAGAA-GGAAAAGTGTGTCACGATACGC 317
|| | |||||||||| ||||| ||||||||||||||| |||||| ||||||||||||| |
Sbjct 181 AT-CTCTGATCCTTGCTGCAACGATCTCGTCAAAGAAGGGAAAA-TGTGTCACGATACAC 238
Query 318 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAACAGAATACTTGAAGA 298
Query 378 AGAGTGATGACTTGTGGAAACATTGT 403
||||||||||||||||||| ||||||
Sbjct 299 AGAGTGATGACTTGTGGAATCATTGT 324
> Ahg497449 jgi|Araly1|497449|fgenesh2_kg.474__9__AT5G42955.1
Length=384
Score = 220 bits (119), Expect = 6e-57
Identities = 139/149 (93%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 303 TGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATTGCCCACGAAA 362
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 236 TGTGTCACGATATGCTTATTAAATATATTGCAGATAAACCCATGTTCATTGCCCACGAAA 295
Query 363 CAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATTTCCAAAAGTG 422
||||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||
Sbjct 296 CAGAATACTTGAAGAAGAGTGCTGACTTGTGGAATCATTGTGTCTCAATCTCGAAAAGTG 355
Query 423 CTTCAAATATGGAATGCTTTTACTATTTT 451
||| ||||||| | ||||| |||||||||
Sbjct 356 CTTGAAATATGTATTGCTTGTACTATTTT 384
> Ahg497454 jgi|Araly1|497454|fgenesh2_kg.474__14__AT5G42957.1
Length=291
Score = 207 bits (112), Expect = 4e-53
Identities = 126/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 293 GAAGGAAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATT 352
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GAAGGGAAAGTGTGTCACGATACGCTTATTAAATATATTGCAGATAAACCCATGTTAATT 216
Query 353 GCCCACGAAACAGAATACTTGAAGAAGAGTGATGACTTGTGGAAACATTGTGTCTCAATT 412
||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 217 GCCCACGAAACTGAATACTTGAAGAAGAGTGCTGACTTGTGGAATCATTGTGTCTCAATC 276
Query 413 TCCAAAAGTGCTT 425
|| |||| |||||
Sbjct 277 TCGAAAATTGCTT 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17513415351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5