BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G42970.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948914 jgi|Araly1|948914|scaffold_800801.1 1984 0.0
> Ahg948914 jgi|Araly1|948914|scaffold_800801.1
Length=1235
Score = 1984 bits (1074), Expect = 0.0
Identities = 1182/1235 (96%), Gaps = 4/1235 (0%)
Strand=Plus/Plus
Query 66 AAATCTCAG-AAGAGAAGCCATGGATGAAGCTTTGACGAACGCTTCTGCAATCGGTGACC 124
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAATCTCCGAAAGAGAAGCCATGGATGAAGCTTTGACGAACGCTTCTGCAATCGGTGACC 61
Query 125 AACGCCAGAAAATCGAACAGTACAAACTCATCCTCTCCTCTGTTCTCTCTTCCAACGATC 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 AACGCCAGAAAATCGAACAGTACAAACTCATCCTCTCCTCTGTTCTTTCTTCCAACGATC 121
Query 185 TTCTCCAAGCTCAGAGATTCATCGATCACATTCTTTCCGATGATGTCCCGTTGGTGGTTT 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TTCTCCAAGCGCAGAGATTCATCGATCACATTCTTTCCGATGATGTCCCGTTGGTGGTTT 181
Query 245 CGAGGCAGCTTTTGCAGTCTTTCGCACAAGAGCTTGGGAGATTAGAACCGGAGACGCAGA 304
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CGAGGCAGCTTTTGCAATCGTTCGCACAAGAGCTTGGGAGATTAGAACCGGAGACGCAGA 241
Query 305 AGGAGATTGCTCAATTTACTCTTA-CCCAGATTCAGCCTAGAGTTGTTTCCTTTGAGGAA 363
||||| ||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct 242 AGGAGGTTGCTCAGTTTACT-TTAACCCAGATTCAGCCTAGAGGTGTTTCCTTTGAGGAA 300
Query 364 CAGGCACTTGTTATCAGAGAAAAACTTGCGGGTTTGTATGAATCAGAGCAGGAATGGTCA 423
||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 301 CAGGCACTTATTATCAGAGAAAAACTTGCCGGTTTGTATGAATCGGAGCAGGAATGGTCT 360
Query 424 AAAGCAGCACAGATGTTGAGTGGAATTGATCTGGATTCTGGAATGAGGGCCGTTGACGAC 483
||||| || ||||||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 361 AAAGCGGCGGAGATGTTGAGTGGCATTGATTTGGATTCTCCAATGAGGGCCGTTGACGAC 420
Query 484 AACTTCAAGCTTTCAAAGTGTATCCAAATTGCTCGTTTGTATCTCGAGGATGATGATGCT 543
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTTCAAGCTTTCAAAGTGTATTCAAATTGCTCGTTTGTATCTCGAGGATGATGATGCT 480
Query 544 GTAAATGCAGAGGCTTTTATAAATAAAGCTTCTTTCTTAGTGAGCAATAGTCAGAATGAA 603
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 GTAAAAGCAGAGGCTTTCATAAATAAAGCTTCTTTCTTAGTGAGCAGTAGTCAGAATGAA 540
Query 604 GTTTTGAATTTGCAGTACAAGGTCTGCTATGCTAGAATTTTGGACATGAAAAGAAAGTTT 663
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 541 GTTTTGAATTTGCAGTACAAGGTCTGCTATGCTAGAATTTTGGATATGAAACGAAAGTTT 600
Query 664 TTAGAGGCTGCACTTCGGTATTACGGCATATCTCAGATTGAGCAACGCCAAATAGGGGAT 723
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 TTAGAGGCTGCACTTCGGTATTACGGCATATCTCAGATTGAGAAACGCCAAATAGGGGAT 660
Query 724 GAAGAGATTGATGAGAATGCTTTAGAGCAGGCCCTATCAGCTGCTGTCACATGTACCATA 783
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 661 GAAGAGATTGATGAGAATGCTTTAGAGCAAGCCCTATCCGCTGCTGTCACATGTACCATA 720
Query 784 TTAGCTGGAGCTGGTCCTCAGCGTTCTCGTGTTCTTGCAACTTTATACAAAGATGAGCGT 843
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 721 TTAGCTGGAGCCGGTCCTCAGCGATCTCGTGTCCTTGCAACTTTATACAAAGATGAGCGT 780
Query 844 TGCTCCAAGCTGAAGATTTATCCTATCCTGCAGAAGGTGTATCTGGAAAGGATTTTAAGG 903
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TGCTCCAAGCTGAAGATTTATCCTATCCTGCAGAAGGTGTATCTGGAAAGAATTTTAAGG 840
Query 904 AGACCAGAGATTGATGCCTTTTCAGAAGAACTAAGGCCACATCAGAAAGCATCTTTGCCT 963
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGACCAGAGATTGATGCTTTTTCAGAAGAACTAAGGCCACATCAGAAAGCATCTTTGCCT 900
Query 964 GACAAATCCACTGTTCTTGACCGTGCTATGATTGAGCATAACCTTCTTAGTGCAAGCAAA 1023
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 GACAAATCCACTGTTCTAGACCGTGCTATGATTGAGCATAACCTTCTAAGTGCAAGCAAA 960
Query 1024 CTCTACACAAACATAAGGTTTGATGAATTGGGAACTCTGTTGGCGATTGATCCAAGAAAA 1083
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 961 CTCTACACAAACATAAGGTTTGATGAATTGGGAACTCTGCTGGGGATTGATCCAAGAAAG 1020
Query 1084 GCGGAGAAGATAGCAGCTAATATGATTGGGCAAGACCGAATGAGGGGTTCCATAGATCAG 1143
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1021 GCGGAGAAGATAGCAGCTAATATGATTGGGCAAGACAGAATGAGGGGTTCCATAGATCAG 1080
Query 1144 GAGGAGGCTGTGATTCATTTTGAGGATGACGTGGAGGAACTACAACAATGGGATCAACAG 1203
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1081 GAGGAGGCTGTGATACATTTTGAGGATGACATTGAGGAACTACAACAATGGGATCAACAG 1140
Query 1204 ATATCGGGATTATGCCAAGCTCTCAATGACATTCTGGATGGGATGGCCAAGAAAGGCATG 1263
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 ATATCTGGATTGTGCCAAGCTCTCAATGACATTCTGGATGGGATGGCCAAGAAAGGCTTG 1200
Query 1264 TCTGTTCCTGTCTGATTGACTCCCAAGCCGTGAGA 1298
|||||||||||||||||| ||| |||| ||||||
Sbjct 1201 CCTGTTCCTGTCTGATTGATTCC-AAGCTGTGAGA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5