BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43000.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494703 jgi|Araly1|494703|fgenesh2_kg.8__519__AT5G43000.1 634 0.0
> Ahg494703 jgi|Araly1|494703|fgenesh2_kg.8__519__AT5G43000.1
Length=665
Score = 634 bits (343), Expect = 0.0
Identities = 428/470 (91%), Gaps = 2/470 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATCCTAACTCCCGTCATTAAACTCGTTGTTTTTAGGCAAAGTCTACGACCACAT 60
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGCGATCCTAACTCCGGTCATAAAACTCGTGGTTTTTAGGCAAAGTCTTCGACCACAT 60
Query 61 TCTGCTATTGCATTCCTCGTTGAGTTTCTTTGCTTCGTCTTAGAATTACTCGACAAGGAG 120
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCAGCTATTGCATTCCTCGTTGAGTTCCTTTGCTTCGTCTTAGAATTACTCGACAAGGAG 120
Query 121 AAAGATCTAGCCAAAATATTCGGTATCGTATGTGCTTGCGACACATTAATCTTCACTTTG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AAAGATCTAGCCAAAATATTCGGTATTGTATGTGCTTGCGACACATTAATCTTCACTTTG 180
Query 181 CTCGATCTTATCCAAAGTTTGATCGAGGAAGAAGTGAAAATACAAAGATGCGGCCGAGTG 240
|| || || ||||||| | || ||||||||||||||||||||| ||||||| ||||||
Sbjct 181 CTTGACCTAATCCAAAATCTGCTCGAGGAAGAAGTGAAAATACGGCGATGCGGTCGAGTG 240
Query 241 TTTTGGCTTTACACAAACGATGGGAGCCTCTATTGGCACACATTAAACGCATATCTTTTG 300
|||||||| |||||||| || | || ||||||||||||||||||||||| ||||| |
Sbjct 241 TTTTGGCTCTACACAAAGGACGAAAGGCTCTATTGGCACACATTAAACGCGTATCTAGTC 300
Query 301 ATGTTATGCATTGTCCACGTCATCGGTTCCACGATCTCTTACGTTTCTCATAAACATTAT 360
||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 301 ATGTTATGCATCGTCCATGTCATCGGTTCTACGATCTCTTACGTTTCTCATAGACATTAT 360
Query 361 CTAGTCTTGCTCCCGCTTTTCGCAGCCGGACTCGAACTCGTCCCACAAGAAGCCTATCGA 420
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CTAGTCTTGCTCCCGCTTTTTGCAGCAGGACTCGAACTCGTCCCACAAGAAGCCTATCGG 420
Query 421 GTTCTTGGACCGGATCAAGAGTCTGGAA-ATTCTATTGAGCCTCTTAATG 469
||||||||||||||||||||||| || | | ||| | |||||||||||
Sbjct 421 GTTCTTGGACCGGATCAAGAGTCAC-AAGACTGTATCGGGCCTCTTAATG 469
Score = 350 bits (189), Expect = 1e-95
Identities = 249/277 (90%), Gaps = 7/277 (3%)
Strand=Plus/Plus
Query 559 GAACTCGTCCCACAAGAAACCAATCGGGTTCTTGGACCGGACCAAGAGTCACAAAACTGT 618
|||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||
Sbjct 394 GAACTCGTCCCACAAGAAGCCTATCGGGTTCTTGGACCGGATCAAGAGTCACAAGACTGT 453
Query 619 ATCGGGGCTCTTAATGACCCATCAG-ATGGAAAAGACCAAAACCTTCAAGATGATATTGT 677
|||||| |||||||||||||||| | |||||||||| |||| |||||||||||||||||
Sbjct 454 ATCGGGCCTCTTAATGACCCATC-GTATGGAAAAGATCAAACCCTTCAAGATGATATTG- 511
Query 678 G-CTAGATCAAGAGTCACAAGATTGTATTATTGCACCTCATCAATGTCCATTAGATGGTA 736
| ||| |||||||||||||||| || ||||||||||||||| ||||||||| || ||
Sbjct 512 GCCTAAATCAAGAGTCACAAGACTG---CATTGCACCTCATCAAGGTCCATTAGCTGATA 568
Query 737 TTGACCTACAACAAGAAACGGTAGTTCACGTTGAGCCTCTTCAAGACCCACTAGATGGTA 796
|||| ||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 569 TTGAGCTAGAACAAGAAATGGTTGTTCATGTTGAGCCTCTTCAAGATTCACTAGATGGTA 628
Query 797 TTGAGCTAGAGCAAGAAGTGGCTATTCATGTTGGGCC 833
||||||||||||||||||||||| |||||||||||||
Sbjct 629 TTGAGCTAGAGCAAGAAGTGGCTGTTCATGTTGGGCC 665
Score = 134 bits (72), Expect = 1e-30
Identities = 86/93 (92%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 469 GGTCCATTAAATGGTATTGAGCTTGAACAAGGAATGGTTGTTCATGTTGAGCCTCTTCAA 528
||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 553 GGTCCATTAGCTGATATTGAGCTAGAACAAGAAATGGTTGTTCATGTTGAGCCTCTTCAA 612
Query 529 GAGCCACTAGATGGTATTGAGCTAGAGCAAGAA 561
|| |||||||||||||||||||||||||||||
Sbjct 613 GATTCACTAGATGGTATTGAGCTAGAGCAAGAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5