BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42960.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494707 jgi|Araly1|494707|fgenesh2_kg.8__523__AT5G42960.1 1254 0.0
> Ahg494707 jgi|Araly1|494707|fgenesh2_kg.8__523__AT5G42960.1
Length=825
Score = 1254 bits (679), Expect = 0.0
Identities = 768/811 (95%), Gaps = 5/811 (1%)
Strand=Plus/Plus
Query 56 ctct-ctctctctctctctctatctctACTGTGCGAAAATGGCGATGAAGGCTTCTATCA 114
|||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 17 CTCTGCTCTCTCTCTCTCTCTCTCTCTACTCTGCGAAAATGGCGATGAAGGCTTCTCTCA 76
Query 115 AAGGCAAGTACGATACTGACAAAACCAGTGGAATCGGTTCACTTGCTTTCAACGCCGGCG 174
|||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 77 AAGGCAAGTACGATGCTGACAAAACCAGCGGAATCGGTTCACTAGCTTTCAACGCCGGCG 136
Query 175 ATATTAAGCTACGCGCCACCATGACCGATGCTACTCTCGTCGCCGGTCCTACTTTGACCG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 ATATTAAGCTACGCGCCACCATGACCGATGCTACTCTCGTCGCCGGTCCTACTTTGACCG 196
Query 235 GTCTCGCTCTCGCTGTAGAGAAGCCTGGTTCCTTCATCG-TCGAGTACAACGTCCCTAAA 293
||||| ||||||| || || ||||||||||||||||| | |||||||||||||||||||
Sbjct 197 GTCTCTCTCTCGCCGTCGAAAAGCCTGGTTCCTTCAT-GATCGAGTACAACGTCCCTAAG 255
Query 294 AAGGATGTTAGGTTTCAGTTCATGAACACAGTAAGAATTGCAGAGAAGCCTTTGAATTTG 353
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 256 AAGGATGTTAGGTTTCAGTTCATGAACACGGTAAGAATTGCGGAGAAGCCTTTGAATTTG 315
Query 354 ACTTACATTCATAGCAGAGCTGATAACAGAACAATTGTCGATGGGAGCCTTGTGATTGAT 413
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 316 ACTTACATTCATAGCAGAGCTGATAACCGAACAATTGTCGATGGGAGCCTTGTGATTGAT 375
Query 414 TCTGCAAACAAACTCTCTGCTAACCACATGGTTGGGACAAACAACTGTAAGATTAAGTAT 473
|||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 376 TCTGCAAACAAACTCTCTGCTAACCACATGGTGGGGACGAACAACTGTAAGCTTAAGTAT 435
Query 474 ACCTATGCTCATGGAGGGTTAGCTACGTTCGAGCCGTGTTATGACTTGGCGAAAAATACA 533
|||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 436 ACCTATGCACATGGAGGGTTAGCTACGTTTGAGCCGTGCTATGACTTGGCGAAGAATACA 495
Query 534 TGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGATAATGTGAGGGCAACTTATCAG 593
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 496 TGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGACACTGTCAGGGCAACTTATCAG 555
Query 594 ACGTCTAGTAAGTTGTTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGATTCAAG 653
|| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 556 ACATCTAGTAAGTTGCTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGAATCAAG 615
Query 654 GTATGTGCGTCTGTGAATCTTGCGGATGAACTGAAAACGCCGAAATTGACCGCAGAAACT 713
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 616 GTATGTGCGTCTGTGAATCTTGCGGATGAAGTGAAAACGCCGAAATTGACTGCAGAAACT 675
Query 714 ACATGGAACCTTGAAATGTAGTCTCTTCTTTACACTACTTAGCTAAGTTTCACTTCAATT 773
||||||||||||||||||||||| | || |||||||||||||||||| |||||||||||
Sbjct 676 ACATGGAACCTTGAAATGTAGTCCCCACTATACACTACTTAGCTAAGTGTCACTTCAATT 735
Query 774 GTTTGGTGTTGCAACACATTTTACTAGTCGGTTCTTGCGAATCTTCCGAAATTTTGTTGC 833
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 736 GTTTGGTGTTGCAACACATTTAACTAGTCGGTTCTTCCAAATCTTCCGAAATTTTGTTGC 795
Query 834 AACAGTTTCTCATTATTATTAC-TAGCAGTT 863
|||||||||||||||| || || ||||||||
Sbjct 796 AACAGTTTCTCATTATAAT-ACCTAGCAGTT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5