BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G43010.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494702 jgi|Araly1|494702|fgenesh2_kg.8__518__AT5G43010.1 2322 0.0
Ahg922941 jgi|Araly1|922941|scaffold_104222.1 1432 0.0
> Ahg494702 jgi|Araly1|494702|fgenesh2_kg.8__518__AT5G43010.1
Length=1521
Score = 2322 bits (1257), Expect = 0.0
Identities = 1440/1528 (94%), Gaps = 14/1528 (1%)
Strand=Plus/Plus
Query 1 AAACCCATTGCTCAAGAAAACT-TTTCAGACAGATTTGTTTCGAGAAAAGATCGCTTGCT 59
|||||||||||||||||||||| ||| ||||| |||||||||||| |||||||| |||||
Sbjct 1 AAACCCATTGCTCAAGAAAACTCTTT-AGACAAATTTGTTTCGAG-AAAGATCGTTTGCT 58
Query 60 T-GGCTTTTCAGGATAATCTGAGATCTATCTGTAGAAGAAGCAG-ATACAGAATTCAGAA 117
| || |||| || | ||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 59 TCGG-TTTTAAGAAAAATCTGAGATCTATCTGTAGAAGAAGCAGCA-AAAGGATTCAGAA 116
Query 118 ACGATGACCGACGTCGATGAATCCGTTAGACGCCGTACAGCCGCCGTTTCCGAGTACCGG 177
|| ||||||||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 117 ACTATGACCGACGTCGATGAATCCGTTAGACGCCGTACCGCTGCGGTCTCCGAGTACCGG 176
Query 178 AAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGAGAACTTA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 AAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGACAACTTA 236
Query 238 AGAGGAGCTAAAAAGGAATTCAACAAAACCGAGGATGATCTCAAGTCTCTTCAAAGTGTT 297
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 237 AGAGGAGCTAAAAAGGAGTTCAACAAAACTGAGGATGATCTTAAGTCTCTTCAAAGTGTT 296
Query 298 GGGCAGATTATTGGAGAAGTGCTTCGACCCCTGGATAATGAAAGATTGATTGTGAAAGCG 357
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 297 GGGCAGATTATTGGAGAAGTTCTTCGACCTCTGGATAATGAAAGATTGATTGTCAAAGCG 356
Query 358 AGCAGTGGTCCACGTTATGTGGTGGGTTGCCGAAGCAAAGTGGATAAGGAAAAGCTAACC 417
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 AGCAGTGGTCCTCGTTATGTGGTGGGTTGCCGAAGCAAAGTCGATAAGGAAAAGCTAACC 416
Query 418 TCCGGAACTCGAGTTGTTCTCGATATGACAACACTAACAATTATGCGAGCCCTTCCCCGA 477
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 417 TCAGGAACTCGAGTTGTTCTGGATATGACAACACTAACAATAATGCGAGCCCTTCCCCGA 476
Query 478 GAAGTTGATCCTGTTGTTTATAACATGCTTCATGAAGACCCTGGCAACATTAGCTACTCC 537
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 477 GAAGTTGATCCTGTTGTTTATAACATGCTTCATGAAGACCCAGGCAACATTAGCTATTCC 536
Query 538 GCTGTCGGAGGGTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTCCCTCTC 597
|| || || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 GCGGTTGGTGGTTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTACCTCTC 596
Query 598 ATGAATCCTGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTCCTTCTGTAT 657
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 ATGAATCCCGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTTCTTCTGTAT 656
Query 658 GGACCTCCAGGTACTGGAAAAACTCTACTAGCCAGGGCTATTGCCAGCAACATCGATGCT 717
|||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 657 GGACCTCCGGGTACTGGAAAAACTCTACTAGCGAGGGCTATAGCCAGCAACATCGATGCC 716
Query 718 AACTTCTTGAAGGTTGTATCCAGTGCAATCATAGACAAGTACATTGGAGAAAGTGCTAGG 777
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 717 AACTTCTTGAAGGTTGTATCTAGTGCAATAATAGACAAATACATTGGAGAAAGTGCTAGG 776
Query 778 CTGATTCGGGAGATGTTTAACTATGCCCGTGAACATCAGCCTTGTATCATATTCATGGAT 837
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 777 CTGATCCGGGAGATGTTTAACTATGCCCGTGAACACCAGCCTTGTATCATTTTCATGGAT 836
Query 838 GAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAAATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAAATT 896
Query 898 CAAAGAACGCTTATGGAGTTACTCAACCAGCTTGATGGGTTTGACAACCTCGGAAAGGTG 957
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 CAAAGAACACTTATGGAGTTACTCAATCAGCTTGATGGGTTTGACAACCTCGGAAAGGTG 956
Query 958 AAAATGATAATGGCCACAAACAGGCCTGATGTGCTTGATCCTGCGCTTCTCCGTCCGGGA 1017
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 AAAATGATAATGGCCACAAACAGGCCAGATGTGCTTGATCCTGCGCTTCTCCGTCCGGGA 1016
Query 1018 AGGTTAGATAGAAAGATTGAGATCCCTTTGCCAAACGAGCAGTCAAGAATGGATATTCTT 1077
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1017 AGGTTAGATAGGAAGATTGAGATCCCTTTGCCAAATGAGCAATCAAGAATGGATATTCTC 1076
Query 1078 AAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATCGATTACGAGGCTATTGTCAAA 1137
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1077 AAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATTGACTACGAGGCTATTGTCAAA 1136
Query 1138 CTTGCAGAGG---GATTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAATG 1194
||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTTGCTGAGGTTTGTTTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAATG 1196
Query 1195 TTTGCAATCCGAGCAGAGCGGGATTATGTGATCCATGAAGATTTCATGAAGGCGGTGAGA 1254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTTGCAATCCGAGCAGAGCGGGACTATGTGATCCATGAAGATTTCATGAAGGCGGTGAGA 1256
Query 1255 AAGCTGAGTGAGGCCAAGAAACTGGAGTCCAGTTCGCACTATAACGCTGATTTTGGAAAA 1314
||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1257 AAGCTCAGTGAGGCAAAGAAACTCGAGTCGAGTTCGCACTATAACGCTGATTTTGGAAAA 1316
Query 1315 GAGTGAGAGAGTACACACTCTTTCTTGTGCTTTAGGGATGAAGAAAGGACATTGCAATGA 1374
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAGTGAGAGGGTACAC--TCTTTCTTGTGCTTTAGGGATGAAGAAAGGACATTGCAATGG 1374
Query 1375 CTGTCTCGTATTCTTTATTAGCAATGTGAAACTTGttt-ttttAACTCTTTCAAAAGCAA 1433
| || ||||||| |||||| |||||||||||||||||| ||||| || ||| | |||||
Sbjct 1375 CAGTTTCGTATTATTTATTGGCAATGTGAAACTTGTTTGTTTTA-CTTTTTGAGGAGCAA 1433
Query 1434 AGCTTGTTGTGAAGTGTGTGCTTAGTTACTACGTTTCAGTAATTTAGTGCTTCAAACAAG 1493
||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1434 AGCTTGTTGTGGACTGTGTGCTTAGTTACTACGTTTTAGTAATTTAGTGCGTCAAACAAG 1493
Query 1494 CATTTACCTCTTTTCTCGTTGGTACTGT 1521
|||||||||||||||||||||||| |||
Sbjct 1494 CATTTACCTCTTTTCTCGTTGGTATTGT 1521
> Ahg922941 jgi|Araly1|922941|scaffold_104222.1
Length=1240
Score = 1432 bits (775), Expect = 0.0
Identities = 1065/1209 (88%), Gaps = 4/1209 (0%)
Strand=Plus/Plus
Query 116 AAACGATGACCGACGTCGATGAATCCGTTAGACGCCGTACAGCCGCCGTTTCCGAGTACC 175
||| ||||| ||||| || || ||| |||||||||||| || || || | || ||||
Sbjct 16 AAAAGATGAGCGACGGAGACGACGCCGCTAGACGCCGTACCGCGGCGGTGACTGATTACC 75
Query 176 GGAAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGAGAACT 235
|||| |||||||| || || ||||| |||||||||||||| || |||||||||||||| |
Sbjct 76 GGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGCACAGCTAGGGAGAATT 135
Query 236 TAAGAGGAGCTAAAAAGGAATTCAACAAAACCGAGGATGATCTCAAGTCTCTTCAAAGTG 295
|||||| |||||| ||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 136 TAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGAAGTCTCTTCAAAGTG 195
Query 296 TTGGGCAGATTATTGGAGAAGTGCTTCGACCCCTGGATAATGAAAGATTGATTGTGAAAG 355
|||| ||||||||||||||||| || || || || |||||||| |||||||||| || |
Sbjct 196 TTGGTCAGATTATTGGAGAAGTACTACGTCCTCTTGATAATGAGCGATTGATTGTTAAGG 255
Query 356 CGAGCAGTGGTCCACGTTATGTGGTGGGTTGCCGAAGCAAAGTGGATAAGGAAAAGCTAA 415
|||| |||||||| ||||||||||||||||| || ||||| || || ||||||||||| |
Sbjct 256 CGAGTAGTGGTCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTTGACAAGGAAAAGCTGA 315
Query 416 CCTCCGGAACTCGAGTTGTTCTCGATATGACAACACTAACAATTATGCGAGCCCTTCCCC 475
| || |||||||||||||| || |||||||| || || ||||| |||||||||||||| |
Sbjct 316 CTTCGGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATAATGCGAGCCCTTCCTC 375
Query 476 GAGAAGTTGATCCTGTTGTTTATAACATGCTT-CATGAAGACCCTGGCAACATTAGCTAC 534
| ||||| ||||||||||||||||||||| || |||||||| || || |||||||| |||
Sbjct 376 GTGAAGTCGATCCTGTTGTTTATAACATG-TTGCATGAAGATCCAGGTAACATTAGTTAC 434
Query 535 TCCGCTGTCGGAGGGTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTCCCT 594
|| ||||| || || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 435 TCGGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTCAGAGAATCTATTGAGCTGCCT 494
Query 595 CTCATGAATCCTGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTCCTTCTG 654
|||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 495 CTCATGAATCCTGAACTTTTCCTTAGAGTAGGGATTAAACCTCCTAAGGGTGTCCTTCTG 554
Query 655 TATGGACCTCCAGGTACTGGAAAAACTCTACTAGCCAGGGCTATTGCCAGCAACATCGAT 714
||||||||||| ||||||||||||||| || |||| ||||| ||||||||||| |||||
Sbjct 555 TATGGACCTCCGGGTACTGGAAAAACTTTATTAGCTAGGGCCATTGCCAGCAATATCGAC 614
Query 715 GCTAACTTCTTGAAGGTTGTATCCAGTGCAATCATAGACAAGTACATTGGAGAAAGTGCT 774
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 615 GCCAACTTCTTGAAGGTTGTATCAAGTGCAATCATAGACAAATACATTGGAGAAAGTGCT 674
Query 775 AGGCTGATTCGGGAGATGTTTAACTATGCCCGTGAACATCAGCCTTGTATCATATTCATG 834
||| |||| || || ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct 675 AGGTTGATCCGAGAAATGTTTAACTACGCTCGTGAACACCAGCCTTGTATCATTTTCATG 734
Query 835 GATGAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAA 894
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 735 GATGAAATCGATGCTATTGGTGGGCGCCGTTTTAGTGAAGGAACTAGTGCTGATCGTGAA 794
Query 895 ATTCAAAGAACGCTTATGGAGTTACTCAACCAGCTTGATGGGTTTGAC-AACCTCGGAAA 953
|| |||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 795 ATCCAAAGAACACTTATGGAGTTACTCAACCAGCTTGATGGGTTTGACCAACTT-GGAAA 853
Query 954 GGTGAAAATGATAATGGCCACAAACAGGCCTGATGTGCTTGATCCTGCGCTTCTCCGTCC 1013
||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||
Sbjct 854 GGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAGCACTTCTCCGTCC 913
Query 1014 GGGAAGGTTAGATAGAAAGATTGAGATCCCTTTGCCAAACGAGCAGTCAAGAATGGATAT 1073
|| |||||||||||||||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 914 TGGTAGGTTAGATAGAAAGATTGAGATCCCGTTGCCAAATGAACAATCAAGAATGGAAAT 973
Query 1074 TCTTAAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATCGATTACGAGGCTATTGT 1133
|| |||||||| || ||||||| ||||| ||||| ||||| || || |||||||| ||
Sbjct 974 CCTCAAGATCCACGCCTCTGGTATTGCCAAGCATGGAGAAATAGACTATGAGGCTATCGT 1033
Query 1134 CAAACTTGCAGAGGGATTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAAT 1193
||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1034 GAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCACTGAAGCTGGAAT 1093
Query 1194 GTTTGCAATCCGAGCAGAGCGGGATTATGTGATCCATGAAGATTTCATGAAGGCGGTGAG 1253
|||||| || |||| ||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 1094 GTTTGCGATAAGAGCGGAGCGTGACTATGTAATCCATGAAGACTTCATGAAGGCGGTGAG 1153
Query 1254 AAAGCTGAGTGAGGCCAAGAAACTGGAGTCCAGTTCGCACTATAACGCTGATTTTGGAAA 1313
||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || ||
Sbjct 1154 AAAGCTGAGCGAGGCCAAGAAACTTGAGTCGAGCTCTCACTATAACGCGGATTTCGGGAA 1213
Query 1314 AGAGTGAGA 1322
||||| |||
Sbjct 1214 AGAGTAAGA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5